Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               <--------ATHB1                                                       --------->YAB1                                                  --------->AHL20(2)                                                <---------TOE2(3)                      --------------            --------->GLK1(1)             <---------AHL20(2) --------->YAB1      --------->TOE1(3)            <---------GLK1(1)             --------->AHL20(2)<---------ATHB51     --------->TOE2(3)     <-----------RAV1(1)              <---------AHL20(2)  --------->YAB1   <---------REM1(1)    <---------TOE2(3)   ============================================================================= --------DAG2           <---------------AGL15 <---------AHL20(2)       <---------AHL20(2) ---------DOF2   --------->YAB1----------->GT1--------->AHL20(2)       --------->AHL20(2)  <---------AHL20(2)   acttttaatgtgggatttctcataaactatatacagttatatttttaattaatgaaataacaataatacagatttaaatgtagccttaactatttttatg  13354600                                                                      <------MYB46(1)                  <---------AHL20(2)                                 --------->MYB59                 --------->AHL20(2)                                  --------------->AtSPL3                 <---------AHL20(2)                                  <---------------AtSPL8             --------->AHL20(2)                                   --------->ATHB12             <---------AHL20(2)                                  <---------YAB1            --------->AHL20(1)                               --------->ARR11(3)                     -            <---------AHL20(1)                               <---------AHL20(2)                    <-  <---------AHL20(2)                                         --------->AHL20(1)          <------ZmHOX2a(1)  --------->AHL20(2)                                   ----------->GT1<------MYB83   --------->TOE2(2) ->AGL15    <---------AHL20(2)               ----------->GT1 <---------AHL20(1)      --------->TOE1(2) ==MADS_MADS--------->AHL20(2)  --------->YAB1      --------->GLK1(2)--------------->AtSPL8        --   aaatttaaatgaaatttaatttaaaagattgcattcagaatacaaaactgtaatattctgtaaaatattgataggtactacttacaacataggaaacata  13354700                                                           <---------AHL20(2)                                                           --------->AHL20(2)                                                         <---------AHL20(2)                                                         --------->AHL20(2)                                                       --------->AHL20(2)                                                       <---------AHL20(2)                                                     --------->AHL20(2)                                                     <---------AHL20(2)                                                   <---------AHL20(2)                                                   --------->AHL20(2)              <---------AHL20(2)                 --------->AHL20(2)       ----------->GT1                           <---------AHL20(2)     --------->CCA1(2)                         --------->AHL20(2)    --------->ARR11(1)                         <---------AHL20(2)      ---------->DOF2           ----    --------->ARR11(3)                       <---------AHL20(2)     <----------ID1               ----    <---------ARR11(3)                       --------->AHL20(2)     <---------ANAC55(2)          ---- <---------TOE2(3)                         --------->AHL20(2)       <---------YAB1          <-------- --------->DOF2           ----------->GT1 <---------ARR11(3)  --------->AHL20(1)            --------- --------AHL20(2)  --------------->AGL15  --------->AHL20(1)  <---------AHL20(1)            <-------- ------->AHL20(2)  <---------------AGL15  <---------AHL20(1) <---------AHL20(2)  --------->AHL20(2)   tttaaagatatgttatataaactaaaaatagtttaaaatatcaatatatatatatatatatatatatattacgaaaagaagaattaaaacagactacaca  13354800                                                                  <---------ARR11(3)                                                                  --------->ARR11(3)                                                 <---------AHL20(1)                                                 --------->AHL20(2)                                                 --------->AHL20(1)                                             <---------AHL20(2) <---------YAB1    <---------AHL20(2)                  --------->AHL20(1)    --------->YAB1   <---------AHL20(1)                  --------->AHL20(2)    --------->ICU4   --------->AHL20(2)                  --------->YAB1--------->AHL20(2)   <---------AHL20(2)                 <---------ATHB51--------->AHL20(2) ----->ANAC55(1)                      <---------ATHB12<---------AHL20(2) ----->ANAC46      --------->ZAT6  --------------->AGL15  <---------AHL20(2) ----->YAB1   --------->YAB1    <---------ARR14(2)<---------AHL20(2) -REM1(2) <---------YAB1        --------->ARR14(2)--------->AHL20(2) <----------DOF2         >>>>>>>> >ZAT14  <---------AHL20(2)    --------->GLK1(1) <---------AHL20(2) ------>ZmHOX2a(2)   --------->ANAC46 -ZAT14  --------->AHL20(2)  --------->YAB1 --------->AHL20(2)<---------ICU4   <-----------GT1   cataataaaattttaatagtaacacttacaaacatatccaataatattaaataaaattaattcattatgatctttatgttatttctatatactcaaacca  13354900                                     <---------YAB1                                   --------->ATHB51                                   <---------ICU4                                   <---------AHL20(2)                                   --------->AHL20(2)                                  <---------YAB1                                  --------->ICU4                                <---------ICU4                                             <---------                                <--------HAHB4                                       <---------RVE1(1)                               <---------YAB1                 <---------ARR11(3)     <---------CCA1(1)                             <---------ICU4                 --------->ANAC46        <---------ARR11(3)              -------->HAHB4<---------ATHB12                --------->ANAC58        --------->ARR11(3)              --------->ATHB12 --------->ICU4       <---------AHL20(2)       <---------AHL20(2)       ----------->GT1    --------->WOX13(1)        --------->AHL20(2)    <---------AHL20(2)        *TSS  ---------->DOF2       ------------>CBF         --------->TOE2(3)        --------->AHL20(2)       -- >>MYB80     <---------ATHB12--------->YAB1    <-------TEIL --------->ANAC58 --------->AHL20(2)    <-   aaaaaaaagaagtaaatgattcaaaatccaatcataattatttttcaaattcattaaaatacaagaaatttcatattaaaaaaatagatatttctttcaa  13355000                                                                                 ---------->DOF2               <---------YAB1   ----------->GT1                      <---------AHL20(1)             --------->YAB1    --------->ANAC58                     --------->ATHB51  <---------AHL20(2)<---------ARR11(3)     <---------------AtSPL8   --------->AHL20(2)  --------->AHL20(2)--------->AHL20(1)    --------->AHL20(2)       <---------MYB52(1)  ----------->GT1 -DOF2       --------->AHL20(2)--------->ANAC58<-------TEIL <----------DOF2 --------------->AGL15 ------->ARR11(3)   --------->ARR11(3)<---------AHL20(2)   <---------ICU4   <---------------AGL15  <- --------ARR11(3)  --------->AHL20(2) --------->AHL20(2)--------->YAB1<---------YAB1 ---------->DOF2   agatttatattcaaattataaatatatactaaaacgctaaaaaattaagtacatgctataatcttttccattatttttctaacaaaagaaagttatatat  13355100                                                                            --------->GLK1(2)                                                                           <---------GLK1(2)                                                                 ===================================HOX2a_HOX2a                                                                <------ZmHOX2a(2)                                                                --------->ARR14(1)                                                                ====================================HOX2a_HOX2a                                                                --------->CCA1(2)                                                               <---------ARR11(3)                                                               <---------ARR14(2)                  --                                                ----------->HVH21------>ZmHOX2a(2)                <--                                              --------->YAB1   --------->AGP1                <------ZmHOX2a(1)               <---------GLK1(1)             <-------TEIL      --------->ARR11(3)     ---------->DOF2              ---------->DOF2         <---------AHL20(2)       --------->ARR14(2)     --------->MYB52(1) --------------------WRI1<----------ID1---------->DOF2--------->LBD16   <-----------------AGL1 <-----   gggctaaacttagaaggaaagcccaagaggccaagactatataaagattcatgacccgagtttaagatccgatttcagaatttgggactaaaggaggaca  13355200          ----------->GT1          <------NtERF2         --------->LBD16         ------>NtERF2        <---------ANAC46        <---------LBD16       <---------LBD16                                                                         ------       <------NtERF2                   --------->ATERF1(1)             <-------TEIL            <-----     ------->GAMYB                    <---------ATERF1(1)          --------->ANAC46    <---------ANAC58   --------->ANAC58                   <---------RAP2.3(1)          --------->ANAC58    <---------ANAC58   --------->ANAC58                   ------>NtERF2                --------->ANAC58  --------->ICU4 ---------->DOF2                     <---------RAP2.6(2)        <-------TEIL ======================== ----->GAMYB                 ----------->RAV1(1)                --------->WRKY18(1)  <---------YAB1 --------ID1              ----------->RAV1(1)               <---------TOE1(2)------>ZmHOX2a(1)<------ ----WRKY12              <----------ID1<------NtERF2   <-----------HVH21--------->REM1(1)     -------   acgacaagcgccgggaaaaaatcgagagcgacaacaatggcgccttcttcgtcgagcggtctcacgttcaagctacatcctctggtgatgcttaacatat  13355300                                                        --------->LBD16                                                    --------->DEAR3(1)                                                  ------>NtERF2                                         ------>NtERF2 <---------LBD16                                         <---------At4g35610                                        --------->RAP2.3(2)                                        --------->DEAR3(1)                                       --------->DEAR4(2)                       ------>NtERF2                                      --------->LBD16------>NtERF2             --------->ANAC46          --------->STY1(1)           ------>NtERF2--------->ATERF1(1)        <------NtERF2      <---------ZAT14                --------->ANAC46--------->MYB52(1)      <---------ATERF1(1)      --------->ZAT14    --------->At4g35610      <---------RAP2.3(1)        ------>NtERF2 <------ZmHOX2a(2)       --------->ZAT2--------->RAP2.3(1)                  --------->DEAR3(1) --->ARR14(2)            <---------At4g35610     --------->ANAC46           ----------->HVH21 ----ARR14(2)<---------ZAT6         <---------MYB55(2)<---------LBD16      --------->RAP2.3(1) =======HOX2a_HOX2a      <---------ZAT2<------NtERF2<---------ALFIN1      ------->GAMYB ---GLK1(1)  ----------->GT1        --------->MYB46(3)<------NtERF2      --------->DEAR3(1)         - -->GLK1(1) <---------TOE2(3)     ------>ZmHOX2a(1)----------->HVH21  --------->MYB46(3)            <   ccgatcacttcactagggttaaaactcagcttaatcctcccgccgcttcttgcgccaccgggaatggctccaacaacgccgacgcgatgttactgcaaaa  13355400                                                   ------>ZmHOX2a(2)                                                   =====================================HOX2a_HOX2a                                                  <------ZmHOX2a(2)                                                 --------->ARR14(3)                                                 --------->ARR11(3)                                                 <---------ARR14(3)                                                 <---------ARR11(3)                                                 --------->ARR14(2)                                                 --------->AGP1                                                 <---------ARR14(2)                                           <-------GAMYB                                        --------->SPL7                                        <---------TOE1(2)                     =======================                    --------->At4g35610<---------SPL1(1)                      <------ZmHOX2a(2)                <-----------HVH21     <---------SPL7                         <---------ARR14(2)                <-----------TGA1     <---------ANAC58             --------->ZAT2               <---------ANAC46      <---------ANAC58             --------->At4g35610           -----              <------NtERF2  --------->LBD16   ----------->ARR10  <---------At4g35610           <----            <---------RAP2.3(3)     <---------------AtSPL3        <---------ZAT2 ==================== -------->STY1(1)   <---------At4g35610--------->SPL1(1)       <---------ANAC58  ------>ZmHOX2a(1) ---------STY1(1)--------->TGA2(2) <------------------SPL14    <---------ANAC58  ====================   ccctagggtttatggctgcgtcatcggtctccagagaggtcgtacggttgagatcttcaacagtttcgagctgatattcgatcctgctcttgatactctc  13355500  Previous    Next  AGI:  At4g26430.1    Description:  CSN6B (COP9 SIGNALOSOME SUBUNIT 6B). Identical to COP9 signalosome complex subunit 6b (CSN6B) [Arabidopsis Thaliana] (GB:Q8W1P0;GB:O65591;GB:Q8RXW5;GB:Q8W205); similar to CSN6A (COP9 SIGNALOSOME SUBUNIT 6A) [Arabidopsis thaliana] (TAIR:AT5G56280.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66861.1); contains InterPro domain Mov34-1 (InterPro:IPR003639); contains InterPro domain Mov34/MPN/PAD-1 (InterPro:IPR000555) Range:  from: 13355000    to: 13357610    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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