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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                   --------->YAB1
                                             <---------ARR11(3)                  --------->AHL20(2)
                                             --------->ARR11(3)                 --------->YAB1
                                       ----------->GT1                     --------->AHL20(2)
                                 --------->HSFB2a(2)                      --------->YAB1  --------->CCA1(2)
                --------->YAB1   <---------HSFB2a(2)                 --------->AHL20(2)<---------TOE2(3)
     <----------DOF2            ------>ZmHOX2a(2)           <---------AtLEC2 --------->YAB1        <
    --------->TOE2(3)         --------->ARR11(3)   --------->HSFB2a(2)   --------->AHL20(2) --------
->YAB1  ---------->DOF2       --------->AGP1<---------CCA1(2)  ----------->GT1 --------->AHL20(2)  <
 
acaatttcctttaaagcattcacaacaatttctgatctagaatggttatatctactcgaatttgaatggaaaaaaaataaaaataaaaataagataaaag  13307100
                                                                           <---------AHL20(2)
   <---------DAG2                                                    <---------AHL20(2)            -
   --------->TOE1(3)                                                 --------->AHL20(2)          ---
   --------->TOE2(3)     ----------->GT1                            <---------AHL20(2)        <-----
---------WRKY12      <---------YAB1                              <---------ICU4            <------ZmHOX2a(2)
-->DOF2             <---------ARR11(3)                        --------->YAB1       <---------ARR14(2)
---------WRKY38(1)  --------->ARR11(3)                    <---------MYB46(3)       --------->ARR14(2)
 
agtcaaccttatgtccaattcaagataattgttaaaaaaacaatccaaaattcgatttcagtcgttcataatttatattcaattgggatttgggatcaag  13307200
                                                        --------->AHL20(2)
                                                        <---------AHL20(1)
                                                        <---------AHL20(2)                         <
                                                     --------->YAB1                              ---
          <---------DAG2                           <---------WOX13(1)                          -----
          --------->TOE2(3)                        <---------YAB1                             ------
      <---------WRKY38(1)                        --------->ATHB12                             ------
      <---------WRKY12                          --------->ICU4                       --------->DOF5.7(2)
--------->DOF2                              <---------GLK1(2)<---------YAB1         --------->TOE2(3)
------>CCA1(2)        <---------YAB1 --------->AHL20(2) --------->AHL20(1)          --------->TOE1(3)
----YAB1  --------->TOE1(3)      ----------->GT1<---------YAB1              ----------->GT1   ------
 
ataaaagagtcaaccttatgtttttatgagaggctagagaaaaaatagattatgattaataaatttgatagaagaaacagagtaaaacgttatccacagg  13307300
        <---------ANAC55(2)
        --------->ANAC58
        --------->ANAC58
        --------->ANAC46
        --------->ANAC55(2)
        --------->ANAC55(1)
 --------->ZAT2
 --------->At4g35610                                                           <---------CCA1(2)
 <---------ZAT2                                                      <---------CCA1(2)
 <---------At4g35610                                                <---------ARR14(2)
---------ALFIN1                                                     --------->ARR14(2)
-------->RAV1(1)                                                    <---------ARR11(1)
------------------>TaNAC69(2)                                       <-----------ARR10              <
--->ANAC46  --------->ANAC58                   ------>ZmHOX2a(1)    ------->TEIL                 ---
--->ANAC58  --------->ANAC58             <---------MYB52(1)        <---------CCA1(2)    <-------MYC3
--->ANAC58>>>>>>>>>NAP        <---------TOE2(3)<----------DOF2     <---------ARR14(1)   ------->MYC3
 
ccacagcttgcacgtaagtaatacctatacattatcgtttattcgttatccttttttctcttactaaaccgtatctcttcgcttatctacatgtgtaatc  13307400
             <---------AHL20(2)
             ----------->TBP
             --------->AHL20(2)
           ----------->TBP                                                         <---------ARR11(3)
    ------>MYB83                                                                 --------->ANAC58
    ------>MYB46(1)           <----------DOF2                           --------->ARR11(3)
---------ALFIN1         --------->ANAC46    ------------------------>ANAC81      --------->ANAC58
--->ZmHOX2a(1)     --------->ANAC46 --------->YAB1        <<<<<<<ZML2*TSS   <---------ETT(2)   <----
 
ctctacctccctctatatatatacaaaacacaacttttatcaaaaaaaaaaaaaaaaactagaacagaacacaaacatctcgacaagaactctctgttct  13307500
                                                             <----------DOF2                     ---
                                                          ---------->ID1                        <---
                                                      <---------ANAC58                 <------ZmHOX2a(2)
                        <---------ZAT14               <---------ANAC58                --------->ARR11(3)
                --------->ARR11(3)                <----------DOF2                     <---------ARR11(3)
   --------->YAB1       --------->ZAT14    --------->ANAC58  =================================HOX2a_HOX2a
  <---------YAB1<---------ARR11(3)         --------->ANAC58  ------>ZmHOX2a(1)    ---------->DOF2<--
------DOF2  ---------->DOF2      <---------YAB1  <---------DAG2               ---------->DOF2-------
 
ttcttatcaaaaaaaaaaagaactctctgttctgttcttattgatcaagaaaccttttcttgtccttttggttaagacttcaaaagaaagatcaaatcag  13307600
                                                                                                   -
                                                                                                   -
                                                                                                 ---
                                                                                               -----
                                                                                               <----
         <---------WOX13(1)                                                                    <----
       --------->ATHB51                                                                        -----
      <---------YAB1                      --------->YAB1                                       -----
    --------->YAB1                   <---------HSFB2a(2)                                       <----
------>GLK1(2)                   --------->KAN4(2)                                            <-----
------GLK1(2)                   <---------KAN4(1)                                    <XXXXXXXXXXXXXX
---------ARR10 ---------->DOF2 ------->TEIL     --------->YAB1 ---------->DOF2  --------->ATHB12<---
-->YAB1--------->ATHB12   --------->CCA1(2)     --------->TOE2(3)             <-------GAMYB<--------
 
aatctaaacataattgacaaaagaagaagagatgaacattcgcgatggtaatcttatttcgactacaaaagaagaagagggtgttattggagtttcagga  13307700
     ---------->DOF2
----->ZmHOX2a(1)
-------->At4g35610
--->ZmHOX2a(2)                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
---->ARR14(3)                                                          <<<<<<<<<TBF1
-----ARR14(3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
-----ARR11(3)                                                       <<<<<<<<<TBF1
---->ARR11(3)                                              <---------HSFC1(2)
---->ARR14(2)                                              --------->HSFB2a(1)        <<<<<<<<<TBF1
-----ARR14(2)                                              <---------HSFB2a(1)     <<<<<<<<<TBF1
-ZmHOX2a(1)                              --------->At4g35610      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
XXXXXXXXXMIR163                          <---------At4g35610     <<<<<<<<<TBF1  <<<<<<<<<TBF1
---ZmHOX2a(2)               --------->ZAT6                 --------->HSFC1(2)<<<<<<<<<TBF1
-LBD16     <-------TEIL  <---------CCA1(2)              <------ZmHOX2a(1) <<<<<<<<<TBF1  <<<<<<<<<TBF1
 
tcctctgcaaaagtttcatcttcatcttctatctctatgtgttcatctgatttaacagaggatgcttcttcttcttcttcttcttcttcttcttcttcaa  13307800
                          <---------CCA1(2)
              <----------DOF2               --------->ANAC55(2)
             ------>ZmHOX2a(2)              <---------ANAC55(2)
            <------ZmHOX2a(2)             --------->YAB1
           <---------ARR11(3)    --------->ZAT2
           <---------ARR14(2)    --------->At4g35610                                            <---
           --------->ARR14(2)    <---------ZAT2                                         ------>ZmHOX2a(1)
           --------->ARR11(3)    <---------At4g35610--------->ZAT6                      ============
   <----------DOF2  --------->SPL7       <---------ATHB12     <---------LBD16           --------->ICU4
 
atgggcctttcgacgatctttcggacctcatctctcagctccctatcatgtaatgacactaaatctctgggtgaaatattatctcacagtccttattctc  13307900
                                                                                  ---------->DOF2
                                                                                --------->ANAC58
                                                                                --------->ANAC58
                                                                             --------->WRKY18(1)
                                                                           --------->At4g35610
  ------>ZmHOX2a(2)                --------->GLK1(2)     ---------->ID1    <---------At4g35610
 --------------->AtSPL8    <---------ZAT6      <------------CBF           --------->MYB59
-------DOF2   ---------->ID1    <---------TOE2(3)    <----------DOF2    <---------MYB52(1)  <-------
=========HOX2a_HOX2a      >>>>>>>>>TAC1      <---------YAB1            <-----------HVH21 <------ZmHOX2a(1)
 
tttgatcgttccatcttgtctccatagacagtgttaagaatttgttttcttattgtctttgttttttttcttacagtcaggtcaagaaaggaggactttc  13308000
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AGI:  At4g26288.1   
Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G56550.1)
Range:  from: 13307470    to: 13308962    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At4g26290.1   
Description:  unknown protein
Range:  from: 13307604    to: 13307831    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g26300.1   
Description:  EMB1027 (EMBRYO DEFECTIVE 1027); ATP binding / arginine-tRNA ligase. similar to arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT1G66530.1); similar to hypothetical protein OsI_017894 [Oryza sativa (indica cultivar-group)] (GB:EAY96661.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65434.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ75273.1); contains InterPro domain Arginyl tRNA synthetase, class Ic, N-terminal; (InterPro:IPR005148); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains I
Range:  from: 13307986    to: 13313118    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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