Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            ------>ZmHOX2a(2)         <------ZmHOX2a(2)         --------->CCA1(2)        --------->ARR11(3)        --------->ARR14(2)        <---------ARR14(2)        <---------AGP1        <---------ARR11(3)              --------->MYB46(3)        --------->AGP1                ----------->RAV1(1)        --------->ZAT18     --------->HSFB2a(2)           --------->ANAC46              <---------DEAR3(1)     <---------HSFB2a(2)           --------->ANAC58             --------->ALFIN1  --------->GLK1(2)                --------->ANAC58          --------->DAG2 ->At4g35610                     ---------->DOF2            ---------->DOF2     ----------->GT1   aacgattctagatctgatttcataagacccagcgattaagcaacaacgaggtttagataaacaaaagtgggcgaaattagaagagataaacacacagaga  8100400                                                                                                  <--                                                                                                 <---                                                                                                 ----                                 --------->DAG2                                                  ----                                ---------->DOF2                                                  ----                            --------->ANAC58                                                     <---                            <----------ID1                                                       <---                            --------->ANAC58                                                   ------                     --------->CCA1(2)                                                 --------->At4g35610                    <---------ARR11(3)          ---------->DOF2                      --------->YAB1                    --------->ARR11(3)      --------->YAB1                           <---------ICU4--                    --------->ARR14(2)      ----------->GT1                       --------->WOX13(1)                    <---------ARR14(2)    --------->GLK1(2)        <---------CCA1(2)<---------ATHB12   cgattccaaaacagatgatgaagatttgaaacgaaaaagtgaagaatcgtaaaagttgaaaacgaattcaaatcttacatttgtcaatcatctcaaatag  8100500                                      ----------->RAV1(2)                                   <-------TEIL                                --------->At4g35610          <---------YAB1        <---------At4g35610                                        <------ZmHOX2a(2) ----ZmHOX2a(2)                 <---------ZAT2                                            --------->ARR11(3) ------ARR11(3)                 --------->ZAT2                           ----------->RAV1(1)  ------- ----->ARR11(3)               ------->GAMYB            --------->At4g35610                <---------ARR11(3) ----->ARR14(2)           <---------WRKY12 <---------ANAC58         --------->LBD16       --------->ARR14(2) ----->AGP1             --------->ANAC46   <---------ANAC58        --------->ANAC46      <------ZmHOX2a(1) ------ARR14(2)       --------->ANAC58<---------At4g35610       --------->ARR14(2)   <------ZmHOX2a(2) ------AGP1<---------ICU4 <---------WRKY38(1)  <---------CCA1(2)<---------ARR14(2)  --------->ARR11(3) ----->ARR10          --------->ANAC58--------->At4g35610       ------->TEIL        <---------ARR14(2) ---->ZmHOX2a(2)   <---------REM1(2) ------->TEIL      <---------At4g35610     --------->MYB52(1)   atcttcgtcttcatcattttcttcacgctcaacgagctgcatctggctcgtttcttcagctctatgaatccgaaacaacacaaacagatcaggatcatcg  8100600                                    --------->ANAC46                                  --------->ANAC58                                  --------->ANAC58                                 --------->ZAT18                                 <-------TEIL                              --------->At4g35610                                           ---------                             <---------------AtSPL8                                       --------->GLK1(2)                             --------->MYB59                --------->AtMYB61         >>>>>>>>>TBF1       --------->AHL20(2)   <-----------RAV1(2)      --------->TOE1(3)          >>>>>>>>>TBF1 -->At4g35610             <-----------HVH21      ---------->DOF2    <---------YAB1 >>>>>>>>>TBF1   gaaaacaaaataaaaacgagaagaagcgagtcaggtacacaaaacttaagacaaagcttaaaccaaaacgatgaatggagaagaagaagaagaatcgtag  8100700                                         <--------HAHB4                 --------->WOX13(1)      <---------ICU4               <------ZmHOX2a(2)        <---------ATHB12              --------->ARR11(3)        --------->ICU4             <---------ZAT2    ---------->DOF2<---------ATHB12--------->ANAC58          <-----------ARR10 >YAB1        <---------ARR11(3)   --------->ANAC58 <----------DOF2--------->ZAT2         <---------GLK1(2)   tagagagaaagagagagatcaatcacttacttaagagaagccatcattttctcgctctaagagtctctaagcttggaagagtgagagagatagaattttg  8100800                                                                   <------------CBF                                                               <---------ANAC55(2)                                                               --------->ANAC58                                                               --------->ANAC55(2)                                                               --------->ANAC58                                                              <---------LBD16                                                            --------->ARR14(2)                                                           <-----------HVH21                                                           <-------GAMYB                                                          <------NtERF2                                                         --------->LBD16                                                         <---------MYB46(3)                              <---------ANAC58          <---------ANAC46                           *TSS                         <---------ANAC58                <---------ICU4<---------ANAC58    <---------AHL20(2)                      <-------GAMYB              <-----------ARR10            <---------TOE1(3)<---------ARR14(2)     <---------YAB1              --------->GLK1(2)            <---------TOE2(3)<---------SPL7 <---------ANAC58  --------              --------->ARR11(3)        <-------TEIL    <---------ANAC58   <---------ANAC58<---------MYB52(1)              <---------ARR11(3)    <---------TOE1(2)  <---------LBD16 ---------->DOF2   <---------ANAC46   aaattcgaaatttgaaaatctttgctcgatttgcttcgagggttcaaggtttttaatggcgggttacggaattgaaagcgtgattctaattccgttgatt  8100900                                                                                          --------->ICU4                                                                                      <-----------HVH21                                                                                     --------->O2                                                                                     <---------O2                ------->GAMYB                                                        <---------ANAC55(2)              --------->At4g35610                                                    --------->ANAC55(2)              <---------At4g35610                                                    --------->TGA1a           --------->LBD16                                                           --------->ANAC46          --------->ANAC58                                                           --------->ANAC58          --------->ANAC58           <---------ZAT14                                 --------->ANAC58          <---------HSFB2a(2)        <---------ZAT18                                 <---------bZIP60(1)          --------->HSFB2a(2)        --------->ZAT18                                 --------->bZIP60(2)          --------->ANAC46         --------->ZAT18                                   --------->bZIP60(1)          <---------ANAC55(2)      <---------ZAT18                                   <---------TGA1a          --------->ANAC55(2)     <---------ANAC58                                  <-----------STF1       --------->ARR14(2)         <---------ANAC58                            ---------->DOF2       <---------ARR14(2)     <---------MYB52(1)                              =================bZIP_DOF     <---------ANAC58       <---------ANAC58                             <------NtERF2<-----------TGA1     <---------ANAC58  <------------------------ANAC81     <----------DOF2    <---------ICU4    <---- ->ATHB12<---------LBD16    <---------ANAC58<----------DOF2====================================bZIP_DOF   tgaatttgggttccgcaactgaatttgttttcgtttgtgtgctcttctttgttatacatgactttgtttgatggctgcgataatgccacgtcatagttat  8101000                                                                                                    <                                                                                                   <x                                                                                                <xxxx                                                                                               <-----                                                                                              <xxxxxx                                                                                             xxxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                            xxxxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                         <xxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx               <---------WRKY38(1)                                                     <xxxxxxxxxxxxx              --------->WRKY18(1)                                                     <xxxxxxxxxxxxxx             --------->At5g28300                                                      <xxxxxxxxxxxxxx        --------->ETT(2)                                                              <xxxxxxxxxxxxxx        <---------ETT(2)  --------->GLK1(2)       <-----------GT1<----------DOF2     <xxxxxxxxxxxxxxx -----YAB1  ----------->GT1            ---------->DOF2           <---------DAG2 <xxxxxxxxxxxxxxxxxxxx   catccgtctatcgacggtcaatagaaggaatctaggtgaaaaaaagagaatattacactcttaaacacttttttaaaactatttctgtgtttaggcactt  8101100             <----------DOF2             <---------DAG2          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       --------->MYB59     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) -----DOF2<xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxsmallRNA(l2) xxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxsmallRNA(si3) xxxxxxxxxxxxsmallRNA(le3)                                           <-------MYC3 xxxxxxxxxxxxsmallRNA(fl3)                                           ------->MYC3 xxxxxxxxxxxxxsmallRNA(si3)                                      --------->TOE2(2) xxxxxxxxxxxxxsmallRNA(le3)                                      ------->GAMYB xxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxsmallRNA(le3)                                  --------->YAB1 xxxxxxxxxxx>smallRNA(si3)                                 --------->TOE2(3) xxxxxxxxxxxxsmallRNA(l2)                                  --------->TOE1(3) xxxxxxxxxxxxsmallRNA(si3)                                <---------YAB1 xxxxxxxxxxsmallRNA(le3)                                 <---------ARR11(3) xxxxxxxxxxxxsmallRNA(le3)                               --------->ARR11(3) xxxxxxxxxxxsmallRNA(le3)                           <---------AHL20(2) xxxxxxxxxxxxsmallRNA(le3)                          --------->AHL20(2) xxxxxxxxxxsmallRNA(si3)            <-----------GT1 <---------AHL20(1) xxxxxxxxsmallRNA(le3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <----------DOF2 xxxxxxxxsmallRNA(i2)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<---------TOE1(2) xxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------TOE2(2)             <--- xxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------ALFIN1   <xxxxxxxxxxxxxxx xxxsmallRNA(le3)           <-----------GT1         --------->AHL20(1)    <-----------GT1        <---   tcaaaagattaggcacttttttatgtttttttactaaaataccctcttaactaaaatattatcttaacccacgttttctctctttctctctctctcttca  8101200                                                                                            <<<<<<<<<TBF1                                           <-----------GT1                               <xxxxxxxxxxx                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <<<<<<<<<TBF1                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <xxxxxxxxxxxx     <----------DOF2            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <---------HSFB2a(1) ------CCA1(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               <---------HSFC1(2) xxxxxxxxsmallRNA(se3)     <---------At4g35610                                     --------->HSFB2a(1) ------At4g35610           <---------CCA1(2)                                       --------->HSFC1(2)   tctctctctttctctctctctctctcttcatctctctctctctcttcacctctctctctcttcatctttgtaaaaaatgagaagaaacttcttcttcttc  8101300  Previous    Next  AGI:  At3g22880.1    Description:  ATDMC1 (RECA-LIKE GENE); ATP binding / DNA-dependent ATPase/ damaged DNA binding. Identical to Meiotic recombination protein DMC1 homolog (LIM15) [Arabidopsis Thaliana] (GB:Q39009;GB:P93001;GB:Q4V3A9;GB:Q9LIL0); similar to ATRAD51 (Arabidopsis thaliana Ras Associated with Diabetes protein 51), damaged DNA binding [Arabidopsis thaliana] (TAIR:AT5G20850.1); similar to Meiotic recombination protein DMC1 homolog (GB:Q96449); contains InterPro domain Meiotic recombinase Dmc1; (InterPro:IPR011940); contains InterPro domain DNA repair Rad51/transcription factor NusA, alpha-helical; (InterPro:IPR010995); contains InterPro domain AAA+ ATPase, core; (I Range:  from: 8097694    to: 8100827    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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