Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       <---------ARR14(2)                                                     --------->ARR14(2)                         -----             --------->LBD16                   --------->DAG2                                  ------            --------->RAP2.6(2)              ---------->DOF2                                   ------         ------>MYB46(1)                 <---------HSFB2a(2)                                   ------         --------->ANAC58          <---------------AGL15                                     --------         --------->ANAC46          --------------->AGL15                          <---------AHL20(2)         ------>MYB83             ----------------->AGL2                         <---------AHL20(2)    --------->ANAC58              ----------------->AGL1                         <---------AHL20(1)    --------->ANAC58              ----------------->AG            --------->At4g35610      <---------ATHB12 -----------HVH21                 <-----------------AGL2          <---------At4g35610<-----------GT1 ----YAB1--------->ANAC58         ----------------->AGL3 <---------YAB1          --------->AHL20(2)   cttgtcacaccaagccgcatagatgactgaatcgtttccaattctagtaaaggcgaattttcatttgcagctaaaatttccaatttttttcaaatcaacg  13335800                                                              <---------RAP2.3(1)                                                             <---------RAP2.3(2)                                                         <---------ANAC58                                                         ==============================bZIP_DOF                                                         <---------ANAC46                                                         <---------ANAC58                                                    --------->At4g35610                                                    <---------At4g35610                                                    --------->ZAT2                                                    <---------ZAT2                                                  --------->ZAT18                                       --------->At4g35610   <---------DEAR3(1)       <---------At4g35610      <---------YAB1                   <---------HSFC1(2)--------->TGA1a              <------NtERF2 -->GAMYB               --------->DAG2 --------->HSFC1(2)<---------TGA1a             --------->RAP2.6(2) --->ANAC46            ---------->DOF2 <---------At4g35610 --------->ALFIN1         <---------DEAR3(1) --->ANAC58            ============================================bZIP_DOF <----------DOF2 --->ANAC58    <---------ARR14(2)     ------->TEIL<---------ZAT18     <------ZmHOX2a(1)        ------ ->MYB52(1)    --------->ARR14(2) <---------------------WRI1--------->SPL7--------->At4g35610<-------   aaacgattacgatttcagaaacgcttaaagtgagaaaacgaagcttacagagcgagctcgcgtgcggctcgaggactgcttaatcggccgctcttatcaa  13335900                              --------->ANAC46                             --------->LBD16                             <---------LBD16                             <---------At4g35610     --------->ZAT18                             ------>NtERF2           <---------ZAT18                             --------->At4g35610  ---------->DOF2                           <---------LBD16  <---------SPL7                          ------>ZmHOX2a(1)<---------ANAC58                         <---------ALFIN1  <---------ANAC58                      <---------ALFIN1     <---------ANAC46                     <---------At4g35610  <------NtERF2  <----------DOF2                 <-----------HVH21       <---------ORA47(2)                <----------DOF2          <------------------SPL14    ----------->GT1      <------NtERF2<-----------GT1      <---------RAP2.3(3)       <------NtERF2 --->WOX13(1)<---------ARR11(3)         <---------DEAR3(1)  <---------HSFB2a(2)       --------->ZAT14 --YAB1      --------->ARR11(3)--------->LBD16--------->SPL7--------->HSFB2a(2)  <---------RAP2.6(3)-   tcttcggcatcgggacatctttcacctcctccgcggaaatagtcggcgtacggagagcgcttctagtcggagagagaaatagccgtagtgaagacgatga  13336000                                          <------NtERF2                                         <------NtERF2                                         --------->LBD16                                        <---------DEAR3(1)                    --------->ANAC58   <---------LBD16                    --------->ANAC58--------->WRKY12                             --------->GLK1(2)               --------->SPL7       --------->WRKY38(1)                          --------->ARR14(2)              <-----------HVH21    <---------MYB52(1)                            <---------ARR14(2)              <---------MYB52(1)  <-------GAMYB                                 <---------GLK1(2)         <-----------GT1         --------->MYB52(2)  --------->MYB46(3)    --------->At5g28300        <-----------GT1          <---------MYB46(3) -------->P    ------>ZmHOX2a(1)  ----------->GT1 ------>TEIL <---------SPL7     <-------TEIL       --------->WOX13(1)     ----------->GT1   <--------   cgaacgtttatttcccgttcgcagggaaaccaagttcgttggccggagcgaatcaaccaatgtaaatcctatagaacggtgagaatctggtgaaacatta  13336100                                         <---------ANAC46                                        <------NtERF2                                  ---------->DOF2    --------->ANAC46            <---------At4g35610                               --------->ANAC58--------->HSFB2a(1)        <----------DOF2                           --------->ANAC58    <---------HSFB2a(1)        --------------------->WRI1                      >>>>>>>>>TBF1   <---------DEAR3(1)               <---------ARR11(3)                <-------TEIL   --------->ANAC58--------->HSFC1(2)  <---------ANAC58             <---- -ICU4 --------->MYB52(1)  --------->ANAC58    <---------HSFC1(2)  <---------ANAC58     <---------ANAC46   ctggagaagtaacagaggttcgaagaagaacgtaagcaaagcggcgagaaggttccctccatttttgtttcgagctctttttctgcttcgccgtgttagt  13336200                                                            ----------->GT1                                                            <------ZmHOX2a(1)                    --------->LBD16                       ------------------------>ANAC81                   ----------->GT1                      ---------->DOF2                   --------->At4g35610                   --------->TOE2(3)               --------->LBD16                        <---------At4g35610                   --------->ANAC46                ----------->GT1                       --------->GLK1(2)                <---------ARR14(2)                <---------HSFB2a(2)               ---------->DOF2--                --------->ARR14(2)                --------->ANAC46    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               --------->GLK1(1)                 <---------LBD16     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------GLK1(1)             <---------ARR11(3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------TOE2(3)                 --------->ARR11(3)     xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------DOF5.7(2)          *TSS --------->RVE1(1)      xxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->At4g35610 ----------->GT1  --------->CCA1(1)------------------------>ANAC81      --- -----ZAT6--------->MYB52(1)        <----------ID1--------->HSFB2a(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   gtgagaagcagataacgatatccgtaaaattgaaaaaaaaaacaaaatatctccggaaaaaaggattaaaaaaaaaaaaaaaaaaaaaaagaagctgaaa  13336300                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                   <x                                                                                                   --                                                                                                   <x                                                                                                   <x                                                                                                   <x                                                                                                   <x                                                                                                   <x                                                                                                  <xx                                                                 <-----------HVH21                <xx                                                                <xxxxxxxxxxxxxxxsmallRNA(se3)     <xx                                                               --------->TOE1(2)                  <xx                                                               --------->TOE2(2)                  ---                                                       <xxxxxxxxxxxxxxxxsmallRNA(se3)             <xx                                                     <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxx                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                 <xxx                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                  ----                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                  <xxxx                                             <-----------------AGL1                             <xxxx                                             <---------ANAC46 ----------->RAV1(2)               <xxxx                                             ----------------->AGL1                             <xxxx                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)              <xxxxxx --------->ANAC58                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                <xxxxxx --------->ANAC46             --------->ANAC58  <xxxxxxxxxxxxxxxxsmallRNA(s)          --------->ANAC46 --------->ANAC58             --------->ANAC58  <---------ARR14(2)----------->HVH21   --------->ANAC58 ------->ANAC46             ---------->DOF2--------->ZAT18------>ZmHOX2a(2)           --------->ANAC58 ------>TOE1(2)      --------->YAB1     <-----------RAV1(1)  ------->TEIL         <xxxxxxxxxxxxxxxxxx   cacacgacaacgttttagtctgatcaaaatgaaagccaaaaaatgtggcctatacagggatcgaacctgtgaccttcgcgttattagcacgacgctctaa  13336400              <---------ZAT18              --------->ZAT18            --------->ANAC58     <---------At4g35610     --------->At4g35610    <xxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxsmallRNA(i)  <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) ----->MYB83--------->ANAC46 ----->MYB46(1) xxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---------->RAV1(2) xxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------->MYB52(1) xxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---->GAMYB --------->ANAC58 xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------RVE1(1) xxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <---------CCA1(1) ----->MYB46(3)                           --------->ARR11(3)     <------------CBF xxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------ARR11(3)   <---------TOE1(2) xxxxxxxxxxxxxxxxxxxsmallRNA(se3)       ----------->ARR10      <---------TOE2(2) xxxxxxxxxxxxxxxxxxxsmallRNA(s2)  --------->ZAT18           <---------ANAC46                      --- xxxxxxxxxxxxxxxxxxxsmallRNA(i2)  --------->ZAT14           <---------ANAC58                      --- xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ZAT14           <---------ANAC58 ----------->HVH21    <-- xxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ZAT18      <---------GLK1(2)--------->GLK1(2)         --- xxsmallRNA(fl3)   *TSS       --------->ALFIN1     <---------LBD16   <---------YAB1     <----------DOF2   ccaactgagctaataggccactacgtttctaagtggtgcacttagatatttctctcggaatttcgtagattgtgattctgtgacagttttctttcaagac  13336500          ----------->RAV1(1)         <----------ID1        --------->ZAT18 ------>ANAC58 ------>ANAC55(2)          --------->CCA1(2)           <---------ARR11(3)                   --------- -------ANAC55(2)         --------->ARR14(2)           --------->ARR11(3)                   <-------- ------>ANAC58            <---------ARR14(2)         ----------->GT1    <-----------GT1     <--------   aagtatcaagtgcaacaaaaaaacatcggatatgggactcgtactcgtgttcatgaagataataaactctcatataactacttgactaaaacgatatatt  13336600                                                                                              <------                                                                                          xxxxxxxxxxx                                                                                         ------->GAMYB                                                 <---------TOE2(3)                <---------ZAT6                                            --------->ATHB12                    xxxxxxxxxxxxxxxxxxxxx                                           <---------YAB1                      <xxxxxxxxxxxxxxxxxxxxx                                           --------->ICU4                      <xxxxxxxxxxxxxxxxxxxxx                                         --------->ANAC55(2)      <---------TOE2(3)   <---------DOF5.7(2)                                         <---------ANAC55(2)     <-----------GT1<xxxxxxxxxxxxxxxxsmallRNA(s) >ARR11(3)                          --------->YAB1               --------->MYB52(1) --------->DOF5.7(2) -AHL20(1)                          --------->ANAC46           <---------MYB52(2) <xxxxxxxxxxxxxxxxxx -ARR11(3)                          <---------ICU4     <-----------GT1      <-----------GT1 ---------   cgtatgcattagaaaaaacaattgtatataactaataaacatcacatgattaagttttaactgcaaataacgattttgttaccactgttaacgctcgtta  13336700  Previous    Next  AGI:  At4g26370.1    Description:  antitermination NusB domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO22120.1); contains InterPro domain NusB/RsmB/TIM44; (InterPro:IPR006027) Range:  from: 13333733    to: 13336239    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g26375.1    Description:  pre-tRNA. tRNA-Ile (anticodon: AAT) Range:  from: 13336346    to: 13336419    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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