Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <---------ZAT14                                                                           <---------SPL7                                                                         --------------->AtSPL3                                                                 <---------ARR14(2)                                                                 <---------ZAT14                                                  --------->ARR11(3)    <------------------SPL14                                                  --------->ARR14(2)    --------->SPL7                                                  <---------ARR11(3)   ------>MYB46(1)                                          ---------->DOF2   --------->At4g35610     <-----------RAV1(1)                 --------->YAB1   <-----------RAV1(2)     --------->ALFIN1                   <---------ATHB12 --------->At4g35610   ----------->HVH21   --------->ZAT2                     --------->WOX13(1) <---------ZAT2--------->MYB52(1)   --------->At4g35610        ---------->DOF2     <---------ARR14(2)   ------>MYB83  --------->GLK1(2)         <---------MYB52(2)   <---------CCA1(2)  --------->ANAC46               -- --MYB46(3)       --------->TOE2(3)--------->ANAC58      <---------At4g35610 --------->SPL7        -- -AtMYB61         --------->TOE1(3)--------->ANAC58 ------>ZmHOX2a(2)<---------MYB59              ---   gaagaagctgtggctaaaaaccatagcacaactaaagaagcaatcaaagttggatcttcagcaggtgtataccgaaccgtactgacacattttagccaga  5512900              <---------MYB52(1)             --------->LBD16                                                             <-------MYC3            --------->LBD16                                                              ------->MYC3           <---------LBD16                                                               <-------MYC2          ------>ZmHOX2a(2)                                                              ------->MYC4         <------ZmHOX2a(2)                                                          <-----------GT1        <---------ARR11(3)                                                        --------->GLK1(1)        --------->ARR11(3)                                                       <---------ARR14(2)        <---------ARR14(2)                                                       --------->ARR14(2)        --------->ARR14(2)                                        <XXXXXXXXXXXXXXXXXXXXMIR779.1    ---------->DOF2                                              ----------->GT1<------NtERF2 --------->ANAC58                                    <----------DOF2          <---------ANAC46 --------->ANAC58    <---------TOE2(3)             <---------ANAC58           <---------ANAC58 ------->GLK1(1)  <---------WOX13(1)               <---------ANAC58      <---------ICU4  ------->MYC2 ------->CCA1(2)--------->ATHB12             <-------TEIL      <---------YAB1 <---------ANAC58 ------>ARR14(2)<---------MYB46(3)          --------->AtLEC2<---------YAB1   <---------LBD16     XXXX   gatacccaaagatcccggtgattgacgaatcacatatgcacaatacatgcattgcctttgatatgatgagtataaacatggcggatttacatgtgcttcc  5513000                                                                                              -------                                                                                        <---------ANAC58                                                                                        <---------ANAC58        --------->TOE2(3)                            >>>>>>>>>TBF1                      --------->ANAC46        <---------MYB59                           >>>>>>>>>TBF1            <---------YAB1 -----------     <-----------GT1                   <---------MYB46(3)  >>>>>>>>>TBF1 --------->YAB1 <---------ANAC55(1) <---------ARR11(3)  ================================================================================ --------->ARR11(3)  <---------------AGL15     >>>>>>>>>TBF1            --------->ICU4  --------->ANAC55(2) XXXXXXXXXXXXXXXX>MIR1886.3           --------->ALFIN1  >>>>>>>>>TBF1   <---------YAB1  <---------ANAC55(2)   aaagattttaccttacttcaaaactctattcagaaaccaagtggttgaagaagaagaagaagaagaagagactgatgatgatagcttaatacgtgacaaa  5513100                                               ---------->ID1                                     <--                                    --------->KAN4(2)                                            <---                  --------->YAB1   --------->HSFC1(2)                                          <-----      <----------DOF2              <---------HSFB2a(1)                                         ------      <---------DAG2               <---------KAN4(1)                                          <------   --------->ANAC58                <---------HSFC1(2)                                         -------   --------->ANAC58----------->GT1 --------->KAN4(1)                                     ------------ --->DOF2      --------->WOX13(1)  --------->HSFB2a(1)                               --------->YAB1 >HVH21     --------------->AGL15 <---------KAN4(2)                                  --------->AHL20(2) ===========================MADS_MADS     <---------MYB52(1)                <----------DOF2   <------   gtcccaagctttttcatcaattagtatatagattagaatgttctgttttgtcccctgtttttgactgtgttgtattgtctttagaaataatatcaattta  5513200         ------>ZmHOX2a(1) -------WOX13(1)                             <-------TEIL ---------CBF                              <-------MYC3 ----AHL20(2)                 <---------AHL20(2) --->AHL20(2)                 --------->AHL20(2) ---AHL20(1)                 --------->AHL20(2)                 ---------->DOF2*TSS     <----------DOF2 -->AHL20(2)     ----------->HVH21     <-------TEIL       ----------->GT1    --------->AHL20(2) >CBF<-----------GT1     <------ZmHOX2a(1) ------->MYC3 <------------CBF--------->AHL20(2) ---AHL20(2)   --------->ALFIN1--------->WOX13(1)  ----------->GT1      <---------AHL20(2)         <-   attgatttttcctgtgagtgtgacagaggaaataaatcagtttcatgtgcataatgtgaattgtgaaaaagaaattaaaaaaaatcggaactttgggaaa  5513300                                         -------->ZAP1                                        <---------At5g28300          --------->DEAR3(1)      <---------YAB1         --------->ANAC58        <----------DOF2                      ------->TEIL         --------->ANAC58      ------>ZmHOX2a(1)                      --------->ARR14(2)    --------->ANAC58     --------->AtMYB61 --------->At4g35610        --------->GLK1(2)    --------->ANAC58    --------->MYB46(3) <---------At4g35610        <---------ARR14(2)  ---------->DOF2  --------->ANAC46    <-----------GT1          --------->TOE1(2) <------ZmHOX2a(1) --------->ANAC58    <---------WRKY18(1) <-----------HVH21                     <--- --------TOE2(3)   --------->ANAC58--------->ATHB12 <----------DOF2--------->ANAC46 <-----------GT1   taaggaaagacaccgaagaacacacaaccattcctctttattgaccgcttccttctttctctgtcacatacgaatcggtgagtttttttcttctcaattt  5513400                                                                                              -------                     <---------TOE1(2)                                                        <------MYB46(1)                     <---------TOE2(2)                                                      <--------                   <---------TOE1(1)               --------->ATHB12                       <---------MYB46(3)             --------->GLK1(1)                    <---------YAB1                          --------->ATHB12        --------->At4g35610                ----------->HVH21                             --------->WRKY38(1)        <---------ZAT2                    <----------DOF2                            --------->LBD16        <---------At4g35610  --------->ATHB12     --------->ICU4                     ------>NtERF2  <---------MYB52(1)--------->LBD16 --------->ARR14(2)                             <---------LBD16 --------GT1 <---------GLK1(1)      <---------ARR14(2)  <-----------RAV1(1)   <-----------GT1 <------MYB83   ctccgttctctgctgatttctccgaggttattgattcgattccgcttgacgcatgattgtgttgtctcaagggtctaattttacctccgcgttgattggt  5513500                                     <---------ANAC46                             <----------DOF2                            ------>ZmHOX2a(2)                      --------->YAB1 <------MYB46(1)                      <---------MYB52(1)                      ------>ZmHOX2a(2)                                ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                                 ==============================                    <---------ARR14(2)          --------->At4g35610  <---------ARR14(2)                ------>ZmHOX2a(2)    <------MYB83                    --------->ARR14(2)               <------ZmHOX2a(2)     ----------->GT1                <------ZmHOX2a(1)              --------->ARR14(2)    --------->MYB111(2)     <---------At4g35610                    <-         >>>>>>>>>SARD1   --------->ARR11(3)    <---------At4g35610 ==========================HOX2a_HOX2a   ----------->GT1  --------->ARR14(2)          <---------ZAT2  ---------->DOF2        ------>ZmHOX2a(2) ---->GT1>>>>>>>>>CBP60g  <---------ARR11(3)    --------->ZAT2<----------DOF2          ============== -WOX13(1)    <---------ARR14(2)    --------->MYB46(2)      --------->At4g35610   <---------WOX13(1)   ttataggggaaatttggatcccgatcgtgatctttagtttggtgaatttgagctggaattggagcttaaaggatcggttttttgactgatctaattgttt  5513600               ---------->DOF2            --------->YAB1         <----------DOF2    ------>ZmHOX2a(2)  --------->GLK1(2)                                             <---------YAB1  --------->ARR14(2)                                          ----------->GT1  <---------ARR14(2)                                      --------->DAG2           <---------MYB46(3) <------ZmHOX2a(1)                                       ---------->DOF2          <--------P =======HOX2a_HOX2a        <----------DOF2           --------->ANAC58            <-------GAMYB     -- --------TOE2(3)--------->DAG2     <----------DOF2   --------->ANAC58          <---------TOE2(3)----- =======HOX2a_HOX2a <---------MYB46(3)             <------ZmHOX2a(1)           <---------TOE1(3)<----   tgaggatcggtctttcataaagttgttgtctttgaagcttttttgactggtgaggacgaaaaagttgtgattttgggaattagggttgttttgtttcgaa  5513700                                                                     --------->At4g35610                                                                    ----------->HVH21                                                                <---------ANAC46                                                                <---------ANAC58                                                                <---------ANAC55(1)                       <---------ANAC46                         --------->ANAC55(2)                     --------->At4g35610                        <---------ANAC58            ---------                     <---------ZAT2                 <---------WOX13(1)                 ----------->RAV1(2)                     <---------At4g35610         <---------YAB1 <---------ANAC55(2)   ------>NtERF2                     --------->ZAT2           --------->LBD16--------->ARR14(2)      <---------ANAC58             --------->ZAT2                  <------NtERF2   <---------ARR14(2)      <---------ANAC58        --------->CCA1(2)                   <---------LBD16 <-----------HVH21 ---------->DOF2       <---------ARR14(2)                   <------NtERF2<-------TEIL<---------At4g35610    <--------       --------->ARR14(2)      --------->YAB1<---------ANAC46<---------MYB52(1)      <---------ANAC46 ------->ANAC46  <------ZmHOX2a(1)       <-----------HVH21  <-------GAMYB  <------ZmHOX2a(1)--------- ---->ARR14(2)<-----------RAV1(2)      <---------AtMYB61------------>MYB.PH3(1)      <---------RAP2.6(2) -----ARR14(2)<XXXXXXXXXXXXXXXXXXXXMIR396A--------->ALFIN1<---------ANAC46<----------ID1    <--------   ttcgccatggatacgagcaggagagctgtggaatcgtattggaggtcgcggatgatagatgcggttacgtctgatgaggacaaagttgcgcctgtgtaca  5513800  Previous    Next  AGI:  At3g16260.1    Description:  catalytic. similar to metallo-beta-lactamase family protein [Arabidopsis thaliana] (TAIR:AT1G52160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45858.1); similar to hypothetical protein OsJ_000975 [Oryza sativa (japonica cultivar-group)] (GB:EAZ11150.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70334.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) Range:  from: 5509380    to: 5513210    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g16270.1    Description:  binding. Identical to VHS domain-containing protein At3g16270 [Arabidopsis Thaliana] (GB:Q9C5H4;GB:O04329;GB:Q9LU19); similar to unnamed protein product [Vitis vinifera] (GB:CAO45857.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70334.1); contains InterPro domain ENTH/VHS (InterPro:IPR008942); contains InterPro domain VHS; (InterPro:IPR002014) Range:  from: 5513279    to: 5516938    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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