Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->TOE2(3)                                                   ------->TEIL                                                  <---------ARR11(3)                                                  --------->ARR14(2)                                                  <---------ARR14(2)                                                  <---------GLK1(2)                                                --------->ANAC58    <---------At4g35610                                            --------->ANAC46        --------->At4g35610                                          --------->ANAC58        <---------DEAR3(1)         -------- <---------TOE2(3)                        --------->ANAC46        <---------RAP2.6(2)      <---------WOX13(1) ------ZAT14                --------->CCA1(2)   --------->ANAC58 --------->RAP2.6(3)     --------->ATHB12 --->ZAT18          <---------ANAC46      --------->ANAC58     --------->ETT(2)         <-------TEIL --->ZAT14       <----------DOF2       --------->ARR14(2)     <--------P        <----------DOF2 ----ZAT14   <---------GLK1(2)         <---------ARR14(2)<---------At4g35610  <XXXXXXXXXXXXXXXXXXXXMIR419   actgaggttgaaacagcttcttttgtggagataagagacagaatacgcccaagaacctcatctggtagacggctgattacatctttagcattcattgata  17798300            --------->AtMYB61    --------->TOE2(3)                                                   <----------DOF2    --------->TOE1(3)              --------->At5g28300          --------->ARR11(3)     ---------->DOF2 ->YAB1---------->DOF2            ----------->GT1               <---------ARR11(3)  --------->AtLEC2-   ccaaaaccttaaaaccacagcaattggattcagaaacagtaactagacagagttgatgagttcaaaggtctgttctttttcatacaatgcaaagtctaat  17798400                                                              --------->ZAT14                                                              <---------At4g35610                        --------->YAB1                        --------->At4g35610             ------->TEIL           --------->TOE2(3)   --------->MYB52(1)            <---------CCA1(2)      <---------YAB1    --------->ANAC58          --------->ANAC55(2) --------->ATHB12       --------->ANAC46             --------->DAG2          <---------ANAC55(2) --------->YAB1         --------->ANAC58            ---------->DOF2       <---------YAB1  <---------ATHB12           <----------ID1           <---------ANAC58 --------->DOF2      --------->WOX13(1)         ---------->DOF2            <---------ANAC58   acaaaagttatcatgtatctcttcaatcacattgattaccatagaaatgaaaaagacgaaacagagcagacaacataccttgctaaagtgctacttgcta  17798500                                                 ----------->GT1                <---------ALFIN1               ---------->DOF2           <---------ARR11(3)               <------ZmHOX2a(2)           --------->ARR11(3)             --------->At4g35610       ---------->DOF2           <---------AHL20(2)   <---------ANAC58             <---------AHL20(2)   <---------ANAC58             --------->AHL20(2)                         --------->HSFB2a(2)   <---------ANAC46<----------DOF2    --------->TOE1(2)                    <---------HSFB2a(2) <-----  <-----------------------TaNAC69(2) --------->YAB1                  <---------TOE2(3)        -------   cagagtcgtgaaagctctccactttcaataccaatttaatcgtgagatcaaaagtgaaaacatcgaatactagggttttggaaagtttaagagaagagac  17798600                                                         --------->DAG2                                                        ---------->DOF2                                                <------ZmHOX2a(1)                                        --------------->AGL15                                        <---------------AGL15                                       ----------------->AGL1                                       <-----------------AG                                       <-----------------AGL1                                       <-----------------AGL2                      <--------P                      --------->ANAC58 ----------------->AGL2                      ==================                      --------->ANAC46 ----------------->AGL3                    ----------->GT1    -                      --------->ANAC58 ----------------->AG*TSS                 --------->DAG2      =                  --------->YAB1       <-----------------AGL3  ---------->DOF2======================= ------------------TaNAC69(2)          ============================================================== -->CCA1(2)      <---------YAB1 ------>ZmHOX2a(1)---------->DOF2              ---------->DOF2 <------   gaagaaactgaaacaacttattataagcaatttcctccatttccacatgaggaaagagtaaagcagaaagactgatgaagaaaaggtaagtagtctgttt  17798700                      <---------ANAC58                      <---------ANAC46            <-------MYC3           <---------ANAC55(2)           <---------bZIP60(1)           <---------ANAC58           ==============================bZIP_DOF           <---------ANAC58           <---------ANAC46           --------->ANAC55(2)           <---------TGA1a           --------->TGA1a          ----------->GT1           <---------O2           <---------TOE2(3)           --------->O2           <---------TOE1(3)         ------------->DYT1 <-----------------AGL1       <-----------HVH21   <---------PCF2    ---------->DOF2   <---------ANAC58    =================bZIP_DOF <----------DOF2 ====================MYC_MYB----------------->AGL1                 <----------DOF2 --------->DOF2       --------->ALFIN1                       <------NtERF2    <------ZmHOX2a(1) ====================bZIP_DOF<---------------AGL15 <---------AHL20(2)       <---------TOE2(2) ====================bZIP_DOF--------------->AGL15 --------->AHL20(2)       <---------TOE2(3) ============================================MADS_MADS     <---------DEAR3(1)<---------YAB1      ---- ---MYB52(1)------->MYC3--------->ALFIN1     <-----------HVH21  <---------MYB52(1)               <---   gggaaagaaagtcacgtgagagaagcgtgggcctttaagggtaaaactgtcatttaaatagtcgccgttctttacacttaggattagggcttctaacatt  17798800                                             <---------ICU4                                            <---------YAB1                                            --------->ICU4                                       <---------At4g35610                                       ----------->GT1                                      <---------MYB46(3)                                      <---------DEAR3(1)                                     --------->SPL7                                     <---------ORA47(1)                                   ------>NtERF2                                   <---------SPL7                                   <---------DEAR3(2)                                  <---------DEAR3(1)          <---------ANAC58       --------->ATERF1(1)       <---------MYB52(1)       <-----------HVH21     --------->ANAC58      *TSS<---------ANAC58     --------->ANAC46       -------->P                                 ---- ----->AHL20(2)           <----------DOF2 --------->YAB1------->GAMYB----------->GT1           <----- ------AHL20(2)    <---------CCA1(2)<------NtERF2     --------->ANAC58 <--------P--------->ARR11(3)   taaatagtcgtttcgttctccgtctctcctttcccgtcggccggtgataatttcgcaacccaaattccaaatggtaagtttcagttcttggatttgtatg  17798900                                                      <------NtERF2                               <--                                                    <---------ANAC46                              ---                                                    <---------DEAR3(1)                           ----                                   <----------DOF2 <------NtERF2                            <--------                            <-----------GT1        --------->ATERF1(1)                      ---------                            <---------AHL20(2)    <-----------HVH21           <---------------AtSPL8                         --------->ARR11(3)      <---------ANAC58           <---------ATHB12---------      ----------->GT1    <---------ARR11(3)      <---------ANAC58      --------->ANAC58     <-------- ----->ARR11(3)          <---------ARR14(2)      <---------DEAR3(1)    <-----------------AGL1  <----- ----YAB1                --------->ARR14(2)  <-----------RAV1(2)       --------->ANAC58---------->DOF2   attttgtaatgtgaatagggatttgaagatttacttacttttgaaattcaggcgtcggagaagaagctatcgaacccaatgagggacattaaagtgcaga  17799000                                   =================================HOX2a_HOX2a                                   ====================================HOX2a_HOX2a                                  <------ZmHOX2a(2)                                  =====================================HOX2a_HOX2a                                  ==================================HOX2a_HOX2a                                 --------->ARR14(2)                            --------->ALFIN1             --------->ARR14(2)                    <------MYB46(1)------>ZmHOX2a(2)     <---------ARR14(2) -------ZAT2        <---------MYB46(3)                 <---------HSFB2a(1) ------>ZAT2        <------MYB83 --------->ARR11(3)    --------->HSFB2a(1) ----->GLK1(2)     <---------AtMYB61          --------->ARR14(2)        <-----------GT1 -ZAT14            <---------MYB46(3)         <---------ARR14(2)------>ZmHOX2a(1) >ZAT18           <---------MYB52(1)      ----------->RAV1(2)------>ZmHOX2a(1) >ZAT14    <---------ARR11(3)    <---------ARR11(3)    --------->HSFC1(2) -ZAT18    --------->ARR11(3)    <---------ARR14(2)    <---------HSFC1(2)         <-----------RAV1(1) ----At4g35610   <-------GAMYB  <---------GLK1(1)     <---------TOE1(2)<-----------GT1     <---------   agctggttctcaacatctccgttggtgagagtggagatcgtctcaccagagcctccaaggttcctcctgttttttacccattctctgtggttttcactct  17799100                                         <------MYB46(1)                                         <------MYB83                                        --------->MYB59                                        <---------TOE2(2)                                        --------->MYB111(1)                                        <---------TOE1(2)                                  <---------ANAC58                                  <---------ANAC58                                 --------->MYB52(2)                                               ===                          <---------ANAC46                   <-----------HVH21                    ---                          <---------ANAC58    <---------HSFB2a(2)                                 <--                      --------->ATHB12 <---------MYB55(1)<---------ANAC46                  <---------RVE1(1)             <---------YAB1  <---------MYB46(3)          <---------ANAC58                 <---------GLK1(2)     <---------O2   <---------WOX13(1) <--------P        <---------ANAC58                 --------->ARR11(3) <-----------HVH21--------->ATHB12<---------ANAC46      --------->ATHB12                  <---------ARR11(3) --GT1  ----------->GT1   <---------ANAC58    --------->HSFB2a(2)      ------>ZmHOX2a(1)----------->ARR10   tgttgtcacttggttataatcgattgattcgtggttacttggtaggttttggaacaattgagtggtcagactcctgttttctccaaaggttagatttttt  17799200  Previous    Next  AGI:  At2g42730.1    Description:  F-box family protein. Identical to F-box/LRR-repeat protein At2g42730 [Arabidopsis Thaliana] (GB:Q0WR05;GB:Q9SJI3); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G42720.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41526.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Transcription elongation factor S-II, central region; (InterPro:IPR003618); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type; (InterPro:IPR003617); contains InterPro domain FBD-like (Inte Range:  from: 17794531    to: 17798659    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g42740.1    Description:  RPL16A (ribosomal protein large subunit 16A); structural constituent of ribosome. Identical to 60S ribosomal protein L11-1 (RPL11A) [Arabidopsis Thaliana] (GB:P42795;GB:Q9SJI2); similar to 60S ribosomal protein L11 (RPL11B) [Arabidopsis thaliana] (TAIR:AT3G58700.1); similar to 60S ribosomal protein L11 (RPL11D) [Arabidopsis thaliana] (TAIR:AT5G45775.2); similar to RPL16B (ribosomal protein L16B), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G18730.1); similar to unknown [Picea sitchensis] (GB:ABK22492.1); contains InterPro domain Ribosomal protein L5; (InterPro:IPR002132) Range:  from: 17798806    to: 17800159    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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