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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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   ------>ZmHOX2a(2)
  <---------GLK1(1)
  <------ZmHOX2a(2)
  --------->GLK1(1)
---->ZAT2
-----At4g35610
-----ZAT2                             ------->GAMYB
---->At4g35610                       --------->MYB46(3)
--->ALFIN1               --------------->AtSPL8
>MYC3                  --------->ARR14(2)          --------->YAB1                   <---------ALFIN1
-MYC3  ------>NtERF2   <---------ARR14(2)       --------->AtMYB61               <---------At4g35610
>MYC2  --------->LBD16 --------->GLK1(2)------>MYB46(1)                     <----------DOF2
-MYC2<---------LBD16  <---------GLK1(2) ------>MYB83                 <---------ANAC58
--ANAC58          --------->LBD16    <------------MYB.PH3(2) ----------->RAV1(2)--------->At4g35610
--ANAC58-------------->OsCBT ------->TEIL      --------->MYB46(3)    <---------ANAC58  <---------ALFIN1
 
ctgcgatctccgcgtcttctccgaagaatctgtacctgtaaccaacttccaccatcaaaaccacatctgggtacttgctctttagctccaccacttgctg  13047800
                                                            --------->LBD16
                                                           --------->HSFC1(1)
                                <---------HSFB2a(2)        <---------HSFC1(1)
                                --------->HSFB2a(2)        --------->HSFB2a(2)
                               <---------ANAC46            <---------HSFB2a(2)
                               <---------LBD16        --------->HSFC1(2)
                          <---------ANAC58            <---------HSFC1(2)       <----------DOF2
                          <---------ANAC58            --------->HSFB2a(1)   --------->ARR11(3)   ===
                          <---------bZIP60(2)         <---------HSFB2a(1)   <---------ARR11(3)   ---
                ------>ZmHOX2a(1)               --------->LBD16            --------->GLK1(1)   <----
     <---------ANAC58   <---------TGA2(2)       ------>NtERF2              <---------GLK1(1)   -----
     <---------ANAC58  ----------->TGA1        <---------DEAR3(1)   <---------LBD16 ----------->GT1
     <---------ANAC46--------->YAB1           <---------LBD16  --------->GLK1(1)    <---------ANAC46
  <---------ATHB12   <---------ICU4          ------>ZmHOX2a(1) <---------GLK1(1)  <---------ANAC46
 
ttccaatggtgtgtatttcctcgatgatgacgtttcgggaacatattcctccggcgagggttccagaaatctctggagaaatctttggtgtaaattggga  13047900
                                                        --------->ALFIN1
                                                      --------->DEAR3(1)
                                                      <---------ANAC46
                                                     --------->ATERF1(1)
                                                     <------NtERF2
                                                    ------>NtERF2
                                                    <---------RAP2.3(1)
                                                    <---------ERF1
                                                    <---------ATERF1(1)
                                                    <---------DEAR4(2)
                                                   <---------RAP2.3(3)
                                                   --------->ATERF1(2)
                                                   <---------ATERF1(2)
                                                   <---------DEAR3(1)
                                                   <---------ANAC46
                                                   --------->DEAR3(1)
                                                   <---------RAP2.3(2)
                                                  <---------ABI4(1)
                                                  <------NtERF2
                                                  ------>NtERF2
                                                  --------->RAP2.3(1)
                                                 <---------DEAR4(2)
                                                 <---------ATERF1(1)
                                                <---------DEAR3(1)
                                               <---------LBD16
                                              --------->O2
                                              <---------O2
                                              <---------bZIP60(2)
                                              <---------ANAC46          <---------HSFC1(2)
                                              <---------TGA1a  <---------DEAR3(1)
                                           ----------->HVH21   --------->ETT(1)
                     <------ZmHOX2a(1)     ----------->TGA1 <---------MYB46(3)                    <-
             <---------ANAC58             <-----------HVH21--------->ALFIN1                      <<<
           <---------YAB1                <---------ANAC58  <---------AtMYB61 <---------YAB1      ---
============================HOX2a_HOX2a  <---------ANAC58<---------ZAT2 --------->HSFC1(2)      ----
--->ZmHOX2a(2) <---------ZAT6      <---------DAG2<---------RAP2.3(1)    --------->At4g35610     <---
-----ARR14(2)<---------ANAC46      <----------DOF2--------->ATERF1(1)  --------->GLK1(2)       <----
---->ARR14(2)<---------ANAC58      =====================bZIP_DOF <------NtERF2         <------ZmHOX2a(1)
 
tcgggtactgggttttgagtgtgaggagaaagtttaggctttttgggtgacgcggcggcgaggtggtcggagagaagcttacgcttggaaggagagaagg  13048000
                        --------->ALFIN1
          --------->ARR11(3)
          --------->ARR14(2)
          <---------ARR14(2)
         <---------RVE1(1)
         <---------GLK1(1)
         <---------CCA1(2)
         --------->GLK1(1)
        <---------ARR14(2)                           --------->MYB52(2)
        ----------->ARR10                            <---------ANAC46
        --------->ARR14(2)     --------->ATHB12      <---------ANAC58
       <------NtERF2<------NtERF2            <---------ARR14(2)
      --------->LBD16  <------NtERF2         <---------GLK1(2)
     <---------ANAC58<---------DEAR3(1)    --------->LBD16
     <---------ANAC58<---------ANAC46    <---------LBD16
     <---------ANAC46<---------DREB2C(2) <-----------------AGL1
    <---------LBD16 --------->ATERF1(1)  ----------------->AGL1
  --------->ALFIN1  <---------ABI4(1)    <-----------------AG
------TEIL<---------ARR11(3)  <---------YAB1 --------->ARR14(2)  <---------ARR14(2)
<<<<<<<<<<<<<<LFY  ------>NtERF2--------->ARR11(1)   <---------ANAC58
------>CCA1(2)    <---------DEAR3(1)    -------->P  <-------TEIL --------->ARR14(2)
----->ARR14(2)    ----------->HVH21     --------->MYB52(1)    <------NtERF2                       --
------ARR14(2)    --------->ALFIN1   <---------At4g35610     <---------LBD16          --------->CCA1(2)
--ZmHOX2a(1)   <---------DEAR3(1)    --------->At4g35610    <---------ANAC46       ----------->ARR10
 
atacagtggcggatatcttcggtggcggtgttgatgattcggctaccggattcggttcgtgagtcggggatttgggtttgggagcgaagaaacgagaaat  13048100
                          <----------DOF2
                          <---------DAG2
                         <---------ANAC58
                         <---------ANAC58
                    <---------ICU4
                   <---------ATHB51                                    <---------MYB46(3)
           <---------ANAC58                                            <---------ANAC58
           <---------ANAC58     --------->YAB1                         <---------ANAC58
      <----------DOF2 <---------WOX13(1)                         <---------ANAC58           <-------
 <---------At4g35610--------->ATHB51                             <---------ANAC58          <-------GAMYB
 --------->At4g35610--------->ATHB12                             <---------ANAC46          <--------
 <---------ZAT2    <---------ATHB12                             --------->ALFIN1           <--------
<-----------RAV1(1)--------->ICU4                             <------MYB46(1)     <---------ANAC58
--------->RAV1(2)  <---------YAB1         ------>ZmHOX2a(1)   <------MYB83        <---------ANAC58
 
cgtctgctgcttttgcttgcccataattgctttattcgtaatctcctccgtttaagagaaatggaaggtcgtggtcgtggctatggcgaacttgggttgc  13048200
                <---------TOE2(3)                                                                 <-
                <---------TOE1(2)                                                        <---------YAB1
      <---------ZAT18                                                     <---------MYB46(3)      --
      --------->ZAT18                                                  --------->MYB52(1)--------->ICU4
    <---------LBD16     --------->WOX13(1)                   ----------->HVH21        <---------MYB52(1)
   <---------ANAC58   ------------>CBF            <---------ZAT14  --------->ANAC58  --------->At5g28300
-P <---------ANAC58  *TSS                         --------->ZAT14  --------->ANAC58 ----------->GT1
-ANAC58         <---------TOE2(2)           <-----------HVH21----------->TGA1       <---------MYB46(3)
-ANAC58   <----------DOF2            --------->WOX13(1)  ---------->DOF2  <---------DEAR3(2)    <---
 
caattttcgcgcgctttcttaggttgccaatctctctaatccatcactgtcactgaacaacaaagtgacgaagccatcggttcggagcggttattatggg  13048300
                                                                           <------MYB46(1)
                                                                           <------MYB83
                                                                          --------->MYB111(2)
                                                                          --------->MYB111(1)
                                                                          <---------MYB46(3)
                                                                          <---------AtMYB61
                                                                          --------->ALFIN1
                                                                   --------->HSFB2a(2)
                                                             <---------ZAT18          <---------AHL20(2)
       ----------->TBP                                       <---------ZAT14         *TSS
       <---------YAB1     --------->AHL20(2)                 --------->ZAT14  <---------MYB46(3)
   <----------DOF2        <---------AHL20(2)                 --------->ZAT18 <---------AtMYB61
-----NtERF2       <---------MYB52(1)              --------->YAB1   <---------HSFB2a(2)--------->AHL20(2)
------->LBD16    <---------RAP2.6(3)  --------->DAG2         <---------ARR14(2) <---------bZIP60(1)
------LBD16      ----------->GT1     ---------->DOF2         --------->ARR14(2) --------->bZIP60(1)
 
ccgggtctttataaatgggccggtattttttaaatgggcctaaagtgccactataacaaatgagtatactctagaagttggtggtgtcattaattctccg  13048400
                                  --------->DEAR3(1)
                                 --------->MYB46(3)
                                ------>NtERF2
                               <---------ALFIN1
                            <---------TCP20
                            --------->PCF2
                          <---------SPL7
                        --------->SPL7
                      ------>NtERF2<---------At4g35610
                      <-----------HVH21
                      <---------RAP2.6(3)
                      <---------SPL7<----------CDC5
                     <---------ANAC58
                 <---------MYB52(1)--------->At4g35610                          <---------GLK1(1)
                <-------GAMYB --------->MYB46(3)                               --------->ARR11(3)
               --------->ANAC46--------->ANAC46                                <---------ARR11(3)
   ------>ZmHOX2a(2) <---------ANAC58    <---------ZAT6             --------->ANAC46
  <------ZmHOX2a(2)  <---------ATERF1(2)<---------WOX13(1)        --------->ANAC46
 <---------ARR11(3) --------------->AtSPL3  <---------WOX13(1)    <---------ALFIN1 <-----------GT1
 
tcgagatcgcttctctccccgttgccgtccgtccccaccgctgagtgatagatcgaaacagagaaacacacacggcgaagaagatttcaccatattttgt  13048500
                                                   -------->P
                                                   --------->MYB52(1)
                                                   <---------ARR14(2)
                                                   --------->ARR14(2)
                                                --------->ANAC55(2)
                                                --------->ANAC58
                                                --------->ANAC55(1)
                                                <---------ANAC55(2)
                                                --------->ANAC46                      --------->ANAC58
                                                --------->ANAC58                      --------->ANAC58
                                               --------------->AtSPL8            <---------TOE2(3)
                                               --------------->AtSPL3           --------->MYB52(1)
                                        <---------MYB46(3)                    <---------MYB52(2)
         <-------GAMYB                  ----------->GT1              --------->At4g35610
     --------->GLK1(2)               <---------ZAT2------->TEIL      <---------At4g35610         ---
    --------->ARR14(2)               <---------At4g35610             <---------ZAT2<------ZmHOX2a(1)
    <---------ARR14(2)             <-----------RAV1(2)--------->ANAC46<---------GLK1(2)    <--------
    <---------GLK1(2) --------->CCA1(2)--------->ALFIN1  <----------DOF2<---------LBD16    ---------
 
ctaagtggattctgttgagagagagagatggctatgtctcaggtggtgaacacgtacccgctttcgaactacagcttcggaactaaggaacccaagctgg  13048600
                     --------->ZAT2
                 --------->MYB52(1)
                <---------SPL7
                ------>NtERF2
                --------->ORA47(1)
               ----------->HVH21
               --------->DEAR3(1)
              --------->ORA47(2)
              --------->ATERF1(1)
              --------->DEAR3(2)
              --------->RAP2.3(1)
              <------NtERF2
             <---------RAP2.3(1)
             ------>NtERF2
             <---------ATERF1(1)
            --------->DEAR3(1)
           --------->ATERF1(1)                        <----------DOF2                         ------
          <-----------HVH21                         ------>ZmHOX2a(1)                         <-----
 <------ZmHOX2a(1)--------->SPL7             <---------YAB1                                  <------
------->DOF2<---------DEAR3(1)          <---------------AtSPL3                  <---------------AGL15
-ZAT2     <---------ATERF1(1)           <---------------AtSPL8<----------DOF2   --------------->AGL15
>ZAT2    --------->ANAC46      <---------TOE1(2)--------->ARR14(2)  <----------DOF2<---------YAB1
 
aaaaggacacctccgtcgccgaccggctcgctcgtatgaaaatcaagtacgattcctctttccttctttctcttttttgttttcttcttatagctactgc  13048700
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AGI:  At4g25540.1   
Description:  MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3). Identical to DNA mismatch repair protein MSH3 (MSH3) [Arabidopsis Thaliana] (GB:O65607;GB:O81818); similar to MSH6 (MUTS HOMOLOG 6-1) [Arabidopsis thaliana] (TAIR:AT4G02070.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ77304.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15508.1); similar to H0124B04.17 [Oryza sativa (indica cultivar-group)] (GB:CAJ86300.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain DNA mismatch repair protein MutS-like, N-terminal; (InterP
Range:  from: 13042566    to: 13048222    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g25550.1   
Description:  protein binding. similar to ATCFIM-25/CFIM-25 (ARABIDOPSIS HOMOLOG OF CFIM-25) [Arabidopsis thaliana] (TAIR:AT4G29820.1); similar to unknown [Populus trichocarpa] (GB:ABK95571.1); contains InterPro domain Cleavage and polyadenylation specificity factor, 25 kDa subunit (InterPro:IPR016706)
Range:  from: 13048386    to: 13051178    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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