Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <---------ANAC46                                                                                    <---------ANAC55(2)                                                                                    --------->ANAC55(2)                                                                                    <---------ANAC55(1)     <-----------RAV1(1)                        <---------ICU4                    <---------ICU4 ---TOE2(3)                                     -------->ATHB1                 --------->YAB1 ->DAG2                                        --------->AHL20(2)              <---------ICU4 >MYB52(1)                                     <---------ATHB51               <---------YAB1 ->DOF2                                        <---------AHL20(2)             <---------AHL20(2) ---AGL15                                      --------->ICU4               --------->YAB1 <---------AHL20(2) -->AGL15                              ----------->GT1                     <---------AHL20(2) ----AG                  ---------->DOF2    --------->AHL20(2)             --------->AHL20(2) ----AGL1<---------MYB46(3)          <---------ANAC46         --------->AHL20(2) --------->ICU4   aaattttgtgttggatgatggtatgacaaaagctgtttggagggtataaattattaagttgacattaatttcaaaaatttataattatgtgttttaattc  12985400                     <---------ARR14(2)                                             --------->ANAC58                     <---------ARR11(3)                                             --------->ANAC58                     --------->ARR14(2)   <---------AHL20(1)                      ---------->DOF2                    <------ZmHOX2a(1)    <---------AHL20(2)                      <---------ATHB12              <---------ZAT14         ------->TEIL                         <-----------GT1              --------->ZAT14      <---------ANAC46                     ----------->GT1     <---------AHL20(2)            <---------ANAC55(2)                  <---------MYB46(3)    --------->AHL20(2)  --------->AHL20(2)--------->AHL20(1)            --------->MYB52(2)    <---------AHL20(2)  <---------AHL20(2)--------->ARR11(3)         ------------>MYB.PH3(2)  <------   tcttaattaaataaactgtagaggattttattttgttatgtatatatattgactataagttgtattctactagtttgttacaaatcaagcccgaggctca  12985500                                                                               --------->ATHB51                                                                               --------->ATHB12                                                                      --------->ARR14(2)                                                       ---------->DOF2<---------ARR14(2)                                            --------->AHL20(2)       <---------MYB52(1)                                            <---------AHL20(2)      --------->LBD16 <------MYB83                                       <---------AHL20(2)          <---------ANAC58 <------MYB46(1)                                       --------->AHL20(2)          --------->ANAC55(2)              -                                       <---------AHL20(1)          <---------ANAC58--------->MYB59 <-            --------->AHL20(2)         --------->AHL20(1)          <---------ANAC55(2)   ------>ZmHOX2a(1) -TEIL --------->AHL20(2)             --------->AHL20(2)   ----------->GT1   <----------DOF2------>ZmHOX2a(1)   tcccataaatgaaataaaaaaaaactgataactatttcaattttatttaaaaaaaaaaaaagagtaattccgtaacctgcattatttggtcctcctactg  12985600                   --------->MYB52(1)                   --------->YAB1                   <---------ICU4                                     --------->ANAC46                  <---------AHL20(2)                                  <---------TOE2(3)              --------->AHL20(2)                                     ---------->DOF2                <       <---------AHL20(2)                                 ----------->RAV1(2)   --------->WOX13(1)---      --------->AHL20(2)   ------>ZmHOX2a(1)           --------->HSFC1(2)     <---------YAB1 -------- ------>TEIL  <---------AHL20(2)                       <---------HSFC1(2)  <------NtERF2--------->ANAC58 --------CCA1(2)  <---------ATHB51        <------ZmHOX2a(1)       <----------DOF2       --------->ANAC58   tgtatctatttaatatttaaataatggtcctccctctcacctaaggagacatagagaaccatctggttctttaaggcaccatcattcaacaagtaaacaa  12985700                                                   --------->ZAT6                                                ----------->HVH21                                               ------>ZmHOX2a(2)                                              <------ZmHOX2a(2)                                              --------->At4g35610                                              <---------At4g35610                                              --------->CCA1(2)                                             <---------AGP1                   --------->ANAC58          --------->AGP1                   --------->ANAC58          <---------ARR14(2)               <-----------GT1               <---------ARR11(3)                                 -----               --------->YAB1                --------->ARR14(2)                                 -----            --------->YAB1                   <---------ARR14(3)                              <-------        --------->AHL20(1)            ------>ZmHOX2a(1)                                   --------->YAB1        --------->AHL20(2)            ================HOX2a_HOX2a                     ------>ZmHOX2a(1)        <---------AHL20(2)            <----------DOF2      --------->DAG2            --------->TOE2(3)       --------->AHL20(2)<---------ARR14(2) --------->GLK1(1)                       ------>ZmHOX2a(2)       <---------AHL20(2)--------->ARR14(2) <---------GLK1(1)                      <------ZmHOX2a(2) ---------TOE2(3)  --------->ANAC46   ===============HOX2a_HOX2a ---------->DOF2  <---------ARR14(2) ------->DOF2 <---------YAB1      <---------ARR11(3)      ---------->DOF2         --------->ARR14(2) ---->CBF   <---------ICU4 --------->MYB46(3)--------->ARR11(3)  *TSS             ------->TEIL-------   taaaggaaattaaattatcacaagacagaaccacaaaatcctttggagatctgacactggtaaagctcaaagtgtcaaactatggatccttataagaatc  12985800                                                                  <------NtERF2                                                                <---------ARR14(2)                                                                --------->ARR14(2)                                                               <---------At4g35610                                                               --------->At4g35610                                                               <------NtERF2                                                               <---------ABI4(2)                                                               --------->ATERF1(1)                                                               --------->RAP2.3(1)                                                              ------>NtERF2                                                              <---------RAP2.3(1)                                                              <---------MYB46(3)                                                              --------->ABI4(2)                                                              <---------ATERF1(1)                                                              <---------RRTF1(1)                                                              <---------DEAR4(2)                                                              <---------ERF1                                                              <---------RAP2.6(1)                                                              <---------ORA47(2)                                                              <---------DEAR3(2)                                                             <---------RAP2.3(3)                                                             --------->DEAR3(1)                                                             <---------RAP2.6(2)                                                             <---------DEAR3(1)                                                             <---------RAP2.3(2)                                                            <------NtERF2                                                            --------->ATERF1(1)                                                            --------->RAP2.3(1)                                                         <------NtERF2                                                         --------->At4g35610                                                      --------->At4g35610                                                      <------NtERF2  <---------MYB52(1)                                                      <---------At4g35610                                                     <---------ATERF1(1)                                                     <---------RAP2.3(1)                                                     <---------ERF1  <---------SPL7                                                     ------>NtERF2<---------LBD16                                                    --------->ATERF1(2)                                                    <---------RAP2.3(3)                                                    <---------RAP2.3(2)                                                 --------->ALFIN1------>NtERF2                                          <------NtERF2<-----------RAV1(2)                                         --------->LBD16<---------ATERF1(1)                                         <---------DEAR4(2)<---------RAP2.3(1)                                         <---------ATERF1(1)--------->DEAR4(2)                                         ------>NtERF2--------->ATERF1(1)                                        --------->DEAR3(1)<---------DEAR3(1)                                        --------->ATERF1(2)<---------ATERF1(1)                                        <---------ATERF1(2)<---------DEAR4(2)                                        <---------DEAR3(1)--------->DEAR3(1)                                       --------->DEAR3(2)<---------At4g35610                                       --------->ATERF1(1)<---------RAP2.3(2)                                      <---------ZAT2<---------RAP2.6(2) --------->ANAC58                                      --------->ZAT2<---------ATERF1(2) --------->ANAC58                                      <---------At4g35610<---------ZAT2--------->SPL1(2)       --------->DAG2                 --------->At4g35610--------->ATERF1(1)     ---------->DOF2                <-----------RAV1(2)<---------DEAR3(1) ---->TOE2(3)                       ---------->CDC5--------->RAP2.6(3) --------->SPL7 ---->YAB1                       --------->At4g35610<---------DEAR3(1) --------->RAP2.6(3)     ------ --GLK1(2)                       <---------At4g35610<---------ANAC46--------->LBD16   --------->At4g35610 -->GLK1(2)                  <---------MYB52(1)--------->ALFIN1<---------ZAT2         <---------At4g35610   ttaatccaaaaggttaccagagacagagaccgtttagctcagccggcgagagtggcggcagcggcggctccggtacggcccatgaaacagatgacaataa  12985900                               --------->ANAC58                      ----------->RAV1(1)                      ------>NtERF2                     ----------->HVH21                     --------->ANAC46                    --------->LBD16         --------->HSFB2a(1)   --------->ANAC46         <---------HSFC1(2)    --------->ANAC58         <---------ALFIN1         <---------HSFB2a(1)  --------->SPL7 --------->ANAC58    >>>>>>>>>TBF1  --------->DEAR3(1)   <----------ID1 --------->ZAT14 >>>>>>>>>TBF1  <---------ALFIN1   ---------->DOF2     <---------ZAT14  --------------->AtSPL8 --->YAB1--------->HSFC1(2) <---------SPL7   --------->ANAC58<----------DOF2        -------->P <-----   gaagaagaagaagcttctccaccgcgacatcgaacgccaaagaagacaagaaatggctacactctttgctactcttcgtactcacttacctcttaaatac  12986000                                                       <---------MYB52(1)                    --------                                                <---------DAG2                            -----------                                                <----------DOF2                       <------MYB46(1)                                             <---------AHL20(2)                       <------MYB83                                         <---------AHL20(2)                        --------->ARR14(1)                                         --------->AHL20(2)                        --------->CCA1(2)                                        <---------AHL20(2)                        <---------ARR14(2)               <---------ICU4           --------->AHL20(2)                        --------->ARR14(2)            --------->TOE2(3)           --------->AHL20(1)                        <---------ARR11(3)     <-------TEIL    <XXXXXXXXXXXXXXXXXXXMIR156A-F  ---------->ID1                --------->ARR11(1)< <---------TOE2(3)<-----------GT1       <---------AHL20(1)                        --------->ARR11(3)- --TEIL  <---------GLK1(2) <----------DOF2   <-----------GT1                    ----------->ARR10<---   atcaaggttcatattcttaattactcactcttttctctcaaatttatttactttttcgttatatcaattgttcgaagaaaccaagatttggtgagatttg  12986100                                                                                        <---------ANAC55(2)                                                                                 <---------ANAC46      <-------GAMYB  <---------MYB52(1)                          <----------ID1  --------->ETT(1) ->CCA1(2)         <---------ANAC46                         <---------AHL20(2)----------->HVH21 >ARR10 ----------->GT1         <---------AHL20(2)        <---------------AGL15<-----------HVH21 ---------ZAT2     <---------ANAC58                   <----------DOF2         --------->ALFIN1 -------->ZAT2     <---------ANAC58              <---------AHL20(2)       --------->At4g35610       - ------At4g35610  ---------->ID1--------->AHL20(2)   <---------ICU4  ---------->DOF2 <------ZmHOX2a(2)   gctgctagggttgtgaatatgtcgttttttgtatttaatttagttttgtatttaatctttatttatagggaaaaagagctgtgtcggatcatgtaaatgg  12986200                            --------->ANAC58                            --------->ANAC58                           <---------LBD16                        --------->ANAC58                        --------->ANAC58                    --------->ANAC58                    --------->ANAC58                                                   <---------AHL20(2)                    --------->ANAC55(2)                                     --------->ORA47(1)                    <---------ANAC55(2)                                   --------->DEAR3(2)       --                    --------->ANAC46                                     --------->MYB52(1)      <---                   <---------LBD16    <---------ARR11(3)                --------->ARR14(2)     ------              <---------TOE2(3)       --------->ARR11(3)       --------->MYB59       --------->CCA1(2) --------->At5g28300--------->ANAC55(1)                 <-----------------------TaNAC69(2)     ------ ---------->GT1 <------ZmHOX2a(1) ---------->DOF2      --------->CCA1(2)<---------ARR14(2)     <-----   agcggtaaatttcattaaggacacggaagcacggattaaagaacttagtgcaagaagagacgagttaagtagagaaaccggccaaggatataaatcgaat  12986300  Previous    Next  AGI:  At4g25410.1    Description:  basix helix-loop-helix (bHLH) family protein. similar to basix helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G51790.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70067.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 12985765    to: 12986693    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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