AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
---------->DOF2 <-------TEIL --------->AtLEC2 <----------DOF2 ---------->DOF2 <-----------GT1 <--------ATHB1
aatctaattactaaaacttttatcttacaaaagtgattaaagatacgtttgataaaaacctaaattataaccatgcaagctataacacaataatttcgtt	2672800
<--- <---------PCF5 --------->ALFIN1 ------>NtERF2 <------ZmHOX2a(1) ------>ZmHOX2a(1) ----------->GT1 <-----------GT1 <------NtERF2 ==========
ttgttatctccttaaccaaaaaaatagtattagtcattatgtgaaatttaattaaattagttttacttacgtaggccaccggaaggaagtggaggaccac	2672900
<---------TGA1a =================================== --------->TGA1a --------->O2 <---------O2 ------>NtERF2 <------NtERF2 ------>ZmHOX2a(2) <---------ALFIN1 ------>NtERF2 <--- <----------DOF2 ------->TEIL ===============MYC_MYB <------- ------ALFIN1 <----------DOF2 ------->GAMYB ----------->HVH21 <--- =============HOX2a_HOX2a =============================================bZIP_DOF ------>NtERF2
caactttgatcggaatagcttcggcgaaaacagctttaacgaatgaaccaccggctaaaccagccgccacgagtccaatcactgaccggcgactactttc	2673000
----------->HVH21 ===bZIP_DOF <----------CDC5 ------------AtSPL8 ======== ---DOF2 ----------->RAV1(2) ------->GAMYB ------>ZmHOX2a(2) ------------AtSPL3 -------->P <---------AGP1
tggtactgacacgttctgctgagccctgatcacaagtccggttctctgagacccaaccgagactcttgagatgttcaaacggtttgagccgttgatctgt	2673100
----------->RAV1(2) <--------ATHB1 <------ZmHOX2a(1)<---------ALFIN1 <----------DOF2 =================HOX2a_HOX2a --------->O2 <-----------HVH21 <-----------GT1 <-
aaacttccttcaaggacagcctgagatgctccacgtaagccagccatcgaagtcactgcttgagccattttttttttatctgctttgaataattgattag	2673200
----------->GT1 *TSS --------->ALFIN1 ---------->DOF2 <-------- ----------------------TaNAC69(2) ----------->HVH21 ----------->GT1
tgaagtgttgagttataatttttggtgtttggttatgtgacaaagaataccttatctgattcacgttgttacttagattactcggatatggttttaacta	2673300
--------- <-------- ========= ----------->TGA1 ----------->HVH21 <---------O2 ========= --------->O2 ---------- --------->TGA1a ---------->DOF2 --------->ALFIN1 =======================bZIP_DOF --------->ALFIN1 <---------TGA1a --------->O2 <------ZmHOX2a(1) =================================== <---------TGA1a ===============HOX2a_HOX2a ====================== <---------O2 ----------->RAV1(1)>>>>>>>>>TAC1 ====================== ---GT1 --------->TGA1a <-----------GT1 <------ZmHOX2a(2) <-----------HVH21 <--------
ctaatatgttgacacgtggtttcttgattctcagttttgccacataggattgagatcgagtgttcccagaatgcgattgtcacgtggctgaatgacgtgg	2673400
<-----------------AG >>>>>>>>>>WRKY26 >>>>>>>>>>WRKY38 >>>>>>>>>>WRKY43 <-----------GT1 >O2 -O2 ----------------->AGL1 ===================================bZIP_DOF ===================MYC_MYB ->STF1 =bZIP_DOF ===================MYC_MYB =bZIP_bZIP <-------GAMYB ---------->DOF2 ----------->GT1 -TGA1a ----------->GT1 <-----------ARR10
aaattgaccaattcggttaaacctagtcaaagttaattgaaaaccggtttcgataatatctaagcaaattgtaacttaaatccaatccaacttgacaaat	2673500
<----------ID1 ----------->GT1 <---------------AtSPL8 <------NtERF2 ---------->DOF2 ----------->GT1 ----------->GT1 ----------->GT1 ---------->ID1 <---------------AtSPL8 -
aaatgaaatcccttattgttaaaaaaaagtacaaattgaaaaatagataattttggcctcaatttcaattttggattttgtacatagccattaagaataa	2673600
<------ZmHOX2a(1) <<<<<<<<<MYB98 <<<<<<<<<<WRKY43 <-------GAMYB <<<<<<<<<<WRKY26 ==================================HOX2a_HOX2a <<<<<<<<<<WRKY38 ------>ZmHOX2a(2) <--------P ---------->GT1 ---------->DOF2 <---------ALFIN1 --------->ALFIN1 <-----------GT1
tttggtcaattcaatctattaaagtttatatgatccacatttttaatttcgggtgggttaggaataatagtcacttattcacgaattcaaatacctaatc	2673700

AGI:	At4g05180.1
Description:	PSBQ/PSBQ-2/PSII-Q (PHOTOSYSTEM II SUBUNIT Q-2); calcium ion binding. Identical to Oxygen-evolving enhancer protein 3-2, chloroplast precursor (PSBQ2) [Arabidopsis Thaliana] (GB:Q41932;GB:Q9M0X7); similar to PSBQ/PSBQ-1/PSBQA, calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G21280.1); similar to oxygen-evolving enhancer protein 3-2 [Brassica rapa] (GB:BAF81515.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbQ; (InterPro:IPR008797)
Range:	from: 2671820	to: 2673241	Orientation: Reverse
Links:	TAIR MIPS

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