Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             <---------bZIP60(2)                           --------->At4g35610                           <---------At4g35610                         --------->ZAT18                 <------ZmHOX2a(1)                        ----------->HVH21                =============HOX2a_HOX2a               ------>NtERF2 ----------->HVH21     --------->ANAC58              ------>NtERF2<---------O2            --------->ANAC58   <---------ARR11(3)            <---------At4g35610                  ---------->DOF2      --------->ARR11(3)            --------->SPL7 ----------->RAV1(2)--------->LBD16     ---------->DOF2            --------->At4g35610       ---------->DOF2 <-----------RAV1(2)                         ---         ----------->RAV1(2)<---------MYB59 <---------LBD16    <------ZmHOX2a(2)               <-----   gagacgactctccctgcggcccaagagtgacctgaccttgtaaagctccggtgaagccaggagagatcgaaagctcttggagacgagtgagagaatagga  13099400                       <---------ICU4                    --------->GLK1(1)                       --------->YAB1                <---------ANAC46  <---------ALFIN1                ------->MYC3                         <---------ANAC55(2)                <-------MYC3                --------->HSFB2a(2)  <---------ETT(2)                <-------MYC2                <---------HSFB2a(2)  --------->ETT(2)                ------->MYC2               <---------LBD16 <-----------RAV1(1)               <---------ANAC46         --------->ATHB12<---------ARR14(2)    <---------AHL20(2)--------->ICU4   <---------ATHB12 --------->ARR14(2)     <<<<<<<<<TBF1   --------->YAB1 --------->SPL7     ------>MYB83  --------->MYB52(1)------>NtERF2<<<<<<<<<TBF1 -------->GT1  <---------ANAC58      ------>MYB46(1) --------->ANAC55(2)------>NtERF2   <<<<<<<<<TBF1 -ZmHOX2a(1)   <---------ANAC58    <---------MYB59----------->HVH21 --------->ANAC46 <<<<<<<<<TBF1   tagtataatattgagacgcgtgcgatgatgaccaataccaaatcatcgggaagtgacggatttgttgtcgacgacaccttcttcttcttcttcttcatgt  13099500                                                                          <------ZmHOX2a(1)                                                                      <------NtERF2                                                                   --------->RAP2.3(1)                                                                   <---------At4g35610                                                                   --------->ATERF1(1)                                                                   --------->At4g35610                                                                   <------NtERF2                                                                   <---------LBD16                                                                  <---------RAP2.6(1)                                                                  <---------ORA47(2)                                                                  <---------DEAR4(2)                                                                  <---------ERF1                                                                  <---------RRTF1(1)                                                                  ------>NtERF2                                                                  <---------RAP2.3(1)                                                                  <---------ATERF1(1)                                                                 --------->DEAR3(1)                                                                 <---------ATERF1(2)                             --------->AtMYB61                   <---------DEAR3(1)                            --------->MYB46(3)                   <---------RAP2.6(2)                           ------>MYB46(1)                       <---------RAP2.3(3)                           ------>MYB83                          --------->ATERF1(2)      -----------                         <---------MYB59                         <---------RRTF1(2)     <------MYB46(1)                      ------>NtERF2                              <---------RRTF1(3)     <------MYB83                     ----------->HVH21                           <---------RAP2.3(2)    --------->ANAC55(2)                     --------->WRKY38(1)                        <---------ABI4(1)       <---------ANAC55(1)         <---------MYB52(1)-------->P                           <---------LBD16         <---------ANAC55(2)        <-------GAMYB--------->WRKY12                           --------->ATERF1(1)     <---------ANAC46    <---------bZIP60(1)  --------->AtMYB61                    ===================HOX2a_HOX2a   <-----    --------->O2     --------->WRKY45                <----------DOF2<---------ANAC46   --------->MYB59    --------->bZIP60(1) --------->MYB46(3)    <---------DAG2  ------>ZmHOX2a(2)        --------->MYB111(1)    <---------O2   <---------At4g35610        <----------DOF2 <---------DEAR3(1)    <---------GLK1(2)  ------>NtERF2    --------->At4g35610     <-----------GT1  --------->ARR14(2) ----------->RAV1(1) --------->DEAR3(1)--------->LBD16      <----------DOF2     <---------ARR14(2) --------->MYB52(1)   <   tcgacgacgtcgttgtctctccgctgaccaacctctccatttcttttacttttttctttggggatcggcggcggaaggagacaacagattaggtgttaat  13099600                                                                                            ---------                                                                                      <---------YAB1                                                                              <---------WRKY12                                                                              <---------WRKY38(1)                                                                             --------->WRKY18(1)          <---------DAG2                                                    <-----------HVH21       <-----------------AGL1                                              <------MYB46(1)  <--------  <---------MYB52(1)                                                       <------MYB83--------->YAB1 >GT1 <---------ZAT18            <-----------GT1                       <-----------RAV1(1) <--------- ----YAB1 <----------DOF2   <---------DAG2                            --------->ARR11(3)   <--------- ---------MYB46(3)          <----------DOF2    <---------ANAC46       <---------ARR11(3) <-----------GT1   attcgttgggccctttatgggccttgatcactttttaactaaaaacgttttgtgtttagtttttttgccgaagatgttggtcaagggtattatactattt  13099700                <---------ANAC58                <---------ANAC46         =========================================MYC_MYB           <---------ANAC46              --------->O2                                            *TSS      <---------YAB1                     <---------O2                                         <------ ------>AGL15   <---------ANAC58         ==================================bZIP_DOF ----------->GT1 -------AGL15   --------->ALFIN1         <---------TGA1a                            --------->YAB1 <- --------AGL2   <---------bZIP60(2)      --------->TGA1a                  ------->GAMYB   <---------- --------AGL3   <---------REM1(1)<-----------HVH21              <----------DOF2   <------------CBF<--   atgggattatgttttgtggtgtggcatttgcagagtgtcagagacgtcgtttgattttgggagagacttttgttaaccgaggggaattgtaatttccttt  13099800                                                -------->ATHB1                                                <---------ICU4                                                --------->YAB1                                 <---------GLK1(2)                       <---------TOE2(1)        <--------ATHB1                        --------->At5g28300 ------>NtERF2         <---------TOE1(1)        --------->ATHB51                     ----------->GT1 --------->LBD16      <-------TEIL              --------->ATHB12                    <---------YAB1 ----DOF2            --------->CCA1(2)         <---------ATHB12                     <---------TOE2(3) --------LBD16      <---------SPL7             --------->ICU4                    --------->ICU4 -GT1      <---------GLK1(2)   <---------YAB1--------->WOX13(1)                  <---------ATHB51 -------At5g28300 <---------TOE2(3)         ------------>ATHB5        <---------TOE2(3)     ---------   tgccgcgattttggattttcaaggtacgaggttttgattctcatcttcaatcattgaagtttgctaaatgctaatgttcagaaattatggtaaattatag  13099900                                                                                            <--------                                                                                            ---------                              --------->AHL20(1)                                           <---------ANAC58                              <---------AHL20(1)    <---------ANAC58             <---------ANAC58  <-                         --------->ZAT18       <-----------RAV1(1)               <---------ANAC46  <-                        --------->ANAC58   <---------ATHB12               <---------At4g35610     <--                        --------->ANAC58  ------>MYB46(1)          <---------At4g35610     <---------ANAC58              <---------ICU4  <---------ARR11(3)    <---------ANAC58   <----------DOF2     <---------  --------->ZAT14     ------>MYB46(1)     ------>MYB83         <-----------GT1   <---------ANAC58 ---  <---------ZAT14     ------>MYB83        --------->ANAC58 <---------AHL20(2)  <---------YAB1 ------- >YAB1       --------->MYB46(3)           --------->ANAC58--------->AHL20(2) <---------At4g35610  <--   ccagtatacattctaaccattaccaagcgcaatattttcataccaagcattgttgctcgatataatttccgctctttgctgatgcttgttttagcttgat  13100000                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                             --------       <----------DOF2                                                                       -------- -------AGL15                                                                                <------- ------>AGL15                                                                               <------NtERF2 -----MYB83                                                                                 --------- -----MYB46(1)            <---------MYB52(1)                                               <---------ATERF1(1) -------------AtSPL3     <-----------HVH21                                                 ------>NtERF2 --------AG             --------->ANAC46                                                  --------->DEAR3(1) ------>MYB59          --------->LBD16                                                    ----------- -->ATHB12   ----------->RAV1(1)         <---------ATHB12                                 <---------DEAR3(1) -------------AtSPL8  <-----------------AGL1 ------>ZmHOX2a(2)                           --------->ATERF1(1)   ttggtacagctttggccacagtttccccgttactgcaaaacaaatgatcgagacacaaaattgatggagacacaaaatgttgtgactatgaggcgacgtc  13100100   <---------ATHB12                                         <-----------HVH21 --O2 --------->ANAC58                                  <-----------GT1 --bZIP60(1)                                  <---------DEAR3(1) --bZIP60(2)                                  --------->ALFIN1 ->DEAR3(1)                                   <---------ANAC58 --TGA1a                                      <---------ANAC58 ->O2 --------->ANAC58         --------->AHL20(2)  <---------ANAC58                                 < ->TGA1a                     <---------ARR11(3)    <---------ANAC46                            ------ --ANAC46                    --------->ARR11(3) <<<<<<<<<MYB2                       --------->TOE2(3) >ATERF1(1)         --------->YAB1     ---------->DOF2<-----------HVH21       --------->YAB1   <----- >HVH21            <---------YAB1  <-----------GT1 <---------ANAC58         --------->AtLEC2---------   gagtaatcaagcctagaggggatgataacaagatttattaccaaagaggcgttgcttgtcactgtcccatgctatgccattcaaaacatcaataccctat  13100200   --------->ANAC58   --------->AtLEC2                                                    <-----------GT1   --------->ANAC58                                                <----------DOF2 <---------ANAC58   <----------ID1                                 <---------DAG2 <---------ANAC58   ----------->GT1                            <---------ZAT14          --------->ANAC58 ---------ZAT18    ----------->GT1    <---------ICU4           --------->ZAT14          --------->ANAC58 --->ZAT14       --------->MYB52(1) <---------TOE2(3)      --------->TOE2(2)      <-----------GT1 ----ZAT14   <---------TOE2(3)      XXXXXXXXXXXXXXXXXXXX>MIR867<---------ZAT18   <-----------GT1 ------>AGL15<---------TOE1(3)     ---------->DOF2         --------->TOE1(2)    <---------AHL20(2)   agtgcatgcaagattaaggtaagggaaaaaatagttttaaagatgacttattaagagacaacctgtgaacttttttccatattttaactcaccctatgtc  13100300  Previous    Next  AGI:  At4g25710.1    Description:  kelch repeat-containing F-box family protein. Identical to F-box/Kelch-repeat protein At4g25710 [Arabidopsis Thaliana] (GB:Q9SZZ9;GB:Q67YB0); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G51250.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Kelch repeat type 2 (InterPro:IPR011498); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro doma Range:  from: 13098150    to: 13099540    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g25719.1    Description:  other RNA Range:  from: 13099797    to: 13101026    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g25720.1    Description:  glutamine cyclotransferase family protein. similar to Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya. (GB:2IWA); similar to glutamine cyclotransferase precursor [Carica papaya] (GB:AAC27745.1); contains InterPro domain Glutamine cyclotransferase (InterPro:IPR007788); contains InterPro domain Nitrous oxide reductase, N-terminal (InterPro:IPR011045) Range:  from: 13099827    to: 13102587    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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