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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                 ------------------------>ANAC81
                xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
          --------->At5g28300       ----------->GT1
         ----------->GT1          ------------------------>ANAC81    ----------->GT1
        ------------------------>ANAC81  ---------->DOF2             <------MYB46(1)
  <---------TOE2(3)               ----------->GT1        ----------->GT1
------>DAG2    xxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <------ZmHOX2a(1)<------MYB83
-ID1<------ZmHOX2a(1)         ---------->DOF2 ---------->DOF2  <---------AHL20(2)   <----------DOF2
 
aaattgaggagatggtaaaaaaaaaaaaaaaaaaaaagagagaaaaaagaaaagaggagattgtaagtaatttggtttattaggcttcttttggtagaga  15737600
                       <---------YAB1
                      --------->KAN4(2)
                     <---------KAN4(1)                                                            --
                     --------->KAN4(1)        --------->ABI4(2)                                  <--
                    <---------YAB1            <---------ZAT18                                   ----
                   <---------GLK1(2)      <---------DEAR3(1)                  <----------DOF2   <---
               ---------->DOF2           <---------LBD16                ------>NtERF2         ------
 
gatttagtttgagcaaaaaaaagattattctactgcaagtattttgcggtgctcttcttctccatatttcttctctgccttcttttcaattttagtcaag  15737700
             --------->ARR11(3)
       ----------->GT1
  --------->DAG2
 ---------->DOF2                                                 <---------------AGL15
------->YAB1 --------->AHL20(1)                                  --------------->AGL15
----ZmHOX2a(2)                                             <---------ICU4  <-----------GT1
----->ARR11(3)                                            --------->AHL20(2)
------ARR11(3)                         <---------ALFIN1   <---------AHL20(2)   --------->ANAC46
--->ICU4     <---------AHL20(1)      ----------->RAV1(1)  <---------YAB1----------->GT1
 
atcataaagtttgaaaaatattgaaacgaagtcaaacttgcaacacttgccatgtagtcatataattacaaaaattagttacaaatcacatttgtcaata  15737800
                                                                                           <--------
                                                                                           ---------
                                                                                          --------->GLK1(1)
                                                                                          <---------GLK1(1)
                                                                                       <<<<<<<<<<E2Fb
                                                                                       <------NtERF2
                                                                                      --------->LBD16
                                                                                      ------>NtERF2
                                                                                     <---------ANAC46
                            ----------->GT1                      <---------MYB46(3) <---------LBD16
              --------->ARR14(2)        <----------ID1          --------->ALFIN1   ------->GAMYB
  --------->HSFB2a(2)  <---------YAB1   ----------->GT1      --------->DAG2       --------->MYB46(3)
  <---------HSFB2a(2)--------->YAB1--------->ATHB12        ---------->DOF2      --------->MYB52(1)
 
ctcttccaaaaatttagtattctcttataatttgtaaaacattgggaaaaatgagagagaagaaaaggtggtgagagaaattccaacggcgggaaatctt  15737900
                                                 ------>ZmHOX2a(2)
                                                 ==========================HOX2a_HOX2a
                                               <---------ARR11(3)               <---------ARR11(3)
                                    <---------ANAC58                            <---------ARR14(2)
                                    <---------ANAC58                     *TSS   --------->ARR11(3)
                                   --------->At4g35610              ------>ZmHOX2a(1)
                                   <---------At4g35610             --------->TOE2(3)
                                  <---------MYB46(3)         <---------ICU4     --------->ARR14(2)
                    <---------ARR11(3)         --------->ARR11(3) ----------------->AGL1      ------
    <---------At4g35610           --------->MYB52(2)       <---------ANAC55(2)  <---------ARR11(1)
-ARR11(3)           --------->ARR11(3)------>NtERF2        --------->ANAC55(2) <---------CCA1(2)----
>ARR11(3)     --------->ETT(1)  <---------MYB52(1)      <---------MYB52(1) <-----------HVH21------->GAMYB
 
tgaagttagcagttttgtcggaagatgtctcattcgtttgctggcttcatgatctctctgttacttatttcctaaatttgtcatatcttggacaacctcc  15738000
                XXXXXXXXXXXXXXXXXXX>MIR394A/B
                <---------ICU4   <---------GLK1(2)
               <---------YAB1    --------->ARR14(2)                 <---------TOE1(3)
        <----------DOF2    --------->ANAC46                         <---------TOE2(3)
     --------->ARR11(3)    --------->ANAC58                 <----------DOF2
     <---------ARR11(3)  <---------ALFIN1              ------>ZmHOX2a(1)
----->RAV1(2)  <---------ATHB12  <---------ARR14(2)--------->ARR14(2)               <----------DOF2
-->ZmHOX2a(1)--------->YAB1--------->ANAC58        <---------ARR14(2)     <-----------GT1<----------
 
tgagagaagttctttctcatcattctttccaccccaaattctcttcttcgactggttcctcttctttttgtaaggtttttctcttctctttttttttttg  15738100
                                                                        <---------TOE1(3)
                                                                        <---------TOE2(3)
                                                               --------->TOE1(2)
                                                               --------->TOE2(2)
                                                              --------->ANAC58
                                                              --------->ANAC55(2)            <------
                                                              --------->ANAC58          --------->ANAC46
                                                              ----------->GT1           --------->ANAC58
                                --------->TOE1(3)        --------->ANAC58               --------->ANAC58
                         <---------ANAC46                --------->ANAC58       <---------TOE2(3)
                         <---------ANAC58               <---------TOE2(2)      ---------->DOF2
                   <-----------RAV1(2)                  <---------TOE1(2) <------ZmHOX2a(1) --------
                 <-----------HVH21           <---------TOE2(2)<---------ANAC55(2)    <-------TEIL --
--------------ANAC81     <---------ANAC58    <---------TOE1(2)<---------ANAC46<---------AHL20(2)  --
 
tttgtttgaacattttagagcatcaggggcttgaagcttaaaatttcccatgtttctcgcatgtaacgtaagattaaggatttaaagatgcacgagaata  15738200
                                                                              <---------ARR11(3)
                                          --------->YAB1             <---------------AGL15
                    ----------->GT1       <---------ICU4             --------------->AGL15
---KAN4(2)  <---------ANAC58             --------->ICU4          <---------GLK1(1)
->YAB1      <---------ANAC58      <---------TOE2(2)              --------->GLK1(1)            <-----
------->TOE2(3) <---------TOE2(3) <---------TOE1(2)            <------ZmHOX2a(1)       <-----------GT1
------->TOE1(3) <---------YAB1   <-----------RAV1(2)   <----------DOF2        --------->ARR11(3)
 
acctcaatgtttttggcttaagatagtaatttcttctcaggtaaatgatgacattgctctttgataggatttctcatttgagatattgtttttcttcatg  15738300
                                                                                --------->At4g35610
                                                                                --------->GLK1(1)
                                                  --------->LBD16              --------->ARR14(2)
                                              <---------ARR14(2)             --------->LBD16
                                              --------->ARR14(2)           <---------LBD16
                                             <---------GLK1(1)            --------->MYB52(1)
                                             --------->GLK1(1)       --------->LBD16
                                         --------->DAG2              ------>ZmHOX2a(1)
                                 --------->MYB52(1)            --------->HSFC1(2)
                          <-----------------------TaNAC69(2)   <---------HSFC1(2)
                    <---------TOE2(3)  ---------->DOF2         <---------At4g35610
----YAB1       --------->YAB1   --------->ZAT18 <---------LBD16--------->HSFB2a(1) <-------TEIL
 
agagaggcatttttccaagaatgaaggaagacgagcgaaccgaaaaggctatccggagtttattgaagcttcctgagaaccggagatgcatcaattgcaa  15738400
          --------->REM1(1)
      <------MYB83
      <------MYB46(1)                  --------->ATHB12
     <---------------AtSPL8           <-------TEIL
     --------------->AtSPL8       <-------TEIL
     --------->MYB111(1)          ------->TEIL
     <---------MYB46(3)        <---------ANAC55(2)
     --------->MYB111(2)      --------------->AtSPL3
     --------->MYB59          <---------TOE1(2)            ------>ZmHOX2a(2)
     --------->MYB46(2)    --------->YAB1               --------->YAB1                         <----
    <--------P       <---------At4g35610               <---------ATHB12                      -------
    <---------MYB55(1)    <---------YAB1   <-----------RAV1(1)--------->At4g35610            -------
   <---------MYB52(1)--------->At4g35610   <---------MYB46(3) <---------At4g35610           <-------
 
tagtctggttggtacaacatttttagctgatcatacgtacattcatttgttggagccaatgatccatctgaatagctcattgttgtctaacatgtgaatc  15738500
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AGI:  At4g32630.1   
Description:  ARF GTPase activator/ zinc ion binding. similar to human Rev interacting-like protein-related / hRIP protein-related [Arabidopsis thaliana] (TAIR:AT4G13350.1); similar to human Rev interacting-like protein-related / hRIP protein-related [Arabidopsis thaliana] (TAIR:AT4G13350.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO65556.1); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164)
Range:  from: 15737974    to: 15741746    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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