AthaMap

For complete usage of AthaMap please enable JavaScript in the settings of your browser!

Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<-----------GT1 >ZmHOX2a(2) <-----------GT1 -------->P ----------->RAV1(1) -----
tattcaatcttaagatatttcacgaatcaatcagataacattcgaaaaccactcagctaccataagtaataaaacaacagtgattaaaccgattctctta	3607900
------>ZmHOX2a(2) <------ZmHOX2a(2) ------->GAMYB -------->P ===================HOX2a_HOX2a ------>ZmHOX2a(1) -------->P <-------GAMYB --->P ====================HOX2a_HOX2a ------>NtERF2 ------>NtERF2 <---------ALFIN1 -------
ccagaaactgagctcctagtaaccccgatccgttggtcggaagctgctccggctattacttgccgcgcgagcttccctccaacctacggcggttgagaaa	3608000
<---------------AGL15 <------ZmHOX2a(1) --------------->AGL15 <----------DOF2 <------NtERF2 ----------->GT1 <------NtERF2 ----------------->AGL1 --->DOF2 ----------->GT1 <------------CBF ------>NtERF2 <------ZmHOX2a(1)
gatgatgaagaagagaaggtttaatctggtttattgaggaaatagcggcggcaacgatttccagatggaggaaagtatctgagaagaagaaatggtctat	3608100
<-----------GT1 <-----------GT1 <----------DOF2
cacagattaatacccgtttggttttacgtataactctattcccccaaattttcggattactttgggctacaggcccatactatttgggccttattctcat	3608200
<------ <------NtERF2 ------>NtERF2 <-----------HVH21 --------->O2 <---------O2 < <---------------AtSPL3 ------>NtERF2 <----------DOF2 ------>NtERF2 -- <-----------GT1 ------>ZmHOX2a(2) <-----------ARR10 --
aaaaattagaactatgcgttttaacccaaacaagtcataatcagcgcgggagaccatgatcgtcgttacaagctttgtacggaactccgccgtcgctgcg	3608300
------>NtERF2 ---ABI4(1) <-------TEIL ------NtERF2 ------->TEIL <-----------HVH21 ------->ABI4(2)<---------------AtSPL3 <----------DOF2 ---->NtERF2 --------->AtLEC2 ------->TEIL <-----------GT1
gtggcttcgacgccatggaacgtacgtttgagagagctcgcatatcagtcattgttttctgaatctatatctctttaccggtcaatgctccgttctggtt	3608400
------ ----------->HVH21 ================ <---------TGA1a --------->TGA1a --------->O2 ================ <---------O2 <- ================ ----------->RAV1(1) -------- <----------DOF2 ------>NtERF2 ================ ------>NtERF2 <-----------HVH21 <-------TEIL --------- ------>NtERF2 <----------DOF2 ------>NtERF2 <------------OsbHLH66 ----------->HVH21 <----------DOF2 ===============================================bZIP_DOF
cttctcccgacgcgttctctttccctttcattctcaagtcttgtgcttccctttcgctccctgtctccggccaacagctacattgccacgtgaccaaagg	3608500
------>AtMYB77 ======MYC_MYB ==bZIP_DOF ------GAMYB =======MYC_MYB ========================= -->DOF2 ------->TEIL ==bZIP_DOF ----------->GT1 <-------TEIL <- ->DOF2 ------>ZmHOX2a(2) <-------GAMYB ---------->DOF2 -----
cggttgcgagactgagccgtttgtactaacggctctgatctcaatgtattgtaaatgcggtttggttgcagatgcacgtaaagtgttcgaagaaaatcct	3608600
--------->TGA1a =====================================bZIP_DOF ============bZIP_DOF ----------HVH21 <----------DOF2 ->ZmHOX2a(1) <-----------GT1 <-------TEIL <-----------HVH21
cagtcaagtcagcttagtgtttgttacaatgctttgatatctgggtacacagcaaactcgaaggtcactgatgctgcgtatatgtttcgtagaatgaagg	3608700
----------->GT1 >>>>>>>>>GATA-1 >>>>>>>>>GATA-4 ------>ZmHOX2a(1) >>>>>>>>>GATA-3 ------->TEIL <---------- >>>>>>>>>GATA-2 ----------------------->TaNAC69(2) <--------ZAP1
aaactggtgtgtctgtggattcagttacaatgcttgggcttgtcccgctatgcacggttcctgaatacctctggcttgggaggtctcttcacggtcaatg	3608800

AGI:	At3g11460.1
Description:	pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G30700.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15895.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:	from: 3608256	to: 3610127	Orientation: Forward
Links:	TAIR MIPS

printer-friendly version