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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                          ---------->DOF2
                                                                   <---------ANAC58
                      >>>>>>>>>GATA-2                      --------------->AGL15
                      >>>>>>>>>GATA-1                      <---------------AGL15
                      >>>>>>>>>GATA-4           --------->LBD16    <---------ANAC46
               <---------ZAT14                <---------LBD16      <---------ANAC58
      <---------AHL20(2)       --------->ARR14(2)         <-----------------AG
     <---------AHL20(1)        <---------ARR14(2)         ----------------->AGL3
  --------->YAB1      >>>>>>>>>GATA-3   ------>NtERF2     <-----------------AGL2
 
ggtaatcatatatttgtgtccagtggattgaacaaatatgctcggcccatgcggaagtaatgccaattttgggtgagtaaagcccatgcgaaattttcac  15785900
                                                <---------ICU4
                                                --------->ATHB12
                                                --------->YAB1
                                    <---------ANAC58 <---------ANAC58
                                    <---------ANAC58 <---------ANAC58
           <---------DAG2------->GAMYB         <---------YAB1                                     <-
           <----------DOF2          <---------AtLEC2 <---------ANAC46                   <---------AHL20(2)
     <-------TEIL       --------->ANAC46 <----------DOF2                           <---------ARR11(3)
 
ataagaaatgcatgctttttgttttcaacgacatgagttgcatgctttttatcattgcttatatagttgcaagtttgcaactccttgatattttttttat  15786000
                                  <---------YAB1                       <---------AHL20(2)
                       <---------AtMYB61                   <---------AHL20(2)
             --------->AtMYB61   --------->KAN4(2)        --------->AHL20(2)
          --------->AtMYB61  --------->At4g35610          <---------AHL20(2)
         --------->MYB46(3)  <---------At4g35610      --------->AHL20(2)   <-----------GT1
--------ETT(2)      <----------DOF2            ----------->GT1     ----------->GT1
 
gtagacactactaccaccaaaaacttttggtctgcttattcttgtttactatgtaaaaaaaataaatgaattgtttatttactccgatttgatggagtct  15786100
                                             --------->AHL20(1)
                                             --------->ARR11(3)
                                             <---------AHL20(1)
                                             <---------ARR11(3)
                                           <---------ARR11(3)
                                           --------->ARR11(3)            <---------MYB52(1)
                                           --------->AHL20(1)  ----------->GT1
                 <----------DOF2           <---------AHL20(1) ----------->GT1           <-----------
     ----------->GT1                      --------->YAB1   ---------->DOF2            <---------YAB1
    <---------TOE2(3)            ----------->GT1       --------->YAB1   <-----------HVH21       <---
 
ggtttatgaggttttatagcctttacagaaaattgatagttacaaaaatatttttcaaaaataaaagggtaaaaccgtcatttcaagttgttattgtttt  15786200
               --------->AHL20(2)
      --------->ARR14(2)    --------->LBD16        *TSS                            ------>ZmHOX2a(1)
-CBF  <---------ARR14(2)  <---------LBD16 <---------At4g35610                <-----------GT1
------LBD16   ----------->GT1             --------->At4g35610      <---------MYB52(1)              -
 
gggggactggatttgaaatgaaatatagaaccggaaaacaaggtgagccgaagtcgaagcctttggacccgtttttatatttactcctcccattcccttc  15786300
                             <<<<<<<<<TBF1
                     ------>ZmHOX2a(1)
                    <---------ALFIN1                 --------->ANAC46
                  ------>ZmHOX2a(1)                  --------->ANAC58           <----------DOF2
               ------>ZmHOX2a(1)<<<<<<<<<TBF1        --------->ANAC58           <---------DAG2>>>>>>
       ------>ZmHOX2a(1)<------------------------ANAC81--------->MYB46(3) --------->ZAT6 ------>ZmHOX2a(1)
----->ZmHOX2a(1) <---------ALFIN1         <----------DOF2         <----------DOF2    <-----------GT1
 
tccttcaatccttccttcctcctcctcccttcttcttcttcccctctttcattttccagccactacaaacttttctatctctactttttttcctctcgat  15786400
                                                  <---------ANAC46
                                                  <---------ANAC55(2)
                                                  <---------ANAC55(1)
                                                  <---------ANAC58
                                                  <---------YAB1
                                         --------->ANAC46
                                         --------->ANAC58
                                         --------->ANAC58
                                       --------->ANAC58             --------->LBD16
     <---------DAG2                    --------->ANAC58            --------->ANAC58
     <----------DOF2    <---------YAB1 <---------ALFIN1            --------->ANAC46               --
   <-------TEIL  <---------MYB52(1)    --------->ANAC46            --------->ANAC58       <---------ARR14(2)
 <---------MYB52(1) --------------------->WRI1    <---------ANAC58<---------LBD16         --------->ARR14(2)
>>>>GATA-1       <----------DOF2     --------->ANAC46            ------>ZmHOX2a(2)       <---------MYB52(1)
 
ttcaggtactttttgagaccctttgttgtgattttcgaacacacaccccaattacgtttgatttttgatcccgcatcgatttcaattcatccgtttctga  15786500
                 <---------ANAC58
         ------>ZmHOX2a(2)              <---------MYB52(1)                 <-----------GT1
       --------->ARR14(2)    <----------DOF2                          <---------ICU4
       <---------AGP1 <---------At4g35610                        <---------TOE1(2)
       --------->ARR11(3)   <---------ICU4                    <---------ANAC46
       <---------ARR14(2) --------->GLK1(2)   <-----------GT1 <---------ANAC58                     -
 <----------DOF2 <---------ANAC58     <-----------RAV1(1)     <---------ANAC58                    --
------->GLK1(2)  <---------ANAC46    ------>ZmHOX2a(2)<-----------GT1<-------TEIL            <------
 
gtttcttttggatctgggtgtcttgagctaatcttttcgatctgttgtttatcgattttactcatgcgtatgttcattacaccatttgttatttgtttaa  15786600
                                                                                     <---------ARR11(3)
                                                                                     --------->ARR11(3)
                                                                                     <---------ARR14(2)
                                                                                     --------->ARR14(2)
                                                                                    <---------GLK1(1)
                                                                                    <---------KAN4(1)
                                                                                    --------->GLK1(1)
                                                                                   ---------->TaMYB80
                                                                                --------->LBD16
                                                                               --------->HSFB2a(2)
                                                                               <---------HSFB2a(2)
                                                                     <---------GLK1(2)
                                                                   <---------YAB1  <---------KAN4(2)
                                  <---------AHL20(2)           <-----------GT1==================HOX2a_HOX2a
                                  --------->AHL20(2)           <---------AHL20(2) <---------GLK1(2)
                                  <---------YAB1           --------->ICU4     ------>ZmHOX2a(2)
                                 --------->AHL20(1)       <---------AHL20(2) ===================HOX2a_HOX2a
   ---------->DOF2               <---------AHL20(2)       <---------AHL20(1) <------ZmHOX2a(2)
 ------->GAMYB                   --------->AHL20(2)     <---------YAB1      <---------ARR14(2)
 --------->AtMYB61               <---------AHL20(1)  <---------AHL20(2)  --------->HSFB2a(2)
--------->MYB46(3)              --------->YAB1      --------->AHL20(2)   <---------HSFB2a(2) <<<<<<<
------->P                  <----------DOF2    <---------WOX13(1) --------->ANAC55(2)--------->KAN4(1)
------->WOX13(1)        --------->ARR11(3)  --------->ATHB12<---------ICU4  --------->ARR14(2)  <<<<
---AHL20(2)             <---------ARR11(3) <---------YAB1--------->YAB1 <---------LBD16  ------>ZmHOX2a(1)
 
tcaaccaaaagactcatgtttttcaaatgtctttaatataatttttctgattgaattttataatatttacatgattctggatccagaatatccttcttct  15786700
                                                ------->TEIL
                                                --------->ARR14(2)
                                                <---------ARR14(2)           <---------MYB46(3)
                                      <---------KAN4(1)               ----------->GT1           <---
                 --------->ATHB12     --------->KAN4(1)            =================================
                --------->ICU4     <------ZmHOX2a(1)     ----------->GT1<---------YAB1         -----
<<TBF1  ---------->ID1   <----------DOF2   <----------DOF2     ---------->DOF2               <------
<<<<<TBF1  ------>ZmHOX2a(1)   ---------->DOF2 <---------CCA1(2)   <------ZmHOX2a(1)         -------
 
tcttccattttgtcctgtattgatttgtctttgaaaaaggattgttctttgtatctgtattggtgaaaaaggattgttatttgttgataaaaatttgatc  15786800
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AGI:  At2g37620.1   
Description:  ACT1 (ACTIN 1); structural constituent of cytoskeleton. Identical to Actin-1/3 (ACT3) [Arabidopsis Thaliana] (GB:P10671;GB:P53493;GB:Q9M351); similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G53750.1); similar to ACT11 (ACTIN-11), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G12110.1); similar to ACT12 (ACTIN-12), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G46520.1); similar to actin [Striga asiatica] (GB:AAC49651.1); similar to Actin (GB:O81221); similar to actin [Striga asiatica] (GB:AAC49652.1); contains InterPro domain Actin/actin-like;
Range:  from: 15786252    to: 15788639    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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