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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                          <---------ALFIN1
              <---------YAB1           --------->AtMYB61     <-----------GT1         <---------ALFIN1
         ------>ZmHOX2a(1)          --------->AtMYB61     <---------GLK1(1)       --------->WOX13(1)
------>ARR14(2)      ---------->DOF2<---------ALFIN1     --------->ARR11(3)      <-------TEIL
-------ARR14(2)  <---------YAB1  --------->ANAC46        <---------ARR11(3)  <---------ATHB12
 
gaaccaaaactcctaatatgatgagaaagcctttcaacaccacctccactcttctctatagatatcaccttcacattccaaacatccatcaccttcacat  15029900
                                                                          --------->ANAC46
                                                                          --------->ANAC58
                                                                          --------->ANAC58
                                                                        --------->ZAT6
                                                                     ===============================
                                                                     ===============================
                           --------->ATHB12                     <---------ZAT2            <---------HSFC1(2)
                <---------TOE2(3)                              ------>MYB83         <------------CBF
               --------->YAB1                                  ------>MYB46(1)<---------GLK1(2)
            --------->TOE2(3)<---------WOX13(1)    <------------CBF  ------>ZmHOX2a(1)    --------->HSFC1(2)
   --------->TOE1(3)   ------->TEIL          --------->ANAC46  --------->ANAC58   <---------YAB1   -
   --------->TOE2(3) --------->YAB1    <---------AtLEC2        --------->ANAC58--------->GLK1(2)  <-
 
ttgaaaccttgaatacattaacaatgaaactgattggagtttgcatagacacaacattgttagaccaagctcctaacacgagattctaattgaagtttcc  15030000
                                                                                                 ---
                                                                                       --------->O2
                                                                                       <---------TGA1a
     >>>>>>>>>RAP2.2                                                                   =============
     --------->TOE2(3)                                 <---------YAB1                  <---------ANAC46
     --------->YAB1    <---------GLK1(1)               --------->ICU4                  ----------->GT1
------------>CBF    --------->ANAC58                 --------->YAB1                    <---------O2
=====HOX2a_HOX2a--------->ANAC58                    <---------YAB1                     <---------ANAC55(2)
======HOX2a_HOX2a   --------->ANAC58              --------->YAB1                      <-------------
----->ZmHOX2a(2)--------->ANAC58 --------->AHL20(2) --------->ICU4                ---------->DOF2---
-----ZmHOX2a(2) --------->ANAC46 ------------>CBF--------->ICU4  ------------>CBF ===============bZIP_DOF
 
gatctcaatctaaattcacaagtaagaaaccccaaattcaatatgcgaatgaatgatgatgatttttcttcaattcccaaaactaaaaagacgtgaaaaa  15030100
                                                    ----------->GT1
                                                   --------->ANAC58
                                                   --------->ANAC58
                                                   --------->ANAC46
                                                --------->ZAT14
                                                <---------ZAT14
                                                <---------SPL7
                                               --------->ALFIN1
                                              <---------------AtSPL8
                                              <---------------AtSPL3
                                             <---------ANAC46
                                             <---------ANAC58                     <---------ANAC58
                                             <---------ANAC58                     <---------ANAC58
                                   --------->DAG2 <---------LBD16    ------>ZmHOX2a(2)
                            ---------->DOF2<------MYB46(1) -------->ATHB1   <---------ANAC58
          ---------->DOF2 --------->ANAC46 <------MYB83    --------->ATHB12 <---------ANAC58
------>TOE1(3)            --------->ANAC58<---------AtMYB61<---------ICU4<----------DOF2
=====================bZIP_DOF     ---------->DOF2 --------->SPL7   --------->ARR14(2)
----------TaNAC69(2)      --------->ANAC58<---------MYB46(3)       <---------ARR14(2)
------>TOE2(3)        --------->CCA1(2)--------->ATHB12   <---------YAB1 ===========================
 
ccctaacaagtccgaaagttagaagaaacacgaaagagaaagcgattggtgtgtacggaaaatcattggggatcgtctttcttgggcttgcgatagttct  15030200
      <---------ANAC58
      <---------ANAC58
   ------->PIF5
   ------->MYC2
   ------->MYC3
   ------->MYC4                         --------->HSFB2a(2)
   <-------MYC2               <---------MYB46(3)
   ------->PIF4               <------MYB46(1)
   <-------MYC3               <------MYB83
   <-------MYC4           --------->ALFIN1 --------->ARR14(2)
   <-------PIF5          <---------MYB52(1)<---------ARR14(2)
   <-------PIF4------>NtERF2<--------P  <---------ANAC46                     --------->ANAC58
  --------->O2--------->DEAR3(1)       <---------LBD16                       --------->ANAC58
  ===================================MYC_MYB                                 --------->ANAC46
  <---------TGA1a      <---------DEAR3(1)--------->LBD16                  --------->ZAT14
  <---------O2----------->HVH21    --------->At4g35610                    --------->ZAT18
  --------->TGA1a<---------O2<---------AtMYB61       --------->HSFB2a(1)  <---------ZAT18
<------------OsbHLH66 <---------ORA47(1)<---------HSFB2a(2)     <---------ANAC58
--------------------->WRI1<-----------RAV1(1)        <---------HSFB2a(1)  <-------TEIL            <-
<---------ALFIN1 <---------bZIP60(2)  --------->MYB52(1)        <---------ANAC58               <----
============bZIP_DOF ------>NtERF2 <---------At4g35610       <---------AGP1<---------ALFIN1------>ZmHOX2a(2)
 
cttccacgtgcttagcgacgacgaggccggtgttggtgagcttccggatattgggaacgttgtagttctgtgccaagtacaccccaaaaactgatcccgt  15030300
                       <-----------GT1
                     --------->KAN4(2)                                                          ----
                    <----------TaMYB80                                                         -----
                    <---------KAN4(1)                                                          -----
           <---------HSFC1(2)                                                                  -----
           --------->HSFC1(2)                                                                 <-----
           --------->At4g35610                                                               ------>ZmHOX2a(1)
           <---------At4g35610                                                              <-------
---------->DOF2     --------->KAN4(1)      <----------DOF2                                ------>ZmHOX2a(1)
--------YAB1<---------GLK1(2)  ------>ZmHOX2a(1)                                     <---------GLK1(1)
-----MYB52(1) --------->At4g35610   ------>ZmHOX2a(2)                                --------->GLK1(1)
 
tatgaaagagaagcagcttctgaatattcccatcctcgatctctctctttctctctctgtctctgtctctgtctctctgcaacttcagaactcctcctcc  15030400
                                                                       <---------MYB52(1)
                                                                     <---------ANAC46
                                                                    <------NtERF2
                                                                   ------>NtERF2
                                                                  <---------DEAR3(1)
                                                                  --------->DEAR3(1)
                                                                <---------ATERF1(1)
                                                               ----------->HVH21
                                                          <---------ARR11(3)
          <---------WRKY12                                <---------ARR14(2)                      --
----->LBD16              ---------->DOF2                  --------->ARR14(2)                  <-----
---->ANAC58      ------->GAMYB                 <---------AHL20(2)--------->ATERF1(1) <---------WOX13(1)
---->ANAC58   ----------->RAV1(1)     <---------LBD16     --------->ARR11(3)        <------------CBF
---->ANAC46  --------->MYB46(3)  <---------ARR14(2)     <---------HSFB2a(1)        --------->ATHB12-
----LBD16 <---------WRKY38(1)    <---------GLK1(2)      --------->HSFB2a(1)       <---------YAB1  <-
--ALFIN1 --------->WRKY18(1)     --------->ARR14(2)     ----------->ARR10    <---------ZAT18  ------
 
gcaagttttcaggtcaacaacagagacagaaagacgaattctcagggtttttatttgggaagttctgcgacgccgtttagtactcttgattgggcttata  15030500
      --------->YAB1           --------->YAB1
      <---------ICU4          <---------YAB1
     <---------YAB1          <---------AHL20(1)
     --------->ICU4          --------->AHL20(1)
   --------->YAB1            <---------AHL20(2)
  <---------AHL20(2)         --------->AHL20(2)
------->AHL20(2)            --------->YAB1
----YAB1                   <---------YAB1
-------->AHL20(2)       --------->AHL20(2)                                            --------->TOE2(3)
--------AHL20(2)      <----------DOF2             <---------At4g35610           --------->ANAC46
--->AHL20(2)       ------>NtERF2     <------------CBF   <<<<<<<<<TBF1          --------->LBD16
 
aataaataataataactaatgaggccttttattataatagaattgcattttgtagcttcttcttctcagaactcagaaattccccaaaacataaatactt  15030600
                                     *TSS                          --------->ARR14(1)
                                   <---------YAB1                  --------->GLK1(2)
                               <---------GLK1(2)                   <XXXXXXXXXXXXXXXXXXXXMIR3440B-3P
                               --------->ARR14(2)                 <---------GLK1(2)
                               <---------ARR14(2)                 --------->ARR11(3)
                            <---------ANAC58                      <---------ARR14(2)
                            <---------ANAC46                      --------->ARR14(2)
                            <---------ANAC58                      <---------ARR11(3)
              --------->MYB52(1)--------->GLK1(2)       <----------DOF2
          ----------------->AG<------NtERF2     <----------DOF2 <---------YAB1
 <----------DOF2           <---------LBD16  ---------->ID1      ----------->ARR10                  <
 
ctctctttctcttaccaaaacggcgaaaatggcggattctgatttttgtctctttttttctttgatgaagattctcttgatcaattcatggctatcgaaa  15030700
             --------->ARR11(3)                   <----------DOF2                               <---
             --------->ARR14(2)                  <---------ANAC58                              <----
             --------->GLK1(2)                   <---------ANAC58                              -----
             <---------ARR14(2)            <---------AHL20(2)                                -------
            --------->RVE1(1)              <---------YAB1                        <---------ANAC46
         --------->YAB1                  <---------ICU4                          <---------ANAC58
---------GLK1(2)                        --------->ICU4    <-----------GT1        <---------ANAC58
 
ctgattctgccataaaaatctggacaggtctctctcagttctaatttttattgctttgtttttgccattccatttgatgagattgtgtgtgtgtttggcg  15030800
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AGI:  At2g35733.1   
Description:  unknown protein
Range:  from: 15029755    to: 15029946    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g35736.1   
Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G25225.1); similar to unknown [Picea sitchensis] (GB:ABK20880.1)
Range:  from: 15030163    to: 15030333    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At2g35738.1   
Description:  other RNA
Range:  from: 15030638    to: 15032544    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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