Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  --------->LBD16                                <---------SPL7                              --------->ATERF1(1)                              <------NtERF2                             <---------RAP2.3(1)                             ------>NtERF2                                        --------->YAB1                      --------->ARR11(3)                                         <---------YAB1               ---------->DOF2<---------LBD16                                  <---------ICU4           --------->LBD16  <---------DEAR3(1)                                --------->ICU4          <---------------AGL15<---------ANAC46                               <---------YAB1          --------->LBD16 <---------ATERF1(1)                              --------->ICU4           -          --------------->AGL15--------->DEAR3(1)                        --------->At4g35610       --         <---------LBD16----------->RAV1(2)         --------->ICU4       <---------At4g35610 --------   gtgtatcgtttcccgcataaagaagaccctgcgccggacaaaaacatgtaagtaattctgaaattcgaaaatgtgagatgatgattatagtcgaaacata  13102200                    --------->YAB1                   <------ZmHOX2a(2)                                     --------->LBD16                   ==============HOX2a_HOX2a                          --------->CCA1(2)                --------->LBD16                                      --------->ARR14(2)               --------->HSFB2a(2)                                   <---------ARR14(2)              --------->SPL7                                         --------->ARR11(3)          <---              <---------LBD16                                        --------->AGP1              <---             <------NtERF2                                 ==================HOX2a_HOX2a        <----            <---------SPL7        <---------At4g35610      ------>ZmHOX2a(1)       <-----------RAV1(2)           <---------ANAC58<---------ARR14(2)       <---------WOX13(1)<------ZmHOX2a(2)       -------      ---------->DOF2     <------ZmHOX2a(1)       --------->ATHB12   <---------ARR11(3)   <---------WOX13(1) -------->TOE2(2) <---------ARR14(2)             <---------AHL20(2) <---------GLK1(1)   --------->ATHB12 --------->RAV1(2)--------->ARR14(2)  <---------MYB111(1)------>ZmHOX2a(2)      <---------ARR14(2) <- ->YAB1    <---------ANAC58--------->ARR14(2)    <---------YAB1     --------->GLK1(1)  <---------YAB1   aacctgagtaaaggcgtccggatcatgaggaaactcagcaactacttcaatttcattgatcctatgggagagatccagagaagaaccagatgattggccc  13102300                                   --------->LBD16                                  --------->DEAR3(1)                                  <---------ANAC46                                 --------->RAP2.3(1)                                 <---------LBD16                                 --------->ATERF1(1)                                        ---------                                 <------NtERF2                                              <------NtERF2                                <---------RRTF1(1)                                         <---------ATERF1(1)                                <---------RAP2.3(1)                                        <---------DEAR4(2)                                <---------ATERF1(1)                                        ------>NtERF2                                <---------RAP2.6(1)                                        <---------ERF1                                ------>NtERF2                                             <---------DEAR3(1)                                <---------ERF1                                            --------->DEAR3(1)                               <---------DEAR3(1)                                         <---------RAP2.3(3)                               <---------RAP2.3(2)                                        <---------RAP2.3(2)                               --------->DEAR3(1)                                         --------->ATERF1(2)                              <---------ABI4(2)                                           <---------ATERF1(2)                              --------->RAP2.3(1)                  ------->TEIL          <---------ABI4(1)                              --------->ATERF1(1)              <---------HSFB2a(2)       --------->ATERF1(1)                             <---------ATERF1(1)               --------->HSFB2a(2)       <---------LBD16     --------->ATHB12        <---------RAP2.3(1)           <---------ICU4              <---------DEAR3(1) --------RAV1(2)            --------->ANAC46            --------->YAB1               ------->TEIL ------ALFIN1             --------->MYB52(1)            <---------ICU4               --------->ARR14(2) --NtERF2              <------ZmHOX2a(1) <------ZmHOX2a(1)<---------YAB1    --------->HSFB2a(2) -->PCF2             ----------->GT1<------NtERF2      --------->ICU4       <---------HSFB2a(2) --------ZAT2 ---------->DOF2<---------DEAR4(2)     <------ZmHOX2a(1)       --------->LBD16<---------RAP2.3(1)   cagctattgaatggcataaagaataggaaaacggcgccggagaggagagcaagaggaatcatcatcgcgaacctcttccgagaaatgaatcggcggcgag  13102400                                                                              <-----------GT1                                                                <------ZmHOX2a(2)              --------->ZAT2                          --------->YAB1  --------->ANAC46          <----              --------->At4g35610     ------>ZmHOX2a(2)   --------->DAG2<------NtERF2          <-----         >>>>>>>>>TBF1         --------->YAB1<---------MYB52(1)--------->ARR11(3)            -------- >ATERF1(1)  --------->GLK1(2) --------->ATHB12  ---------->ID1<---------ARR14(2)            <-------   atgatgcagaagaagaagctggaagagactgaatcatggatcgcttcgtttgtctcttataaggcgatctagtcgccattaaacttcattcgcagtcgtt  13102500                                                                                       *TSS                                                                                  <-------GAMYB                                                                   --------->CCA1(2)   --------->WRKY38(1)                                                           --------->ICU4        --------->ALFIN1                                                      ----------->GT1            <-----------RAV1(1) -----TOE1(2)                                         --------->ANAC55(2)  ---------->DOF2 ----MYB52(1)                                 <----------DOF2      <---------GLK1(1)<---------MYB46(3) ->MYB55(2)                          ----------->HVH21--------->ANAC58     <---------DOF5.7(2) --MYB46(3)                       <---------AGP1      --------->ANAC58   --------->DOF5.7(2)   ggattggaaattgcagtctgtcaaatttgatttgtagctctgaccagactttggcaacgtaattttgagaaatgcgttaaagtgtgttgttgactcattt  13102600              ----------->GT1             <---------TOE2(3)         <-----------TBP       <---------DAG2       <----------DOF2       <---------------AGL15       --------------->AGL15                                            --------->HSFC1(2)      <---------ANAC58                                                  <---------At4g35610      <---------ANAC58                          <---------AHL20(2)      <---------HSFC1(2)      <-----------------AGL3              <---------DAG2         <------------CBF      <-----------------AGL1      --------->HSFB2a(2)       ------------>CBF      <-----------------AG        <---------HSFB2a(2)    ------>ZmHOX2a(2)      <-----------------AGL2 <----------DOF2    --------->AHL20(2)    XXXXXXXXXXXXXXXXXXXXX>MIR402    <-----------GT1 <------------CBF      <----------DOF2<---------MYB46(3)            --------->ZAT14   gtgtttttgctttttatggaaaaattgaattcttttttagaaaactttttttaaatcgatcgttcaatattggaagcttattaaactactgttctcaatc  13102700               --------->HSFC1(2)               <---------HSFC1(2)                                         <------ZmHOX2a(2)               <---------HSFB2a(1)                                        ===========================HOX2a_HOX2a               --------->HSFB2a(1)                                       --------->ARR14(2)             <------ZmHOX2a(1)                 --------->At5g28300       <---------ARR14(2)           --------->MYB59                    ----------->GT1            <---------ARR11(3)      --------->ICU4                         <---------TOE2(3)           --------->AGP1 ----------->GT1                      <-----------------AG               --------->ARR11(3)   <------ZmHOX2a(1)   cagatgtgaatattaggaacttccatggtacaagaacattgtcgattacggtaaatttgataaacaagatagatagatccactaagttttaacttaggac  13102800                                                                      --------->ANAC46                                                                      --------->ANAC55(1)                                                                      --------->ANAC58                                                                      --------->ANAC55(2)                                                                      ----------->GT1                                   --------->LBD16                    <---------ANAC55(2)                                  --------->HSFB2a(2)                 --------->ANAC58               --------->YAB1     <---------HSFB2a(2)                <-------TEIL              <---------YAB1   <---------ARR14(2)               --------->AHL20(2)          <---------GLK1(2) --------->AHL20(2)                  <---------AHL20(2) <---------MYB52(2)       --------->ANAC58                     --------->AHL20(2) --------->ANAC58         --------->ANAC58              --------->TOE2(3) --------->ANAC58         ----------->GT1    <---------ICU4--------->AHL20(2)        ------>ZmHOX2a(1)   accacgaacacagattatcagagtaaacaagtaaatccagaagtcaagaattgccaaaacttaaattaaaatacgtaacaaaacttcctgttcgcctcat  13102900                    <---------GLK1(1)                ---------->ID1                    --------->GLK1(1)                <-----------------AGL1                 --------->LBD16                     <-----------GT1                --------->LBD16              --------->ANAC58                                     ---                <---------LBD16           --------->ZAT2                     <---------ZAT18   ------               <---------LBD16            <---------ZAT2<----------DOF2      --------->ZAT18   ------             -------->P                   <---------At4g35610       <----------DOF2            ------        <---------ARR11(3)                --------->At4g35610  <---------ANAC58                ------        --------->ARR11(3)     --------->LBD16   <----------DOF2    <---------DAG2             ======      <---------TOE2(3)       --------->LBD16--------->ANAC58  <---------ANAC58               ------>ZmHOX2a(1)   tcgacattgaggtcttacccgggtttccttccccgaggtttcccagcaggcctttttcctttctggcctgctttaccagtgcccttctgcccgttcctac  13103000               <-------MYC3               ------->MYC3              --------->TGA1a              <---------TGA1a  --------->GLK1(1)  <----------DOF2                                                              <---------ALFIN1  ======================bZIP_DOF                                              <---------ALFIN1 <---------ANAC58      <---------ATHB12                                     ------->GAMYB <---------ANAC58    ------>ZmHOX2a(1)                                 --------->DOF5.7(2) ------>LBD16 --------->O2                                            --------->TOE2(3) -->P    --------->ANAC46                                             --------->TOE1(3) >MYB46(1)  <---------ALFIN1               <---------ARR14(2)         <----------DOF2 --->MYB52(1) <---------O2                 --------->ARR14(2)       ------>MYB46(1) >MYB83------>ZmHOX2a(1)--------->YAB1    ------>ZmHOX2a(1)         ------>MYB83              ------- =======================MYC_MYB        ------>ZmHOX2a(1)          <---------MYB59    <----------DOF2   cgggctttcctcccccacgtttcctatcatcactcttcatcctcctatccactctcttctgtcccttaccaactttaaccccaactcctttcttagacac  13103100  Previous    Next  AGI:  At4g25720.1    Description:  glutamine cyclotransferase family protein. similar to Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya. (GB:2IWA); similar to glutamine cyclotransferase precursor [Carica papaya] (GB:AAC27745.1); contains InterPro domain Glutamine cyclotransferase (InterPro:IPR007788); contains InterPro domain Nitrous oxide reductase, N-terminal (InterPro:IPR011045) Range:  from: 13099827    to: 13102587    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g25730.1    Description:  FtsJ-like methyltransferase family protein. similar to FtsJ-like methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G01230.1); similar to Os05g0567400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056350.1); similar to FtsJ-like methyltransferase family protein [Musa acuminata] (GB:ABF69946.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47601.1); contains InterPro domain Ribosomal RNA methyltransferase J (InterPro:IPR015507); contains InterPro domain Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); contains InterPro domain Spb1, C-terminal; (InterPro:IPR012920) Range:  from: 13102688    to: 13106789    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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