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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                          <---------HSFB2a(2)
                                                        <<<<<<<<<<AtWER
                                                    --------------->AGL15
                                                    <---------------AGL15
                                             <-----------ARR10
                                             <---------ARR11(3)                         --------->ATHB12
                                             <---------ARR14(2)                        <---------YAB1
                                --------->ZAT2     ----------------->AGL1       ---------->DOF2
                   ----------->GT1           --------->ARR14(2)              --------->ANAC58
           ----------->GT1     --------->ARR11(3)<-----------GT1      ----------->GT1  --------->ICU4
         ----------->GT1--------->CCA1(2)   <------ZmHOX2a(1)   >>>>>>>>>TBF1--------->ANAC58   ----
 
aaaccacaagtagagagaaaaatggagataagaagagctcggagagaggattttaccagttggagaagaagaagagaaataagcaaagtgatgatgggaa  13312700
                                     <-----------RAV1(1)
                                     --------->ALFIN1
                                     <---------REM1(1)
                                  <---------DEAR3(1)
                                  <---------AtMYB61
                                 <------NtERF2
                                 <---------ABI4(1)
                                 <-------GAMYB
                                <---------MYB46(3)
                               <---------DREB2C(2)
                               --------->ALFIN1
                               <---------DEAR3(1)
                              <---------ABI4(1)
                              <------NtERF2  ----------->HVH21
                             <---------RAP2.3(1)
                             <---------DEAR4(2)
                            <---------DEAR3(1)                        --------->ATHB12
                            <---------RAP2.3(3)            <-------GAMYB <-----------GT1
                            <---------RAP2.3(2)     ---------->DOF2   <---------ICU4
                           --------->RAP2.6(3)  <---------LBD16       --------->ATHB51
                     --------->CCA1(2)      <-----------HVH21 --------->MYB59
------->GT1         <----------ID1--------->ALFIN1--------->LBD16    <---------YAB1    <-----------GT1
 
cgagaaaaacgattcaaggagaagagacaagacggcggtggtgttgctgtgaccggaaagagggttaggcttattattgccatttccaattttctgtctc  13312800
                                                                          --------->ALFIN1
                                   <-----------GT1                      <-----------RAV1(1)
                                  <-----------GT1                     <---------ANAC46
                            <---------AHL20(2)               ----------->GT1
                         --------->AHL20(2)                  --------->ANAC55(2)
               <---------DAG2<---------AHL20(2)             <---------TOE2(3)       --------->AHL20(2)
          <-----------GT1<---------AHL20(2)                 <---------TOE1(3)    <------NtERF2
        <------------------------ANAC81                    <-----------RAV1(2)  ----------->GT1
  --------->AHL20(2) <---------AHL20(2)            <---------AHL20(2) <---------ANAC58      --------
  <---------AHL20(2)<---------AHL20(2)   <----------DOF2   =========================RAV<---------AHL20(1)
<----------DOF2<----------DOF2   <---------AHL20(2)<---------YAB1     <---------ANAC58 --------->AHL20(1)
 
tctctttaatttgtttccctttttttatttttttattttatcttctttttttttttaattgttcaggtaattttcgtgttgggccgaaaaaatattaggc  13312900
                                           --------->WRKY12                                      <--
                                     <---------GLK1(2)                                        <-----
                                     <---------ARR14(2)                              <---------TOE2(3)
                                     --------->ARR14(2)                         --------->ARR14(2)
          <------MYB83            ------>ZmHOX2a(2)                             <---------ARR14(2)--
          <------MYB46(1)        <------ZmHOX2a(2)                              --------->GLK1(2)---
         --------->MYB59        --------->ARR14(2)        <---------TOE2(3)------->GAMYB     -------
<---------ICU4          <---------YAB1 <-------TEIL      ---------->DOF2--------->MYB52(1)----------
->MYB59<---------MYB52(1)       <---------ARR14(2)  <---------TOE2(3) <---------ATHB12 <------ZmHOX2a(1)
 
ccattatgccattaggttactgtgtttattaatgcgatccgattcgttgaacatttaggctaaagttgaacaaatcaacggcgaatttgaggaagattaa  13313000
                                                        --------->MYB52(1)
                                                     ----------->ARR10
                                                    <------NtERF2
                                                   --------->LBD16
                                                  <---------DEAR3(1)
                                         <---------At4g35610
                               --------->At5g28300<---------ANAC46
                              ----------->GT1  ------>ZmHOX2a(2)
                              <---------MYB46(3) <---------LBD16          <---------TOE1(3)
-------AHL20(2)           <---------DEAR3(1)--------->ATHB12              <---------TOE2(3)
----AHL20(2)             <---------LBD16 --------->At4g35610             ---------->DOF2
------->AHL20(2)   --------->YAB1      <-----------RAV1(2)      <----------DOF2---------------------
------>AHL20(2)  --------->GLK1(2)   <-----------HVH21 <---------ARR14(2)<---------DOF5.7(2)
-->AHL20(2)      <-----------ARR10---------->DOF2--------->At4g35610   --------->DOF5.7(2)
->GT1       ----------->GT1  --------->ALFIN1  <---------DEAR3(1)   ---------->ID1              <---
 
ataaataagaagggatggagaatcataccacggtggtaaaagtcagatgatcggcggagaaacggagctttgtcgttaaagtttctcttctgttttcgtc  13313100
                                                   <-----------GT1                         ---------
                           <---------AHL20(2)   --------->AHL20(2)                      --------->LBD16
                     <---------YAB1         --------->AHL20(2)                         --------->DEAR3(1)
                  <---------YAB1           <---------YAB1                             <---------LBD16
                  --------->ICU4        <---------YAB1<---------ANAC58               --------->MYB52(1)
          ------->TEIL  ------->TEIL <----------DOF2  <---------ANAC58              ------->GAMYB
-->TaNAC69(2)   --------->YAB1<---------TOE2(3) <---------AHL20(2)                 --------->MYB46(3)
-------DOF2 --------->TOE1(2) <---------TOE1(3)<---------AHL20(2)                  <---------MYB55(2)
 
ttttgggaaaatgaacatatgatgatgaattttaagggttcttttgattatttatttccttgttaattcgttgaatatgtctcttaaccaccggggtaat  13313200
                               --------->AHL20(2)                             --------->TOE2(3)
                           --------->AHL20(2)                        --------->ZAT18
                         --------->TOE2(3)                      ---------->DOF2
                --------->ARR14(2)             <---------ARR14(2)    <---------ZAT18             ---
                ------->TEIL   <---------AHL20(2)             <---------MYB52(2)   <------------CBF
               --------->ARR14(2)      <---------ZAT2        ------>MYB83    <---------ANAC55(2) <--
        ------>ZmHOX2a(2)--------->YAB1--------->ZAT2        ------>MYB46(1) --------->ANAC55(2) ---
    <---------YAB1--------->TOE1(2)  --------->LBD16 --------->ARR14(2)      --------->ANAC46   <---
>At5g28300     <---------ARR14(2)<-----------GT1     <---------ARR14(2)  <----------DOF2     -------
 
agacattttgatcgacccgaacctgcaaacttaattaaaccgggctggactattcggatagaccaactaaagcgcggtttacgtcaaattggctattcag  13313300
            <---------ZAT14
       <---------ANAC58
------>GLK1(2)                                        <------------CBF
-------ARR14(2)                                      --------->ATHB12     ------->GAMYB   <---------ARR11(3)
------>ARR14(2)    <---------REM1(1)                <---------AHL20(2)  <---------At4g35610
------GLK1(2)    --------->At4g35610    --------->GLK1(2)      <---------ZAT14       <-------TEIL
-->YAB1<---------ANAC58             --------->YAB1  <---------YAB1      --------->At4g35610---------
 
aatctggttttcgtctgaacagatgaagcaaatatactctcagaatcaagcttatattattgatactgaagaggcaactgcatatagatgcaagataaac  13313400
                                                       --------->At4g35610
                          --------->At4g35610        <---------ICU4
                 ---------->DOF2          <----------DOF2
               --------->ANAC58        --------->ARR11(3)                <------ZmHOX2a(1)
          <---------TOE2(3)            <---------ARR11(3)               ----------->GT1
  ----------->HVH21       ----------->RAV1(2)        --------->YAB1     <----------ID1
--------->O2   --------->ANAC58  <------ZmHOX2a(1)--------->YAB1   --------->At4g35610
>CCA1(2)  <---------TOE1(3) ----------->HVH21  <----------DOF2   <------ZmHOX2a(1)
 
accaagtgacattaaggtaagaaagtagcacctgaaggattagacctttactttcatcatcagcaagaggagatgaggaaaaactcatcactgactcaag  13313500
                                                       ---------->ID1
                                                   <---------DAG2
                                                   <----------DOF2
                                                  <---------DAG2
                                                ------->TEIL
                                                -------->P
                                               <-----------GT1
                                              ------>ZmHOX2a(2)                                 ----
                                            --------->ARR11(3)                                 -----
                                            <---------ARR11(3)                                 -----
          ----------->GT1               --------->At4g35610  <---------HSFB2a(2)             -------
         <---------TOE2(3)              <---------At4g35610  --------->HSFB2a(2)--------->HSFB2a(2)
 
gatggagtttctaatgtaaatttgagcatcgtcttctaatatcagttgatctacctttttccctctggatgactcaaaatcgtctggataagcgagaata  13313600
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AGI:  At4g26300.1   
Description:  EMB1027 (EMBRYO DEFECTIVE 1027); ATP binding / arginine-tRNA ligase. similar to arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT1G66530.1); similar to hypothetical protein OsI_017894 [Oryza sativa (indica cultivar-group)] (GB:EAY96661.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65434.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ75273.1); contains InterPro domain Arginyl tRNA synthetase, class Ic, N-terminal; (InterPro:IPR005148); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains I
Range:  from: 13307986    to: 13313118    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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