Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Publications Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                    <                                                                                               <-----                                 <----------DOF2                                               <-----                            <----------DOF2                                                   -------                         ---------->ID1                                                      <-------                        <-----------GT1  <---------ALFIN1                   <----------DOF2  --------   caacgcttgtctaatcatcttctgtttctccttttcttttgccacacgccttagagtttgcagtttcttctcttccttctttgtcaatttaaaaggttgg  21045000 ------MYB46 ------MYB83 -MYB46 -MYB83 -->ALFIN1                            <-------GAMYB -P                                  <-----------RAV1(1) ->ALFIN1                 <----------DOF2         ------->GAMYB   ggaggtttaagaatattctgaaaaacatctttcttgtgtttgttgttgttaaccatcaatgtactaagattaatcacatgcccatactcatctatttctc  21045100                                                       ------->TEIL          ----------->GT1                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         ------>ZmHOX2a(1)                      ---------->DOF2            ------->GAMYB       ----------->RAV1(2)<----------DOF2     <-------TEIL----------->GT1              ----------->RAV1(1)------>NtERF2    <-----------GT1   ttccaagtacatctacacgcagaaaaaagcccttggtctgtttatgtgcaacagccgtatctattgccagctcctgaaatcgtttaacagcttcaaggat  21045200                                                                                                  <--                                                                                                 ----                                                      ------>MYB83                          ------>ZmHOX2a(1)                         <----------ID1               ------>MYB46                          =========            <-----------HVH21            <----------DOF2  <-------TEIL    <<<<<<<ZML2 ---------->ID1   ttgactagaagtagtgtccgatgcaatagaacaagtatacggccttttctcaaacctagctacatcttcaaacctagaactcttgtttgtcgtcctagcc  21045300                                                                                         <-----------HVH21                            ------>ZmHOX2a(1)                                           =============                  =================HOX2a_HOX2a                                          ------>ZmHOX2a(2) <---------ALFIN1 ------>ZmHOX2a(2)                                                    ============== ----NtERF2 ------>ZmHOX2a(1)                                         =========================HOX2a_HOX2a -->NtERF2  =============HOX2a_HOX2a                                  ========================HOX2a_HOX2a ========================HOX2a_HOX2a                                  ------>ZmHOX2a(1)<------ZmHOX2a(2)   gccccattctcttcctctgatctatctttcctcttacttccttcgtgagacctctcatgatgatgcttagtcctatctctctcatcacgatcgtcacgga  21045400                 <----------DOF2         <-----------ARR10   ------>ZmHOX2a(1) ----------->RAV1(2) =========HOX2a_HOX2a                                                  ---------->DOF2     <--------- =========HOX2a_HOX2a              <----------ID1              ------->TEIL      ---------->DOF2   tgctcctggaatatctctgcttcttgttatccatgatgagacaaatttaggggaagtatgaaacgaacgtgaacaaagaaacacaaaggtattttaccta  21045500                   ------------>CBF                  ------>ZmHOX2a(2)   <------ZmHOX2a(1)                  ===========================HOX2a_HOX2a                                    <--------     ------------>CBF        --------------->AGL15                                     <----------DOF2 --GT1  <------------CBF     ------->GAMYB <----------DOF2<----------DOF2     <------------CBF   tattcacatcaattgaatgatcccaattcaaccacgaataggaaactttatgccgttttcctttttcttaaacgaccacgaattggaaacttttatgtcg  21045600                                     ---------->ID1                      <-----------GT1                                    <-----------GT1           ------>MYB83                         <---------ALFIN1                     ------>MYB46                       <---------ALFIN1 <----------DOF2  <------ZmHOX2a(1)                    <------ ---RAV1(1)   -------->HAHB4<---------ALFIN1     <------------CBF   <---------AtLEC2   ------------>CBF   gtttctatttttttaatgatacacaccacaccacgttttgacctttttagtcattgataggacctaatttgcatttcacaaaaccatgatacaatgcttt  21045700                                                               ----------->RAV1(1)                                                              <----------ID1                                                       ------------------------>ANAC81 ----DOF2                              ----------->GT1<------ZmHOX2a(1)        <----------DOF2   actagagagacaccattaataaaaaaccgcgaactagaccaaggttacaaattacaggagcaagacaacaaaaaaacaagacttttgaaaatgttcagac  21045800                <----------ID1                ----------->GT1            ---------->DOF2   gcaaaatagagcataaaagggataaaacattcgcgtcttaaacaagcagaaaacatacctcgagtcccatgaataaaaattatagaacataacataagaa  21045900  Previous    Next  AGI:  At3g56790.1    Description:  RNA splicing factor-related. similar to RNA splicing factor-related [Arabidopsis thaliana] (TAIR:AT3G55930.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ55201.1); contains InterPro domain Pre-mRNA-splicing factor 3 (InterPro:IPR013881) Range:  from: 21044814    to: 21045434    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g56800.1    Description:  CAM3 (CALMODULIN 3); calcium ion binding. Identical to Calmodulin-2/3/5 (CAM5) [Arabidopsis Thaliana] (GB:P25069); similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G41110.1); similar to CAM5 (CALMODULIN 5), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to CAM5 (CALMODULIN 5), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.1); similar to calmodulin 4 [Daucus carota] (GB:AAQ63461.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 21045516    to: 21047056    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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