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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                      <------NtERF2
                                                                     <---------At4g35610
                                                                     --------->At4g35610
                                                                     --------->LBD16
                                                                     ------>NtERF2
                                                                    ----------->RAV1(1)
                                                                    <---------ANAC46
                                                                  --------->At4g35610
                                                                 <-----------RAV1(1)
                                                                ------>ZmHOX2a(2)
                                                               --------->CCA1(2)
                                                               <------ZmHOX2a(2)
        <---------At4g35610                                   <-----------ARR10
        --------->At4g35610                                   --------->ARR14(3)
    --------->TOE2(3)                                         --------->ARR14(2)
--GLK1(1)                                                     <---------ARR14(3)
->GLK1(1)                                                     <---------ARR14(2)
>ARR11(3)                          --------->CCA1(2)          --------->ARR11(3)                   -
-ARR11(3)                --------->ZAT6                       <---------AGP1                       -
---ARR10<---------ZAT2  <---------TOE2(3)                     --------->AGP1                    <---
-ARR14(2)             <---------ICU4                          <---------ARR11(3)        <------ZmHOX2a(2)
-AGP1------>ZmHOX2a(1)--------->YAB1                         <---------CCA1(2)        <---------At4g35610
>ARR14(2)     <-----------GT1--------->MYB52(1)             ----------->ARR10         --------->At4g35610
 
tcttaatcctcagctaataactcaattaagactaatggatacaaattacacaaatacagacaccagatctgccgcagaaactaattttcagatcaaaatt  13086700
                                                                                     <------ZmHOX2a(1)
                                                                                  --------->LBD16
                                                                                  <---------LBD16
                                                                                 <---------TOE1(1)
                                                                                 <---------TOE2(1)
                                                             <-------TEIL       ------>ZmHOX2a(2)
                                                             <-----------------------TaNAC69(2)
                                                            <------ZmHOX2a(2)  --------->CCA1(2)
                                                            --------->CCA1(2)  <------ZmHOX2a(2)
                                                            ================================HOX2a_HOX2a
                                                           <---------ARR11(3)  --------->ARR14(1)
                                                           <---------ARR14(2)  =============HOX2a_HOX2a
                                                           --------->ARR11(3) --------->AGP1  ------
                                                           --------->ARR14(2) <---------ARR14(2)
                                                   <------MYB46(1)            --------->ARR14(2)
                                                   <------MYB83               <---------ARR11(3)
-------->TOE1(3)                            <---------MYB52(1)                --------->ARR11(3) ---
-------->TOE2(3)                     <---------AHL20(2)    --------->AGP1   ----------->ARR10<------
--------GT1                  --------->MYB52(1)   --------->MYB59       --------->YAB1  <---------At4g35610
 
aacctcaattcaacaagaacaataagagaaacaatcggatttaatccattatgtaggtctaagatccatgaataagcataagatccgaggaagctaatca  13086800
                                    --------->CCA1(2)
                        <---------AHL20(1)
                        --------->AHL20(1)
        <---------TOE1(3)          --------->ARR11(3)
       <-----------GT1  <---------AHL20(2)                           --------->YAB1
   <----------DOF2     --------->YAB1---------->DOF2              ---------->DOF2
--->YAB1<---------TOE2(3)      ---------->DOF2            ----------->GT1              --------->AGP1
------->DOF2           --------->AHL20(2)              --------->MYB52(1) --------->ICU4           <
---ATHB12           --------->WOX13(1)--------->DAG2 --------->CCA1(2)    <---------YAB1<------ZmHOX2a(2)
 
aaaagacttttaacgaaataagtcaattatattgaaaagataaagggaaattgaagataaacggagaaacaaagatgatgatgaaatttagatccaaacc  13086900
                                            <---------AHL20(2)
                                            --------->AHL20(2)
                               <---------ARR11(3)
                               --------->ARR11(3)
                     ------>NtERF2      --------->AHL20(2)
                  <---------ZAT2<---------GLK1(1)
                  --------->ZAT2--------->GLK1(1)----------->GT1
                  --------->At4g35610  --------->AHL20(2)                            --------->DAG2
                  <---------At4g35610<----------DOF2                     ---------->DOF2
------NtERF2---------->DOF2---------->DOF2 --------->AHL20(2) ----------->GT1       ---------->DOF2
 
tcggcaatatggcatagaagcagctgccttcaaagaactcctttaaattaatcggataatacagagagataaacaaaaacgcagaagtaaagttgctgtt  13087000
                                                                                               -----
                                            --------->At4g35610                                <----
                                           ------------------------>ANAC81           <---------ICU4
                              ----------->GT1                                        --------->YAB1
                          <---------HSFB2a(2)                           <---------YAB1     <--------
                   <------ZmHOX2a(1)---------->DOF2                   <------ZmHOX2a(1)<---------YAB1
         ---------->DOF2  --------->HSFB2a(2)                        ----------->GT1--------->ICU4
 
ttgatgcagagagaaagagagaggaatttcgagagataaaaaagaagagcagacgaagaagacgagagagagaggataatagaaggaattataactagta  13087100
                                         <-----------HVH21
                                        --------->ALFIN1
                                       ------->MYC3
                                       <-------MYC3
                                       ------->MYC4
                                       <-------MYC2
                                       <-------MYC4
                                       ------->MYC2
                                       -------->ABF1
                                      --------->TGA1a
                                      <---------TGA1a
                                      --------->ANAC55(2)
        --------->ANAC58              ===============================bZIP_DOF
        --------->ANAC46              <---------ANAC55(2)
        --------->ANAC58              <---------O2
 ---------->DOF2                      <--------ABF1
 ===============================================bZIP_DOF
---->ZAT14                            --------->O2        <----------DOF2         <------------CBF
-----ZAT14  <------NtERF2            ------------>OsbHLH66<---------DAG2       ------------>CBF   <-
-------AtSPL8                     ----------------->PIF3(1)           <---------ZAT6      <---------
 
cagagaaagaaacgcagcgcgacttctaatgaaatggggacacgtgtcgaatgatgtctgacttttttttcaagtgtaagttttcaattgggactttgga  13087200
                                                                          --------->LBD16
                                                                         --------->LBD16
                                                                        <---------LBD16
                                                                      ------>ZmHOX2a(2)
                                                                     <------ZmHOX2a(2)
                                                                    <---------ARR11(3)
                                                                    <---------ARR14(2)
                                                                    --------->ARR11(3)
        --------->ABI4(2)                                           --------->ARR14(2)
       --------->ALFIN1                   --------->ICU4          ----------->ARR10
      ------->PIF5                        ===================================HOX2a_HOX2a
      <-------PIF5                        ==================================HOX2a_HOX2a
     <---------DEAR4(2)                   ------>ZmHOX2a(1)     <---------MYB52(1)                --
    <---------MYB46(3)                --------->TCP15(1)       <---------RAP2.6(3)              <---
    <---------DEAR3(1)                <---------PCF2           <-----------HVH21            --------
   <---------ORA47(1)               <---------MYB46(3)        <---------MYB46(3)            <-------
--------O2                       <---------ANAC46        --------->At4g35610              --------->ARR11(3)
-DOF2<---------DEAR3(2)          <-----------RAV1(1)     <---------At4g35610              <---------ARR11(3)
 
gacttggccggtgcgacttcgtctactcccagtattttgtgggtcctaatgagggctattagcagccgttagatcccccgataactgttttgagatgttt  13087300
       <---------DAG2        <---------ARR14(2)
       <----------DOF2       --------->ARR14(2)
--------->ARR14(2)         --------->LBD16
<---------ARR14(2)       <---------LBD16
------->LBD16           --------->MYB52(1)                  ----------->GT1
------LBD16        --------->ETT(2)            --------->YAB1                     <---------ARR14(2)
->HSFC1(2)         <---------ETT(2)        --------->ICU4 ---------->DOF2         --------->ARR14(2)
--HSFC1(2)        ---------->ID1    <----------DOF2 <---------ANAC55(2)   <----------DOF2     <-----
 
ccggttccaacttttttttttgtcgacttccggttccaactttgcaatatttatcatgtaagaaagaaaatttgagcctttcacgaatatgtacaagtgt  13087400
                 --------->AHL20(2)
                 <---------AHL20(2)
                 --------->AHL20(1)
    --------->TOE2(3)
    <---------MYB59
    --------->TOE1(3)      --------->ARR11(3)
 <-----------GT1 <---------AHL20(1)                                          <----------DOF2
------HVH21  <---------YAB1<---------ARR11(3)                     <----------DOF2                 <-
 
catgttaccttacattacaataaaatataagagcttaatttgcattcaaagtttatcaacttgactaagctttgtttgtgctttgagcatcccattcaag  13087500
                                                                                --------->LBD16
                                                                                ------>ZmHOX2a(1)
                                                                              <---------LBD16
                                                                              ======================
                                                                         <---------AHL20(2)
                                                                        --------->AHL20(2)
                                                                        <---------AHL20(2)
                                                                        <---------AHL20(1)
                                                                        --------->AHL20(1)
      --------->AtMYB61                                             ------>ZmHOX2a(1)      <--------
  --------->MYB46(3)        <----------DOF2                        <---------MYB59        XXXXXXXXXX
------TEIL       <----------DOF2                            <----------DOF2   ----------->RAV1(2)
 
attcatccaccaaaatgagactttgaatacacttttgatataacaaaaaacttggtcgaatttctttggtcctaatttatttcctgaatcccatctgttg  13087600
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AGI:  At4g25670.1   
Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G25690.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G25690.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66701.1)
Range:  from: 13085227    to: 13087099    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g25672.1   
Description:  CPuORF12 (Conserved peptide upstream open reading frame 12). similar to CPuORF14 (Conserved peptide upstream open reading frame 14) [Arabidopsis thaliana] (TAIR:AT5G52552.1); similar to unknown [Populus trichocarpa] (GB:ABK93907.1)
Range:  from: 13085227    to: 13087099    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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