Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------ANAC55(2)         --------->ANAC46         --------->ANAC58         --------->ANAC55(2)         --------->ANAC55(1)         --------->ANAC58  --------->At4g35610  <---------At4g35610                                                           <---------CCA1(2)  --------->ZAT2                                                      <---------CCA1(2)  <---------ZAT2                                                     <-----------ARR10 ---------ALFIN1                                                     <---------ARR11(1) -------->RAV1(1)                                                    <---------ARR14(2) ------------------>TaNAC69(2)                                       --------->ARR14(2)             < --->ANAC58  --------->ANAC58                   <----------DOF2      ------->TEIL                 --- --->ANAC46  --------->ANAC58             <---------MYB52(1)        <---------ARR14(1)   ------->MYC3 --->ANAC58>>>>>>>>>NAP        <---------TOE2(3)------>ZmHOX2a(1)   <---------CCA1(2)    <-------MYC3   ccacagcttgcacgtaagtaatacctatacattatcgtttattcgttatccttttttctcttactaaaccgtatctcttcgcttatctacatgtgtaatc  13307400              ----------->TBP              --------->AHL20(2)              <---------AHL20(2)            ----------->TBP                                                         <---------ARR11(3)     ------>MYB46(1)                                                              --------->ANAC58     ------>MYB83              <----------DOF2                           --------->ARR11(3) ---------ALFIN1         --------->ANAC46    ------------------------>ANAC81      --------->ANAC58 --->ZmHOX2a(1)     --------->ANAC46 --------->YAB1        <<<<<<<ZML2*TSS   <---------ETT(2)   <----   ctctacctccctctatatatatacaaaacacaacttttatcaaaaaaaaaaaaaaaaactagaacagaacacaaacatctcgacaagaactctctgttct  13307500                                                              <----------DOF2                     ---                                                           ---------->ID1                        <---                                                       <---------ANAC58                 <------ZmHOX2a(2)                         --------->ZAT14               <---------ANAC58                <---------ARR11(3)                 <---------ARR11(3)                <----------DOF2                     --------->ARR11(3)    --------->YAB1       <---------ZAT14    --------->ANAC58  =================================HOX2a_HOX2a   <---------YAB1--------->ARR11(3)         --------->ANAC58  ------>ZmHOX2a(1)    ---------->DOF2<-- ------DOF2  ---------->DOF2      <---------YAB1  <---------DAG2               ---------->DOF2-------   ttcttatcaaaaaaaaaaagaactctctgttctgttcttattgatcaagaaaccttttcttgtccttttggttaagacttcaaaagaaagatcaaatcag  13307600                                                                                                    -                                                                                                    -                                                                                                  ---                                                                                                <----                                                                                                -----          <---------WOX13(1)                                                                    -----        --------->ATHB12                                                                        -----       <---------YAB1                      --------->YAB1                                       <----     --------->YAB1                   <---------HSFB2a(2)                                       <---- ------>GLK1(2)                   --------->KAN4(2)                                            <----- ------GLK1(2)                   <---------KAN4(1)                                    <XXXXXXXXXXXXXX ---------ARR10 ---------->DOF2 ------->TEIL     --------->YAB1 ---------->DOF2  --------->ATHB12<--- -->YAB1--------->ATHB51   --------->CCA1(2)     --------->TOE2(3)             <-------GAMYB<--------   aatctaaacataattgacaaaagaagaagagatgaacattcgcgatggtaatcttatttcgactacaaaagaagaagagggtgttattggagtttcagga  13307700      ---------->DOF2 -------->At4g35610 ----->ZmHOX2a(1) --->ZmHOX2a(2)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -----ARR14(2)                                                          <<<<<<<<<TBF1 ---->ARR11(3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---->ARR14(2)                                                       <<<<<<<<<TBF1 ---->ARR14(3)                                              --------->HSFB2a(1) -----ARR14(3)                                              <---------HSFC1(2)         <<<<<<<<<TBF1 -----ARR11(3)                                              --------->HSFC1(2)<<<<<<<<<TBF1 -ZmHOX2a(1)                              --------->At4g35610      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) XXXXXXXXXMIR163                          <---------At4g35610     <<<<<<<<<TBF1     <<<<<<<<<TBF1 ---ZmHOX2a(2)               --------->ZAT6                 <---------HSFB2a(1)  <<<<<<<<<TBF1 -LBD16     <-------TEIL  <---------CCA1(2)              <------ZmHOX2a(1) <<<<<<<<<TBF1  <<<<<<<<<TBF1   tcctctgcaaaagtttcatcttcatcttctatctctatgtgttcatctgatttaacagaggatgcttcttcttcttcttcttcttcttcttcttcttcaa  13307800                           <---------CCA1(2)               <----------DOF2               <---------ANAC55(2)              ------>ZmHOX2a(2)              --------->ANAC55(2)             <------ZmHOX2a(2)             --------->YAB1            --------->ARR14(2)    --------->At4g35610            <---------ARR11(3)    <---------ZAT2                                                 <---            --------->ARR11(3)    <---------At4g35610                                    ------>ZmHOX2a(1)            <---------ARR14(2)    --------->ZAT2     --------->ZAT6                      --------->ICU4    <----------DOF2  --------->SPL7       <---------ATHB12     <---------LBD16           ============   atgggcctttcgacgatctttcggacctcatctctcagctccctatcatgtaatgacactaaatctctgggtgaaatattatctcacagtccttattctc  13307900                                                                                   ---------->DOF2                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                                              --------->WRKY18(1)                                                                            <---------At4g35610   ------>ZmHOX2a(2)                --------->GLK1(2)     ---------->ID1    --------->At4g35610  --------------->AtSPL8    <---------ZAT6      <------------CBF           --------->MYB59 -------DOF2   ---------->ID1    <---------TOE2(3)    <----------DOF2    <---------MYB52(1)  <------- =========HOX2a_HOX2a      >>>>>>>>>TAC1      <---------YAB1            <-----------HVH21 <------ZmHOX2a(1)   tttgatcgttccatcttgtctccatagacagtgttaagaatttgttttcttattgtctttgttttttttcttacagtcaggtcaagaaaggaggactttc  13308000                                                             ------>ZmHOX2a(2)                                                             ====================HOX2a_HOX2a                                                            =====================HOX2a_HOX2a                                                           --------->ARR14(2)                                                           --------->ARR11(3)                        --------->WOX13(1)                 <---------ARR14(2)                       -------->ATHB1                      <---------AGP1 <------ZmHOX2a(1)                       <---------ICU4                      <-----------ARR10                       --------->YAB1                      <---------ARR11(3)               <-----------ARR10                           --------->GLK1(2)               <---------ARR14(2)                          --------->ARR14(3)       ---------->DOF2<---------ATHB12                     <---------ARR14(3)      <---------YAB1--------->WOX13(1)                    <------ZmHOX2a(1) <------ZmHOX2a(2)    --------->YAB1------------>CBF                        =========================HOX2a_HOX2a   <---------YAB1--------->TOE2(3)                        <---------GLK1(2)--------->ARR11(3) ---DOF2      <---------CCA1(2)            <-----------HVH21<------ZmHOX2a(2)                     ---   aaagtattataaaggcaaatctcaatcattcacatctctagcaaatgtcacaagtctacaggatcttgtgaagagaggatcaagaacgaagtcatgctgc  13308100                                                    <---------HSFB2a(1)                                                    --------->HSFB2a(1)                                                   ----------->ARR10                                         --------->ANAC58                                         --------->ANAC46                            --------->MYB46(3)     <---------KAN4(2)                               --                           ------------>CBF   --------->O2                                        <--                          ----------->RAV1(1) <---------O2                              <-----------GT1                       --------->ANAC58  --------->ANAC58                          --------->TOE1(3)                       --------->ANAC58---------->DOF2   ------>ZmHOX2a(1)         --------->TOE2(3) ------->DOF2       ---------->DOF2  --------->AtLEC2   --------->TOE2(3)       <-----------GT1   ---   aaaagggattatttctatggaccaaaggcaacaatctccatgaaagccacgagaacatcctcaaaacattcaaattcaagattaacctttaaaccatttc  13308200                    ----------->HVH21           <---------ATHB12     --------->ANAC46    ----------->HVH21     --------->ANAC58  --------->bZIP60(1)     --------->ANAC58  <---------bZIP60(1)            <---------TOE2(3)                            <- ------->ATHB12 --------->ZAT14                       <---------YAB1                   --------->ANAC58 -------YAB1    <---------ZAT14                      <-----------GT1                   --------->ANAC58 ------>ICU4  --------->At4g35610             <-------TEIL      --------->ATHB12     <---------ALFIN1   atgattcacccaaatcagttcaatgacatgacaaaacaaccttctgggttcagtttaacattgtattcatttgtatacaagtttgccccaagctaaatga  13308300  Previous    Next  AGI:  At4g26288.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G56550.1) Range:  from: 13307470    to: 13308962    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g26290.1    Description:  unknown protein Range:  from: 13307604    to: 13307831    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g26300.1    Description:  EMB1027 (EMBRYO DEFECTIVE 1027); ATP binding / arginine-tRNA ligase. similar to arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT1G66530.1); similar to hypothetical protein OsI_017894 [Oryza sativa (indica cultivar-group)] (GB:EAY96661.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65434.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ75273.1); contains InterPro domain Arginyl tRNA synthetase, class Ic, N-terminal; (InterPro:IPR005148); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains I Range:  from: 13307986    to: 13313118    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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