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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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     <---------ANAC46                               <----------DOF2
    <---------At4g35610                            <---------ANAC58                    <---------TOE2(3)
 --------->At4g35610                               <---------ANAC58     --------->ARR14(2)        <-
 <---------At4g35610     --------->ANAC46    <---------ARR14(2)         <---------ARR14(2)     -----
<-----------RAV1(1)     --------->ZAT14      --------->ARR11(3)         --------->GLK1(2)      -----
---->At4g35610      --------->ANAC46         <---------GLK1(2)         <---------GLK1(2)       -----
-----At4g35610    <-----------GT1       --------->TOE2(3)         <----------DOF2      <---------TOE1(3)
 
ctactgctgcttagaagttttctactctacgctcttcccagtacctcagattttgctttgtctcggtctctttagaatctgtatggttttagggtttatc  13076300
                 <---------ICU4
                 <--------HAHB4                                                                -----
                 --------->YAB1                                                               <-----
--------AHL20(2)<---------ATHB12                            <----------DOF2                  <------
---->TOE2(3)    <---------YAB1                <---------ANAC58                               -------
---->YAB1<----------DOF2 ------->TEIL         <---------ANAC58                               -------
---->TOE1(3)    --------->ICU4           <---------O2       <---------DAG2                  --------
 
ttaaattttgagctttgtaatcattttgaaccctggttatgttcacttggcttccagcgctaactttttcgacaagtttttgatatatggaacaattata  13076400
                                                                   --------->ANAC58
                                                                   --------->ANAC58
                                                                ------>NtERF2
                                                                --------->LBD16
                                                                <------NtERF2--------->ANAC58
                                          --------->TOE2(1)    --------->RAP2.3(2)
<---------GLK1(2)               --------->YAB1                 --------->RAP2.3(3)
---->YAB1                       <---------ICU4                 --------->DEAR3(1)
----YAB1<---------ETT(2)   <---------AHL20(2)                 <---------LBD16--------->ANAC58
---AHL20(2)       <-------TEIL <---------AHL20(2)             --------->RAP2.3(1)
-->AHL20(1)      <--------P--------->AHL20(2)        ----------->GT1  --------->GLK1(2)  ===========
-->AHL20(2)   <---------TOE2(3)<---------ATHB51--------->AtLEC2--------->RRTF1(2)        ---------->DOF2
->YAB1  --------->ETT(2) <----------DOF2  --------->TOE1(1) --------->ANAC46 --------->ANAC46
 
atagaattttgtcgactgaggttgatttctttaaataatgacacctcgtaatgcaaatgtaaaacgccgcaagaatttgcacacaaacaaaacaaagttt  13076500
                                                                                                   -
                                                                                                   <
                                                                                                  <x
                                                                                                  --
                                                                                                 ---
                                                                                           <xxxxxxxx
                                                           --------->GLK1(2)              <---------ANAC58
                                                          --------->ARR14(2)              <---------ANAC58
        ----------------->AGL1                       --------->ANAC46                     <---------ANAC46
    <-------MYC3                    --------->AHL20(2)    <---------ARR14(2)              <xxxxxxxxx
    ------->MYC3            --------->ANAC58         --------->ANAC58                  --------->ALFIN1
   <---------TGA1a          --------->ANAC58    --------->At4g35610                  <---------TGA1a
   --------->TGA1a     --------->ANAC58       --------->DAG2                       <xxxxxxxxxxxxxxxxsmallRNA(i)
   --------->O2        --------->ANAC46      ---------->DOF2  ----------->GT1     <xxxxxxxxxxxxxxxxsmallRNA(i)
   <---------O2  <------ZmHOX2a(1)----------->GT1    --------->ANAC58          <-----------HVH21 <xx
=============bZIP_DOF  --------->ANAC58      ==================================================bZIP_DOF
 
gaagacacgttgcatttttaggacacaagccaaggaaatgtaaatacaaaaagctcacgcagaaactgtaacaaaaaactaatgtcagaagtggggtttg  13076600
                                                 <xxxxxxxxxxxxxxxxsmallRNA(fl3)
                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)
                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)
                                                 <xxxxxxxxxxxxxxxxsmallRNA(si3)
                                                <xxxxxxxxxxxxxxxxsmallRNA(s)
                                                <xxxxxxxxxxxxxxxxxsmallRNA(se3)
                                                <xxxxxxxxxxxxxxxxxsmallRNA(si3)
                                               <xxxxxxxxxxxxxxxxsmallRNA(s)
                                               <xxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                               <xxxxxxxxxxxxxxxxxxsmallRNA(si3)
   ------>NtERF2                              <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)
  --------->ANAC46                            <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)
  --------->ANAC58                           --------->AtMYB61
  --------->ANAC58                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
  <---------ALFIN1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
<xxxxxxxxxxxxxxxxsmallRNA(s)                <---------ZAT18       <----------DOF2
<xxxxxxxxxxxxxxxxsmallRNA(i)         <------NtERF2        ------>ZmHOX2a(1)
<---------ALFIN1      <---------ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      ----------->RAV1(1)
-------->TOE1(2)      --------->ARR14(2)   <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------YAB1
xxxxxxxxxxxxxxxxsmallRNA(s)          <xxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------ARR11(3)
xxxxxxxxxxxxxxsmallRNA(le3)          <xxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------AHL20(2)
------->DEAR3(2)    <xxxxxxxxxxxxxxxxsmallRNA(fl3)      <---------ICU4 <---------AHL20(2)
---->TEIL       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)------>NtERF2 *TSS  --------->AHL20(2)<----------
xxxxxxxxxxxxxxxxxxsmallRNA(se3)     ------>NtERF2<xxxxxxxxxxxxxxxxsmallRNA(le3)<------------CBF
xxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(s)--------->ATHB12
xxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------ATERF1(1)    ----------->RAV1(2) --------->ARR11(3)     <
 
aacccacgccctcttacgaagaccagaacttgagtctggcgccttagaccactcggccatcctgaccttctttattaaatatcattgacaacatatatag  13076700
                                         <---------AHL20(2)
                                         --------->AHL20(1)                                   <-----
                                         --------->AHL20(2)                                   <-----
                                --------->At4g35610                                           <-----
                               --------->GLK1(2)                                              <-----
                            --------->ANAC58                                             -----------
                            --------->ANAC58                                            --------->DAG2
                     --------->KAN4(2)   <---------AHL20(1)        <-------TEIL        ---------->DOF2
 ----------->GT1  <---------ANAC58      --------->AHL20(2) <---------AHL20(2)        <------ZmHOX2a(1)
-TBP              <---------ANAC58<---------HSFB2a(2)     --------->AHL20(2)   <---------ANAC55(2)
------ZmHOX2a(1)  <---------ANAC46--------->HSFB2a(2)     <---------AHL20(2)   --------->ANAC55(2)
 
caggatgaaaaaactagaatggcttattctcaagcatctggaattttatttgggttacaaatttttttgatacatttgggttacatgaggaaaagtaact  13076800
                                                                                               <----
                                                                                               -----
                              --------->ANAC58                                                 -----
                              --------->ANAC55(2)                                           <------MYB83
  --------->YAB1              <---------ANAC55(2)                          --------------->AGL15
-------MYB.PH3(2)     --------->HSFB2a(2)                                  <---------------AGL15
----MYB111(1)         <---------HSFB2a(2)  --------->MYB52(1)       >>>>>>>>>RAP2.2         <-------
----MYB46(2)       <----------DOF2      --------->YAB1              --------->TOE2(3)       <------MYB46(1)
----MYB52(2)    ---------->ID1--------->ANAC58                ------>ZmHOX2a(1)             <-------
>GT1           <-----------GT1----------->GT1           <XXXXXXXXXXXXXXXXXXXXMIR159B       <--------
 
aacatttgtaatgcaatttttccttttggaagtaagtaacaaaacataactgatggaacagtttcctacaatctaaaactctaaatagaacaatttggtg  13076900
                                                                     <---------ARR11(3)
                                                                     <---------ARR14(2)
                                                                    <---------CCA1(2)
                                                                    --------->GLK1(1)
                                                                    <---------GLK1(1)
                                                                --------->ANAC58
                                                                --------->ANAC58
                                                            --------->ANAC55(1)
      <---------ATHB12                                      --------->ANAC55(2)
  --------->MYB46(3)                                        --------->ANAC58
-----ZAT18                                                  --------->ANAC46
->NtERF2                                                    <---------ANAC55(2)
---->ZAT18           --------->DAG2                         --------->ANAC58
--ANAC58            ---------->DOF2--------->TOE1(3)     <---------ATHB12        <---------ANAC58
--ANAC58---------->DOF2            --------->TOE2(3)--------->TOE2(3)--------->ARR14(2)     <-------
---RAV1(1)<----------ID1          --------->At4g35610  --------->WOX13(1)        <---------ANAC58  <
 
cccaaaccaatgaaagacaaacaaaaagtcactactaagcttaacaaaaaaaaaacatcaatcacgcaagtatatccttggatgtcgtctcactccctcc  13077000
                                                                          ----------->GT1          <
                            ----------->RAV1(2)              --------->ANAC58                      <
                        ------>ZmHOX2a(1)                    --------->ANAC58                  <----
                        ===============================HOX2a_HOX2a     --------->DAG2          -----
--ALFIN1<---------TOE1(2) <---------ALFIN1                   --------->ANAC46      --------->MYB46(3)
---------CCA1(2)       --------->ANAC46         <------ZmHOX2a(2)     ---------->DOF2  --------->YAB1
 
ccatttcttcatacgttccatcgtctcctccacctgttcatcacagttgagatcgattcaattcaaggaatgaaaaagtgtatataacaaacatggtgtt  13077100
                                                   --------->At5g28300            --------->YAB1
                                                  ----------->GT1                <---------YAB1
       --------------->AtSPL8                    --------->ZAT6                  <---------ATHB12
--------->ARR14(2)                             ----------->RAV1(1)          --------->LBD16
--------->ARR11(3)                            --------->YAB1                ------>NtERF2
<---------ARR14(2)                           <---------ATHB12             <---------LBD16
---------CCA1(2)                            --------->ANAC58           <-----------HVH21
---------GLK1(1)                           --------->WOX13(1)          <---------SPL7        -------
-----ANAC46     <----------DOF2      --------->ANAC46                 <----------DOF2  --------->HSFB2a(2)
------>GT1<-----------GT1     ---------->ID1--------->ANAC58          ----------->HVH21<---------HSFB2a(2)
 
gtatatctggttcttacctctttattccagtttgtcttatacagaacaatcaacagtaacaacgtttgaagcgctgtcccggctatcattccagaccaaa  13077200
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AGI:  At4g25630.1   
Description:  FIB2 (FIBRILLARIN 2). Identical to rRNA 2'-O-methyltransferase fibrillarin 2 (FIB2) [Arabidopsis Thaliana] (GB:Q94AH9;GB:Q9SZZ1); similar to FIB1 (FIBRILLARIN 1) [Arabidopsis thaliana] (TAIR:AT5G52470.1); similar to tobacco fibrillarin homolog [Nicotiana tabacum] (GB:BAE91898.1); contains InterPro domain Fibrillarin; (InterPro:IPR000692)
Range:  from: 13074142    to: 13076438    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At4g25635.1   
Description:  pre-tRNA. tRNA-Leu (anticodon: CAA)
Range:  from: 13076583    to: 13076666    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g25640.1   
Description:  MATE efflux family protein. similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT4G00350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49464.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49462.1); similar to putative anthocyanin permease [Lycopersicon esculentum] (GB:AAQ55183.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528)
Range:  from: 13076724    to: 13079061    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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