Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->MYB46(3)                      --------->MYB52(1)                      ----------->RAV1(1)                   --------->ANAC58                   --------->ANAC58                   --------->ANAC46                 ---------->DOF2              --------->YAB1                                     --------->YAB1               -------              --------->TOE1(3)                            --------->MYB52(1)                 -------        --------->TOE2(3)------->GAMYB                  --------->At4g35610                   ------- ->ANAC58     --------->TOE2(3)                    --------->HSFB2a(2)                <---------DAG2 ->ANAC58  --------->WOX13(1)                      <---------HSFB2a(2)                <----------DOF2   ttgtgcataacatcaatcttaaagcaacagtcaaaacaatagcattcaaacttgtagaagctaacaattgtagttgcaaaacattccactttattcaagg  13091400                                                <---------TOE2(3)                                               --------->MYB52(1)                                              ------->GAMYB                                     -----                                             <---------MYB46(2)                            ------->GAMYB                                             <---------MYB52(2)                           --------->MYB46(3)                                    --------->TOE2(3)                                     <---------MYB52(2)                                   --------->YAB1             <---------WRKY38(1)     <-------TEIL    ---------->DOF2           --------->WRKY18(1)          ------->GAMYB            --------->ARR14(2) -->ANAC58                  ----------->GT1  <---------MYB55(2)        --------->ZAT6--------->CCA1(2) -->ANAC46              --------->DAG2       --------->MYB46(3)   --------->YAB1    <---------ARR14(2) -->ANAC58             ---------->DOF2 --------->WOX13(1) --------->MYB46(3)  --------->CCA1(2) -----   aacataaaaagacaccaagtccaaagaaagtggtcaaacataaatcaactaacgatttcaacagtcaacaataacacaagatagaagatacaacaaacaa  13091500                                                         <------ZmHOX2a(2)                                                         --------->CCA1(2)                                                        <---------AGP1                                                        --------->AGP1                                                        <---------ARR11(3)                                                        --------->ARR14(2)                                          <---------ATHB12          --------->GLK1(1)                                        --------->WOX13(1)------>ZmHOX2a(2)                                      <---------ATHB12  --------->ARR11(3)            <---------AHL20(2)                                     --------->ANAC58   <---------ARR14(2)           --------->AHL20(2)                                     --------->ANAC58   <---------ARR14(3) <---------ICU4          <---------ICU4            --------->WOX13(1)  --------->ARR14(3) <--------HAHB4         <---------YAB1          --------->ANAC58       <-----------ARR10  --------->ATHB51 ---->ANAC58                     --------->ANAC58      <---------CCA1(2)  <---------ATHB12 ---->ANAC58                     --------->ANAC46     ----------->ARR10   --------->ICU4    ---------   gctaatgcctgatcatttcaatggatgcaaactagaagcaatcaatcgagagtgaccagatctgcctcagaaacccataattaagcattaaatctgatga  13091600                            ---------->DOF2                         <---------HSFC1(1)          <---------ARR11(3)                         --------->HSFB2a(2)         --------->ARR11(3)                         --------->HSFC1(1)          --------->GLK1(2)                         <---------HSFB2a(2)        --------->RVE1(1)           <---------HSFB2a(2)                ----------->GT1                  <------ZmHOX2a(2)     ------->TEIL   <----------DOF2          --------->YAB1              --------->MYB52(1)         - >At4g35610--------->HSFB2a(2)            --------->WOX13(1)           --------->CCA1(2)            <   acaaatgaaactgctcgaaaaacttttctcgaaagaagtcaattcaattagaaaaaatctatggaaattgaagataaacggatcaacaagatgatgaaat  13091700                                       ---------->DOF2           --------->HSFC1(1)    ----------->HVH21                                                 --           --------->HSFB2a(2) --------->ZAT2                           ---------->DOF2            <-           <---------HSFB2a(2) <---------ZAT2                  ----------->GT1                    <--  ------>ZmHOX2a(2)            ----------->RAV1(2)        <---------AHL20(2)                  <------ <------ZmHOX2a(2)             --------->At4g35610       --------->AHL20(2)                   <------ -------->ARR14(2)             <---------At4g35610       <---------AHL20(2)     ---------->DOF2<----- ---------ARR14(2)       ---------->DOF2   --------->ARR11(3)<---------------------WRI1     ------->TEIL   tggatccaaacctctagaaaatggcatagaagcagctgactcaaagaactactctaaaatttaatcggataatacaaagagagaaagagaaacgtagctt  13091800                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              <------       *TSS                                                                                   -------      --------->LBD16                                                                        <-------      *TSS                                                                                   <-------     <---------HSFB2a(2)                                                                     --------     --------->HSFB2a(2)                                                                     --------    ------>ZmHOX2a(2)                                                                        <-------   <------ZmHOX2a(2)                                          <---------ANAC46               --------  <---------ARR14(2)                                          <---------ANAC58          --------->ANAC58  --------->ARR14(2)                                          <---------ANAC58          --------->ANAC46 ------->HSFB2a(2)                                       <---------At4g35610     --------->YAB1 --------HSFB2a(2)                                       --------->At4g35610    <---------ATHB12 ---- -------LBD16                                  --------->ANAC46               --------->WOX13(1)----- ---ANAC58                                     --------->ANAC58             ------------>CBF -------- ---ANAC58                                     --------->ANAC58      <---------ANAC46   --------->ANAC58 -----DOF2                          <-------TEIL     --------->TOE1(2)   <---------CCA1(2)   <-------   tctggatccagaagactctatagagacagaacatgacatacagtagttcaagaaacgtaggctgacttgttgtttgtatccaatcaaaacaagccacgtg  13091900 -MYC2 >MYC2 -PIF5 >MYC4 >MYC3 -MYC3                                                                                      --------- -MYC4                                                                          <---------ANAC58 >PIF5                                          <---------CCA1(2)               <---------ANAC58 --ANAC46                                   <---------ANAC46                  <-----------ARR10 --PIF3(3)                           <----------DOF2                          <---------ARR11(1) ->bZIP60(2)                     --------------->AGL15                        --------->ARR11(3) ->O2                           ----------------->AGL1  --------->ZAT14       <---------ARR11(3) --TGA1a                        <-----------------AGL1  <---------ZAT18       --------->ARR14(2) ->PIF3(3)            <---------ANAC58      --------->TGA1a                   <---------ARR14(2) ----->At5g28300    <-----------GT1  =================bZIP_DOF               <---------ARR14(1) ------>GT1--------->ANAC58     <-----------------AG    <---------ZAT14      <---------CCA1(2) ->TGA1a   --------->ANAC58     <-----------------AGL3--------->ANAC46     --------->YAB1  --------->At4g35610 --O2<---------ANAC46 <---------ANAC58      <---------TGA1a           --------->ABI4(2) <---------MYB52(1)   gtaaatgacttagaagcaaattttacttgcagtttccttctttgggacgtctatctactacacttggaccggtgcaaccatatcttgtccattagcttaa  13092000                                                               ------->MYC3                                                               <-------MYC3                                                              --------->ANAC46                                                              <---------ANAC55(2)                                                              --------->ANAC55(2)                   --------->TOE2(3)                          <---------O2               <---------YAB1                                 --------->O2             <---------ICU4                                   --------->TGA1a             --------->YAB1                                   <---------TGA1a             -------->ATHB1                                 <-------------DYT1            --------->ICU4                              ------->TEIL                        <--------            <---------AHL20(2)                       <---------ANAC55(2)             ----------->GT1            <---------YAB1                           --------->ANAC55(2)  <------MYB83     <---------AHL20(1)            --------->AHL20(2)--------->ZAT6      <------ZmHOX2a(2)       ----------->GT1  --------->AHL20(2) --------->At4g35610        <-----------GT1      --------->ARR11(3)       <------MYB46(1)  <---------AHL20(2) <---------At4g35610     --------->AHL20(2)--------->CCA1(2)<-----------GT1     <---------AHL20(2) >TOE2(3)   --------->AHL20(1)<-----------GT1    <---------ARR11(3)      <---------AtMYB61--------->ICU4   ttcagctatctaaaattattatctcaattttttcactattcaaatatacaagatcatgtatttcacgtgattcggatggttttaaatttgtaattttttt  13092100                                                          --------->ARR11(3)                                                          <---------ARR11(3)                                                        <---------TOE2(3)                         ---                                                   --------->AHL20(2)                          ------                                                   <--------ATHB1                          <---------                         <----------DOF2           --------->ATHB51                        <---------DAG2                         <---------DAG2            <---------AHL20(2)                  <-------------            --------->ARR11(3)                     <---------ICU4                     ------>MYB46(1)            <---------AHL20(2)                    --------->ICU4                      -------->P  <--            --------->AHL20(1)                    <---------ATHB12                   ------>ZmHOX2a(1)     ----------->GT1  <-----------GT1             <---------ATHB51              <---------CCA1(2)<--- -AHL20(2)  <---------AHL20(1) ---------->DOF2  --------->YAB1          ---------->ID1------>MYB83---   tgagcatttgttaatattttgaagtaacttttttaaagaaaaaatcaaactaataatttagattttagaccctcgtcgtcttatatcctacccctttatg  13092200             <---------AHL20(2)             <---------AHL20(1)             --------->AHL20(2)                                                                    --         <---------AHL20(2)                                                                       <--         --------->AHL20(2)                                                                       <--         --------->ICU4                                                                           ---        <---------AHL20(1)                                                                        ---     --------->AHL20(2)                                                                    --------->LBD16 ----------->GT1                         <---------ANAC46       <---------AHL20(2)        --------->ANAC58 ---->TEIL<---------ICU4               --------->MYB52(1)  ----------->GT1                --------->ANAC58 --->ANAC55(2)                       <XXXXXXXXXXXXXXXXXXXXMIR4240                       ------------- -DOF2 --------->YAB1             --------->YAB1          --------->ANAC58           ----------->HVH21 ----AGL1<---------ATHB51     --------->AHL20(2)          --------->ANAC58   --------->GLK1(1)    --- -------ARR14(2)   <-----------GT1--------->AHL20(2)      ----------->GT1--------->ANAC58 --------->ANAC46 ------CCA1(2)<---------AHL20(2)  <---------AHL20(2)    --------->MYB52(1)   <---------GLK1(1)  ----- ------>ARR14(2) <---------ICU4--------->YAB1     --------->WRKY18(1)    --------->ANAC58------------   tatctgttaaaataattaatttttccaaacaaataataatataacgggtatggtcatggaacggaaaaaattgggacggaaatgtgtatgacccgaaata  13092300  Previous    Next  AGI:  At4g25690.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G25670.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66701.1) Range:  from: 13090218    to: 13091807    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g25692.1    Description:  CPuORF13 (Conserved peptide upstream open reading frame 13). similar to CPuORF12 (Conserved peptide upstream open reading frame 12) [Arabidopsis thaliana] (TAIR:AT4G25672.1); similar to unknown [Populus trichocarpa] (GB:ABK93907.1) Range:  from: 13090218    to: 13091806    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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