AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<------NtERF2 ----------->RAV1(1) --------->PCF2 <------------ATHB5 ---------->DOF2 <-------TEIL -------->ATHB1 <-
aaccaaagtgtttctaataaacttggccgtgcattgaaccacggagttccaaaatcaatgtctgtttaaatcattggccccagaatttgaactacacaca	19325200
<-------TEIL ----------HVH21 <-------GAMYB ----------->GT1
gagtcacagacattcattacgatggttgaatgaaatggtcttgactaagaagtaagaacaactatgcacaattgagaaactattagctcgatttccagaa	19325300
------>ZmHOX2a(2) <------ZmHOX2a(1) ---------->DOF2 ----------->GT1 <-----------RAV1(2) ---------->DOF2 ----------->GT1
actatcactatcgtaatataaaagtcccaggatcgaccaaatcggacgagaaagactcaatgaagaaaccccataaaaacatggtcgaagtcagtataaa	19325400
<- xxx xxxx ----------->HVH21 --------->ALFIN1 <-------GAMYB <------ZmHOX2a(1) ---------->CDC5 xxxxx <------NtERF2 <------ZmHOX2a(1) <-----------RAV1(2) <----
caaaatcaagagtttggtcgtcgttgtggatttggaggagaggagagtgagcttacagagtatgagaagcgagaagctcaggggaagtgtgactcgtcgt	19325500
----------->GT1 ------>ZmHOX2a(2) -----NtERF2 ====================================HOX2a_HOX2a xxxxxxxxxxxxx>smallRNA(i) <------ZmHOX2a(2) <----------DOF2 xxxxxxxxxxxx>smallRNA(i) =====================================HOX2a_HOX2a xxxxxxxxxxx>smallRNA(i) --------->AGP1 ---------->DOF2 --NtERF2 <---------AGP1 *TSS <------ZmHOX2a(1) --
cgtcgtcttcgaagtcactcacgaccatcgagagatctgatgattttggtaaaatatcaaaaaaggacttcaacttttcacttaagtcaaaacaagcccc	19325600
<-----------RAV1(1) ----------->GT1 <----------DOF2 ----------->GT1 --------->TBP <-------TEIL <------ZmHOX2a(1) <-----------GT1
tataaataaattctgttatttaagccttgaggcttgagctgcgtctttgttgttcactaggagagttatttgagcggataatttactaaaactgaatgtc	19325700
---------->DOF2 <-----------GT1 ---------->DOF2 ----------->GT1 <-------
catctcccaaacaaacattttacgttttcatgttatataaaagaatactatatcgttagctagaatattgtagttaaatattaaagtagtgtattttaca	19325800
<----------DOF2 <------ZmHOX2a(2) ---------->ID1 ---------->DOF2 ----GT1 <----------DOF2 ----------->GT1 ----------->GT1 ------>ZmHOX2a(2)
ttttgtctgaactttgtcatctttgtttcatgaatggtcaatggtgaataatggggagagaaggaacgtgaataaagggatccacaagtgtctccaccat	19325900
----------->GT1 ----------->GT1 < ---------->DOF2 ---------->DOF2 = ------>ZmHOX2a(1) ----------->GT1 <----------ID1 ====== <----------DOF2 <------------CBF ---------->DOF2 ------
tttctgagtaaaaacaatcacatcctttcattttcaaacccctaaaccaaattgtaaagtcagaaaaaaagaaaaaaagaaacacacatacaaatcgaaa	19326000
---------->DOF2 *TSS ------------>CBF --------->TGA1a ===================bZIP_DOF --------->O2 <---------O2 ----------DOF2 <---------TGA1a =========================bZIP_DOF =========================bZIP_DOF <---- ---->DOF2 <---------ALFIN1 <-----------------AGL1 ---------->DOF2 ----------->RAV1(1)
agcttttcttcatctcccacgttacaataagccctaagaacgaataaggcaactacagagagaaaagatgaattcaactacaacaaaaaacgtttgtgga	19326100

AGI:	At3g52072.1
Description:	other RNA
Range:	from: 19323662	to: 19325555	Orientation: Reverse
Links:	TAIR MIPS

AGI:	At3g52080.1
Description:	CHX28 (cation/hydrogen exchanger 28); monovalent cation:proton antiporter. similar to ATCHX15 (cation/hydrogen exchanger 15), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT2G13620.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40816.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153)
Range:	from: 19326021	to: 19328821	Orientation: Forward
Links:	TAIR MIPS

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