Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  <----------DOF2               <----------DOF2            --------->DREB2C(2)            --------->DEAR3(1)            --------->RRTF1(3)            --------->RRTF1(2)            <---------ALFIN1            --------->RAP2.6(2)            --------->RAP2.3(2)            --------->RAP2.3(3)           --------->ATERF1(1)           --------->RAP2.6(1)           --------->ORA47(2)           --------->DEAR4(2)           <------NtERF2           --------->RAP2.3(1)                             ------>NtERF2           --------->ERF1                                 --------->RAP2.6(2)           --------->RRTF1(1)                             --------->RAP2.3(2)          <---------ATERF1(1)                             --------->ANAC46          --------->At4g35610                             >>>>>>>>>AtERF-2          --------->DREB2C(1)                             >>>>>>>>>AtERF-1          ------>NtERF2                                   >>>>>>>>>AtERF-3          <---------RAP2.3(1)                             --------->RAP2.3(3)          <---------DREB2C(1)                             >>>>>>>>>AtERF-4          <---------DEAR4(2)                              --------->ATERF1(2)         --------->RAP2.3(3)                              >>>>>>>>>AtERF-5         --------->RAP2.3(2)                              --------->DEAR3(1)         ------->GAMYB                                    <---------ATERF1(2)         --------->RAP2.6(2)                             --------->ERF1         --------->ATERF1(2)                             --------->ATERF1(1)         --------->DEAR3(1)                              --------->MYB46(3)         <---------ATERF1(2)                             --------->RAP2.3(1)                       <-         --------->ANAC46                               <---------ATERF1(1)                   ------>ZmHOX2a(2)        --------->ERF1                                  --------->At4g35610                  <------ZmHOX2a(2)        --------->ATERF1(1)                             <---------At4g35610                  --------        --------->DEAR3(2)                             --------->ARR14(2)                   ---------        --------->MYB46(3)                       --------->ARR14(2)      <------NtERF2      ---------        --------->RAP2.3(1)                   --------->LBD16  --------->ANAC58             <--------       --------->At4g35610                   <---------LBD16<------NtERF2<---------At4g35610<--------       <---------At4g35610             <-------TEIL<-------TEIL--------->ANAC58             ---------     <-----------RAV1(2)              <--------P <---------ARR14(2)    <---------WRKY12     ---------   <-----------HVH21   <---------GLK1(1)     <---------ANAC46---------->DOF2                <-------- <------NtERF2 <---------DAG2     <-----------RAV1(2)  <---------ARR14(2)--------->At4g35610<-------- --------RAP2.6(2)     --------->GLK1(1)     --------->ANAC55(2)       <---------WRKY38(1)  <-------- -------LBD16 <------NtERF2<---------ANAC58  <---------ANAC55(2)     <-----------HVH21     <---------CCA1(2) ----->ANAC46------>NtERF2 <---------ANAC58 <---------LBD16<---------RAP2.6(3)            -----------   cgcggcttcagccgccgccttttggatttccttggcacaggttgattccgggattcgtagccgccaagccgagtcagcgaaattgagacaggcagatctg  13015800                      <---------ANAC46                   ==============================================bZIP_DOF                   --------->O2                   --------->DEAR3(1)                   <---------bZIP60(2)                   --------->bZIP60(2)                   <---------O2                   --------->TGA1a                   <---------TGA1a                   <---------bZIP60(1)                   --------->bZIP60(1)                  --------->ATERF1(1)                  <------NtERF2                 ------>NtERF2                 <---------ATERF1(1)                ----------->HVH21                <---------DEAR3(1)                --------->DEAR3(1)               --------->ATERF1(1)               --------->RAP2.3(1)               <------NtERF2   ------->MYC2              <---------ORA47(2)              <---------RAP2.3(1)              <---------ERF1   <-------MYC3              <---------RRTF1(1)              ------>NtERF2 <------------OsbHLH66 --------LBD16<---------ATERF1(1) ->CCA1(2)    <---------DEAR4(2)    ------>NtERF2 >ARR11(3)   <---------ATERF1(2)   >>>>>>>>>AtERF-3 >ARR14(3)   <---------RAP2.3(2)   >>>>>>>>>AtERF-4 ---ARR10    <---------RAP2.6(2) <---------ZAT2 -AGP1       --------->ATERF1(2) --------->At4g35610    <---------HSFB2a(1) >AGP1       <---------RAP2.3(3) --------->ZAT2         --------->HSFB2a(1) >ARR14(2)   <---------DREB2C(2) <---------At4g35610  ---------->DOF2           <---------ANAC58 -ARR14(2)   <---------ANAC46  ------->PIF5      <---------ANAC46               <---------ANAC58   -- -ARR14(3)   <---------RRTF1(3)<-------PIF5    <---------MYB46(3)        ------>ZmHOX2a(1)       ---- -ARR11(3)   <---------RRTF1(2)------->MYC3  <---------At4g35610     <---------ARR14(2)          <--- >ARR10      <---------DEAR3(1)<-------MYC2  --------->At4g35610     --------->ARR14(2) ---------->ID1   ccacggagagctatggcggcgacgtcgtgagcacgagctgccatctcagcggtttggaaagtcccgagccaaatcctcgttttcttgtttggctctctca  13015900                                                              --------->ANAC55(2)                   --------->HSFB2a(1)                        --------->ANAC46              <---------LBD16                                 --------->ANAC58             -------->P                              <---------ANAC58             --------->MYB52(1)                      <---------ANAC58         ------>MYB46(1)                             <---------TGA1a                             <---         ------>MYB83                                <---------O2 <---------HSFC1(2)             <---        <---------ALFIN1                             <---------bZIP60(2)                         <---       --------->MYB46(3)                           <-----------------------TaNAC69(2)           ----      --------->ANAC58  <----------DOF2           ----------->HVH21                <---------MYB46(3)      --------->ANAC58  =======================================bZIP_DOF          <---------MYB52(1)    <---------ALFIN1 --------->GLK1(2)            ----------->TGA1--------->HSFC1(2)    <---------ANAC58  <---------ALFIN1 <---------HSFC1(2)           <---------ANAC58  --------->HSFB2a(1)   <---------ANAC58 ----->GAMYB ==================================================MYC_MYB          <---------At4g35610 ----->At4g35610   --------->HSFC1(2)           <---------ANAC58  <---------HSFB2a(1)   <---------ANAC46 ------At4g35610--------->LBD16      ------>ZmHOX2a(1)        --------->ANAC58  --------->LBD16  ----   actcacacacccacttaccggagtttctttgacgaactcctctgtaaattgggtgacgagtctcacgaaacttcttccttcccgctggtttcttggggca  13016000        --------->ZAT2        <---------ZAT2        <---------HSFB2a(1)        <---------HSFC1(2)        --------->HSFC1(2)       --------->ANAC58       --------->ANAC58                        --------->ANAC58 <-------PIF5                     <------ZmHOX2a(1) ------->PIF5               ----------->RAV1(2)--------->ANAC58 ---NtERF2                 ------>NtERF2  --------->ARR14(2)   <---------ICU4                      -- ------At4g35610          --------->DEAR3(1)   --------->ANAC55(2)                            ------- ------ZAT2             <---------At5g28300    <---------ANAC55(2)        --------->DAG2    <-------- ----->At4g35610       <-----------GT1<---------LBD16         <---------ATHB12            --------->ATHB12 ----->ZAT2           --------->MYB46(3)--------->LBD16  ------>NtERF2  ---------->DOF2  <-------TEIL   gctcgtggcaagcttcggactgtaatcaccgcctgaggaaaccggagactcgtaatcggagccaaacatttcagaaaaggcagaaaatgagttcattgat  13016100                                                          <------ZmHOX2a(2)                                                          --------->GLK1(1)                                                          <---------GLK1(1)                                                         <---------ARR14(3)                  <-------                 --------->ANAC46                        <-----------ARR10               --------->AHL20(2)      <---------ZAT14                                    --------->ARR14(3)             --------->AHL20(1)      --------->ZAT14                                    <---------AGP1   <---------AtLEC2   --------      --------->ZAT18        <---------TOE1(3)           <---------ARR14(2)             <---------AHL20(1)    --------->ZAT14          <---------TOE2(3)           --------->ARR11(3)             <---------AHL20(2)  <---------------AtSPL8     --------->DAG2  ----------->GT1      <----------DOF2    --------->AHL20(2) ------->At4g35610  --------->GLK1(2)        <---------ZAT6------>ZmHOX2a(2)      --------->YAB1 -->YAB1         --------->ANAC58        <---------ZAT14 <---------ARR11(3)       ----------->GT1 <-- -WOX13(1)       --------->ANAC58   <---------YAB1       --------->ARR14(2)      <---------YAB1 <----   cagaagagtactctgtttcaagaaactggataaggtttatgagagtagagtaagtagaagatctctgtctttttttgtatggtatgataaaatatttatt  13016200                                                                                                    <                                                                                        <---------CCA1(1)                           <--------P                                                   <---------RVE1(1)                       <-----------RAV1(2)                                             <---------ARR11(3)                  <---------------AGL15                                                --------->ARR11(3)                  --------------->AGL15                                              ----------->ARR10                 <-----------------AGL1                      --------->ARR11(3)    <------NtERF2    <         <----------DOF2<---------TOE2(3)              <---------ANAC58           <------NtERF2     < --AHL20(2)      ----------------->AG                  <---------ANAC58    <------------CBF         < ->AHL20(2)      <-----------------AGL3          <-----------RAV1(1)    <-----------TBP<---------ARR14(2) ---------GT1    <-----------------AGL2    <---------HSFB2a(2) <---------ANAC58   --------->LBD16   < -------GT1  <----------DOF2  *TSS         --------->HSFB2a(2) <---------ANAC58 <---------LBD16 <----   tctctatctatctttcttttctaattcaggtaagtgtttgaagttatagaaatgttggagtgagagcttgctgtttatattggccggaagatatttggat  13016300                  --------->HSFC1(2)            --------->ANAC58                  <---------HSFC1(2)            --------->ANAC58                  --------->HSFB2a(1)    <-------MYC4                <------NtERF2            ------->PIF5               --------->LBD16           ------->MYC4             <---------LBD16             ------->MYC3             <<<<<<<<<<CAMTA3            <-------PIF5             <<<<<<<<<<CAMTA5            <-------MYC3             <<<<<<<<<<CAMTA2            <-------MYC2         <---------SPL7                  ------->MYC2     <---------PCF2                     <---------TGA1a     <---------ANAC46                   --------->TGA1a <<<<<<<<<<<<<<<<<<<<<<<<<<CAMTA3       --------->PIF3(3) <<<<<<<<<<<<<<<<<<<<<<<<<<CAMTA2       <---------O2                               <---------YAB1 -----------RAV1(1) --------->GLK1(2)   <---------PIF3(3)       --------->PCF2   <---------ICU4 <<<<<<<<<<<<<<<<<<<<<<<<<<CAMTA5       --------->O2   --------->At4g35610      --------->ICU4------- <<<<<<<<<<<<<<<<<<<<<<<<<<CAMTA1       <---------ANAC46        <------ZmHOX2a(2)--------->YAB1 <---- -----GLK1(1)<<<<<<<<<<CAMTA1           <<<<<<<<<<HY5  <---------At4g35610 ----------->GT1 <---------   atttgtggggtcgaacgcggagtttctgtctctgtgaatgccacgtggataagaaacagctaagcgatcccacggttttgtaattatcaaggctgtcaat  13016400                      --------->WRKY38(1)                    <----------DOF2                    ------>ZmHOX2a(1)              <-------MYC3              ------->MYC3           ====================bZIP_DOF    ----------->HVH21           <---------TGA1a            <---------HSFB2a(1)      --------->At4g35610             --------->HSFC1(2)     <---------ARR14(2)               <---------HSFC1(2)  <---------MYB46(3)     --------->ARR14(2)              ----------->ARR10 <---------MYB46(3)            <-----------GT1     --------->GLK1(2)--------->WRKY12--------->HSFB2a(1)<--------P                 <-----------GT1    <---------GLK1(2) ----------->HVH21 --------->GLK1(2)<---------WOX13(1)     <---------AHL20(2) -->WOX13(1) --------->O2<-----------------AG     <---------ZAT14            ------->TEIL -----ATHB12 <---------O2<-----------------AGL1   --------->ZAT14<----------DOF2--------->AHL20(2) <- --HVH21----------->HVH21----------------->AGL1  <-----------HVH21   <---------TOE2(3)     <---------YAB1   cactgagaatctgacatgtgtcctttgacccatcttgggaagtttctgacccttcactggttgatgcctttagggtatgaatttttttaacttcttattg  13016500                                         <---------AHL20(2)                                        --------->AHL20(2)                                     <--------HAHB4                                     --------->ATHB51                                     <---------ICU4                                    --------->ICU4                                    <---------YAB1                                  --------->YAB1 <---------YAB1                                     -                                 --------->MYB46(3)      --------->ANAC46                           <                              --------->MYB46(3)<---------AHL20(1)                           --------                           --------->ANAC58     <---------AHL20(2)                   <---------DAG2 <                           --------->ANAC58   <---------YAB1                     ---------->ID1    <-     <-----------RAV1(1)  --------->SPL7<---------AHL20(2)                     <-----------RAV1(1)---     --------->ALFIN1   <---------SPL7 <---------YAB1   --------->LBD16    <---------YAB1   <--------  ------->TEIL        <---------------AtSPL8  <---------AHL20(2)           <---------AHL20(2)-------- --------YAB1         <---------------AtSPL3<---------ICU4           ----------->GT1 <----------DOF2-   tatgaatgtgtggctgtagtttatagggtacgacaaccattattaaatattatttttccacgaataacaaattgtttataattgtcgcttttctatggta  13016600                    ----------->HVH21                   --------->LBD16                  ----------->GT1                  <---------ANAC58 <---------ICU4   <---------ANAC58 -------->AHL20(2)<---------ANAC46 ---------ATHB51  <---------ANAC55(1) --->GT1     --------->ICU4 ---------AHL20(2)<---------ANAC55(2)                                                           ----- --------AHL20(1)------>ZmHOX2a(2)           <----------DOF2           <---------ANAC58         <---- ------>YAB1 <---------YAB1   <---------CCA1(1)                        <---------ANAC58   --------->HSFB2a(2) -TOE2(3)  <---------ICU4     <---------RVE1(1)               --------->AtLEC2     <---------ARR14(2) ->YAB1   --------->ICU4     <---------ARR11(3)          <-----------GT1           --------->ARR14(2) -------->ICU4-------->HAHB4 --------->ARR11(3)      <----------DOF2   <---------ANAC46   <---------HSFB2a(2)   aaataattagacataatgatccgtgaaacgagatattttcaaatgctctttctgtcttttctccattcacatatcgtgcattgcaaatacttctagagta  13016700  Previous    Next  AGI:  At4g25470.1    Description:  CBF2 (FREEZING TOLERANCE QTL 4); DNA binding / transcription activator/ transcription factor. Identical to Dehydration-responsive element-binding protein 1C (DREB1C) [Arabidopsis Thaliana] (GB:Q9SYS6;GB:O65613;GB:O82776;GB:Q08A88;GB:Q5QE69); similar to CBF1 (C-REPEAT/DRE BINDING FACTOR 1), DNA binding / transcription activator/ transcription factor [Arabidopsis thaliana] (TAIR:AT4G25490.1); similar to C-repeat binding factor-like protein [Chorispora bungeana] (GB:AAY21899.2); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; ( Range:  from: 13015287    to: 13016230    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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