Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->ALFIN1                                                       --------->DEAR3(1)                                                       <---------ANAC46                                                      --------->ATERF1(1)                                                      <------NtERF2                                                     <---------RAP2.3(1)                                                     <---------ATERF1(1)                                                     <---------DEAR4(2)                                                     <---------ERF1                                                     ------>NtERF2                                                    <---------RAP2.3(3)                                                    --------->DEAR3(1)                                                    <---------RAP2.3(2)                                                    --------->ATERF1(2)                                                    <---------ATERF1(2)                                                    <---------DEAR3(1)                                                    <---------ANAC46                                                   ------>NtERF2                                                   --------->RAP2.3(1)                                                   --------->ATERF1(1)                                                   <------NtERF2                                                  <---------RAP2.3(1)                                                  <---------ATERF1(1)                                                 <---------DEAR3(1)                                                <---------LBD16                                               <---------bZIP60(2)                                               --------->O2                                               <---------TGA1a                                               <---------ANAC46          --------->At4g35610                                               <---------O2     --------->ETT(1)                                            ----------->HVH21   <---------DEAR3(1)                                            ----------->TGA1 <---------MYB46(3)                    <-                      <------ZmHOX2a(1)    <-----------HVH21--------->ALFIN1                      <<<              <---------ANAC46            <---------ANAC58  <---------AtMYB61 <---------YAB1      ---            <---------YAB1                <---------ANAC58<---------ZAT2 <---------HSFC1(2)      ---- --->ZmHOX2a(2) <---------ZAT6      <---------DAG2<---------DEAR4(2)     --------->HSFC1(2)      <--- ---->ARR14(2)<---------ANAC58      <----------DOF2<---------ABI4(1)    --------->GLK1(2)       <---- -----ARR14(2)<---------ANAC58      =====================bZIP_DOF <------NtERF2         <------ZmHOX2a(1)   tcgggtactgggttttgagtgtgaggagaaagtttaggctttttgggtgacgcggcggcgaggtggtcggagagaagcttacgcttggaaggagagaagg  13048000                         --------->ALFIN1           <---------ARR11(3)           --------->ARR11(3)           <---------ARR14(2)          <---------GLK1(1)          <---------CCA1(2)          <---------RVE1(1)          --------->GLK1(1)         ----------->ARR10                            <---------ANAC58         --------->ARR14(2)                           --------->MYB52(2)         <---------ARR14(2)     --------->ATHB12      <---------ANAC46        <------NtERF2<---------ABI4(1)        <---------ARR14(2)       --------->LBD16  <------NtERF2         --------->ARR14(2)      <---------ANAC58<---------DEAR3(1)    --------->LBD16      <---------ANAC58<---------DREB2C(2) ----------------->AGL1      <---------ANAC46<---------ANAC46    <-----------------AGL1     <---------LBD16 <------NtERF2        <---------LBD16   --------->ALFIN1  --------->ATERF1(1)  <-----------------AG ------TEIL--------->ARR14(2)  <---------YAB1 <---------GLK1(2)   --------->ARR14(2) <<<<<<<<<<<<<<LFY  ------>NtERF2--------->ARR11(1)   <---------ANAC58 ------>CCA1(2)    --------->ALFIN1      --------->MYB52(1)    <------NtERF2 ----->ARR14(2)    ----------->HVH21     -------->P  <-------TEIL <---------ARR14(2)               -- ------ARR14(2)    <---------DEAR3(1) <---------At4g35610     <---------LBD16          --------->CCA1(2) --ZmHOX2a(1)   <---------DEAR3(1)    --------->At4g35610    <---------ANAC46       ----------->ARR10   atacagtggcggatatcttcggtggcggtgttgatgattcggctaccggattcggttcgtgagtcggggatttgggtttgggagcgaagaaacgagaaat  13048100                           <----------DOF2                           <---------DAG2                          <---------ANAC58                          <---------ANAC58                     <---------ICU4                    <---------YAB1                                      <---------ANAC58            <---------ANAC58                                            <---------ANAC58            <---------ANAC58     --------->YAB1                         <---------MYB46(3)       <----------DOF2 <---------WOX13(1)                         <---------ANAC58           <-------  --------->At4g35610--------->ATHB51                             <---------ANAC46          <-------GAMYB  <---------At4g35610--------->ATHB12                             <---------ANAC58          <--------  <---------ZAT2    --------->ICU4                               --------->ALFIN1           <-------- <-----------RAV1(1)<---------ATHB51                           <------MYB83        <---------ANAC58 --------->RAV1(2)  <---------ATHB12       ------>ZmHOX2a(1)   <------MYB46(1)     <---------ANAC58   cgtctgctgcttttgcttgcccataattgctttattcgtaatctcctccgtttaagagaaatggaaggtcgtggtcgtggctatggcgaacttgggttgc  13048200                 <---------TOE2(3)                                                                 <-                 <---------TOE2(2)                                                        --------->ICU4       --------->ZAT18                                                     <---------DEAR3(2)      --       <---------ZAT18                                                  --------->MYB52(1)<---------YAB1     <---------LBD16     --------->WOX13(1)                   ----------->TGA1         <---------MYB52(1)    <---------ANAC58   ------------>CBF            <---------ZAT14  --------->ANAC58  --------->At5g28300 -P <---------ANAC58  *TSS                         --------->ZAT14  --------->ANAC58 <---------MYB46(3) -ANAC58         <---------TOE1(2)           <-----------HVH21----------->HVH21      ----------->GT1 -ANAC58   <----------DOF2            --------->WOX13(1)  ---------->DOF2  <---------MYB46(3)    <---   caattttcgcgcgctttcttaggttgccaatctctctaatccatcactgtcactgaacaacaaagtgacgaagccatcggttcggagcggttattatggg  13048300                                                                            <------MYB83                                                                            <------MYB46(1)                                                                           <---------MYB46(3)                                                                           <---------AtMYB61                                                                           --------->MYB111(2)                                                                           --------->MYB111(1)                                                                           --------->ALFIN1                                                                    <---------HSFB2a(2)                                                              <---------ZAT18          <---------AHL20(2)        ----------->TBP                                       --------->ZAT14         *TSS        <---------YAB1     <---------AHL20(2)                 <---------ZAT14  <---------MYB46(3)    <----------DOF2        --------->AHL20(2)                 --------->ZAT18 <---------AtMYB61 -----NtERF2       <---------MYB52(1)              --------->YAB1   --------->HSFB2a(2)--------->AHL20(2) ------->LBD16    <---------RAP2.6(3)  --------->DAG2         <---------ARR14(2) <---------bZIP60(1) ------LBD16      ----------->GT1     ---------->DOF2         --------->ARR14(2) --------->bZIP60(1)   ccgggtctttataaatgggccggtattttttaaatgggcctaaagtgccactataacaaatgagtatactctagaagttggtggtgtcattaattctccg  13048400                                   --------->DEAR3(1)                                  --------->MYB46(3)                                 ------>NtERF2                                <---------ALFIN1                             --------->PCF2                             <---------TCP20                           <---------SPL7                         --------->SPL7                       ------>NtERF2<---------At4g35610                       <-----------HVH21                       <---------SPL7<----------CDC5                       <---------RAP2.6(3)                      <---------ANAC58                  <---------MYB52(1)--------->At4g35610                          <---------GLK1(1)                 <-------GAMYB --------->MYB46(3)                               <---------ARR11(3)                --------->ANAC46--------->ANAC46                                --------->ARR11(3)    ------>ZmHOX2a(2) <---------ANAC58    <---------ZAT6             --------->ANAC46   <------ZmHOX2a(2)  <---------ATERF1(2)<---------WOX13(1)        --------->ANAC46  <---------ARR11(3) --------------->AtSPL3  <---------WOX13(1)    <---------ALFIN1 <-----------GT1   tcgagatcgcttctctccccgttgccgtccgtccccaccgctgagtgatagatcgaaacagagaaacacacacggcgaagaagatttcaccatattttgt  13048500                                                    --------->ARR14(2)                                                    --------->MYB52(1)                                                    ------->TEIL                                                    <---------ARR14(2)                                                 --------->ANAC58                                                 --------->ANAC55(2)                                                 <---------ANAC55(2)                                                 --------->ANAC46                                                 --------->ANAC55(1)                   --------->ANAC58                                                 --------->ANAC58                      --------->ANAC58                                                --------------->AtSPL8            <---------TOE2(3)                                                --------------->AtSPL3           --------->MYB52(1)                                         ----------->GT1                       <---------MYB52(2)          <-------GAMYB                  <---------MYB46(3)           <---------At4g35610      --------->GLK1(2)               <---------ZAT2-------->P        --------->At4g35610         ---     <---------GLK1(2)                <---------At4g35610             <---------ZAT2<------ZmHOX2a(1)     --------->ARR14(2)             <-----------RAV1(2)--------->ANAC46<---------GLK1(2)    ---------     <---------ARR14(2)--------->CCA1(2)--------->ALFIN1  <----------DOF2<---------LBD16    <--------   ctaagtggattctgttgagagagagagatggctatgtctcaggtggtgaacacgtacccgctttcgaactacagcttcggaactaaggaacccaagctgg  13048600                      --------->ZAT2                  --------->MYB52(1)                 ------>NtERF2                 <---------SPL7                 --------->ORA47(1)                --------->DEAR3(1)                ----------->HVH21               --------->DEAR3(2)               --------->RAP2.3(1)               <------NtERF2               --------->ATERF1(1)               --------->ORA47(2)              <---------RAP2.3(1)              ------>NtERF2              <---------ATERF1(1)             --------->DEAR3(1)            --------->ATERF1(1)                        <----------DOF2                         <-----           <-----------HVH21                         ------>ZmHOX2a(1)                         ------  <------ZmHOX2a(1)--------->SPL7             <---------YAB1                                  <------ ------->DOF2<---------DEAR3(1)          <---------------AtSPL8                  --------------->AGL15 >ZAT2     <---------ATERF1(1)           <---------------AtSPL3<----------DOF2   <---------------AGL15 -ZAT2    --------->ANAC46      <---------TOE1(2)--------->ARR14(2)  <----------DOF2<---------YAB1   aaaaggacacctccgtcgccgaccggctcgctcgtatgaaaatcaagtacgattcctctttccttctttctcttttttgttttcttcttatagctactgc  13048700                                                               ------>ZmHOX2a(2)                                                             <---------ARR11(3)                    --                                                             --------->ARR11(3)                    <-        <---------ANAC58                                 --------->YAB1                            <-        <---------ANAC58                               --------->ARR11(3)                 <----------DOF2    --------->At4g35610                                <---------ARR11(3)           --------->ARR14(2) ----At4g35610                              <-----------GT1<---------YAB1           <---------ARR14(2) --->At4g35610                           <----------DOF2<------ZmHOX2a(2)        <---------ANAC58  -- -----RAV1(1)                 <---------GLK1(1)   --------->TOE2(3)              <---------ANAC58 <--   tggagaagatgcctgagaattgaaaaccctagaaatctccaggcttttacattcttagatcatgatctcgatgttttctaaatgcttatctgctttctcg  13048800                                  --------->GLK1(2)                                --------->KAN4(1)                                <---------KAN4(1)          <-----------GT1      <---------KAN4(2)                                           --------->ARR11(3)  <---------At4g35610    ---------->DOF2                                                   --------->AHL20(1)  --------->At4g35610  ------>ZmHOX2a(1)                                               <-------TEIL ------->ZAT2         --------->TOE2(3)                      <---------TOE1(3)      <---------MYB46(3) --------ZAT2   <---------GLK1(2)--------->YAB1              <---------TOE2(3)     <---------------AtSPL8 --------At4g35610    --------->TOE1(3)                  <----------DOF2           <---------------AtSPL3 ------->At4g35610  --------------->AGL15          --------->ANAC46                --------------->AtSPL8 ---------RAV1(1)   <---------------AGL15        <-----------GT1           --------->REM1(1)   ctgctgctgaatttactagcttctccttaaaggaataatcttttggccattttacacaactttaaggtttcaaaactacaacttggtggtacatatattg  13048900  Previous    Next  AGI:  At4g25540.1    Description:  MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3). Identical to DNA mismatch repair protein MSH3 (MSH3) [Arabidopsis Thaliana] (GB:O65607;GB:O81818); similar to MSH6 (MUTS HOMOLOG 6-1) [Arabidopsis thaliana] (TAIR:AT4G02070.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ77304.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15508.1); similar to H0124B04.17 [Oryza sativa (indica cultivar-group)] (GB:CAJ86300.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain DNA mismatch repair protein MutS-like, N-terminal; (InterP Range:  from: 13042566    to: 13048222    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g25550.1    Description:  protein binding. similar to ATCFIM-25/CFIM-25 (ARABIDOPSIS HOMOLOG OF CFIM-25) [Arabidopsis thaliana] (TAIR:AT4G29820.1); similar to unknown [Populus trichocarpa] (GB:ABK95571.1); contains InterPro domain Cleavage and polyadenylation specificity factor, 25 kDa subunit (InterPro:IPR016706) Range:  from: 13048386    to: 13051178    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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