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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ALFIN1
<---------
YAB1
--------->
AtMYB61
<-----------
GT1
<---------
ALFIN1
------>
ZmHOX2a(1)
--------->
AtMYB61
<---------
GLK1(1)
--------->
WOX13(1)
------>
ARR14(2)
---------->
DOF2
<---------
ALFIN1
--------->
ARR11(3)
<-------
TEIL
-------
ARR14(2)
<---------
YAB1
--------->
ANAC46
<---------
ARR11(3)
<---------
ATHB12
gaaccaaaactcctaatatgatgagaaagcctttcaacaccacctccactcttctctatagatatcaccttcacattccaaacatccatcaccttcacat
15029900
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
--------->
ZAT6
===============================
===============================
--------->
ATHB12
<---------
ZAT2
<---------
HSFC1(2)
<---------
TOE2(3)
------>
MYB83
<------------
CBF
--------->
YAB1
------>
MYB46(1)
<---------
GLK1(2)
--------->
TOE2(3)
<---------
WOX13(1)
<------------
CBF
------>
ZmHOX2a(1)
--------->
HSFC1(2)
--------->
TOE1(3)
------->
TEIL
--------->
ANAC46
--------->
ANAC58
<---------
YAB1
-
--------->
TOE2(3)
--------->
YAB1
<---------
AtLEC2
--------->
ANAC58
--------->
GLK1(2)
<-
ttgaaaccttgaatacattaacaatgaaactgattggagtttgcat
agacacaacattgttagaccaagctcctaacacgagattctaattgaagtttcc
15030000
---
--------->
O2
<---------
TGA1a
>>>>>>>>>
RAP2.2
=============
--------->
TOE2(3)
<---------
YAB1
<---------
ANAC46
--------->
YAB1
<---------
GLK1(1)
--------->
ICU4
----------->
GT1
------------>
CBF
--------->
ANAC58
--------->
YAB1
<---------
O2
=====
HOX2a_HOX2a
--------->
ANAC58
<---------
YAB1
<---------
ANAC55(2)
======
HOX2a_HOX2a
--------->
ANAC58
--------->
YAB1
<-------------
----->
ZmHOX2a(2)
--------->
ANAC58
--------->
AHL20(2)
--------->
ICU4
---------->
DOF2
---
-----
ZmHOX2a(2)
--------->
ANAC46
------------>
CBF
--------->
ICU4
------------>
CBF
===============
bZIP_DOF
gatctcaatctaaattcacaagtaagaaaccccaaattcaatatgcgaatgaatgatgatgatttttcttcaattcccaaaactaaaaagacgtgaaaaa
15030100
----------->
GT1
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
--------->
ZAT14
<---------
ZAT14
<---------
SPL7
--------->
ALFIN1
<---------------
AtSPL8
<---------------
AtSPL3
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
<---------
ANAC58
<---------
ANAC58
--------->
DAG2
<---------
LBD16
------>
ZmHOX2a(2)
---------->
DOF2
<------
MYB46(1)
-------->
ATHB1
<---------
ANAC58
---------->
DOF2
--------->
ANAC46
<------
MYB83
--------->
ATHB12
<---------
ANAC58
------>
TOE1(3)
--------->
ANAC58
<---------
AtMYB61
<---------
ICU4
<----------
DOF2
=====================
bZIP_DOF
---------->
DOF2
--------->
SPL7
--------->
ARR14(2)
----------
TaNAC69(2)
--------->
ANAC58
<---------
MYB46(3)
<---------
ARR14(2)
------>
TOE2(3)
--------->
CCA1(2)
--------->
ATHB12
<---------
YAB1
===========================
ccctaacaagtccgaaagttagaagaaacacgaaagagaaagcgattggtgtgtacggaaaa
tcattggggatcgtctttcttgggcttgcgatagttct
15030200
<---------
ANAC58
<---------
ANAC58
------->
PIF5
------->
MYC2
------->
MYC3
------->
MYC4
--------->
HSFB2a(2)
<-------
MYC2
<---------
MYB46(3)
------->
PIF4
<------
MYB46(1)
<-------
MYC3
<------
MYB83
<-------
MYC4
--------->
ALFIN1
--------->
ARR14(2)
<-------
PIF5
<---------
MYB52(1)
<---------
ARR14(2)
<-------
PIF4
------>
NtERF2
<--------
P
<---------
ANAC46
--------->
ANAC58
--------->
O2
--------->
DEAR3(1)
<---------
LBD16
--------->
ANAC58
===================================
MYC_MYB
--------->
ANAC46
<---------
TGA1a
<---------
DEAR3(1)
--------->
LBD16
--------->
ZAT14
<---------
O2
----------->
HVH21
--------->
At4g35610
--------->
ZAT18
--------->
TGA1a
<---------
O2
<---------
AtMYB61
--------->
HSFB2a(1)
<---------
ZAT18
<------------
OsbHLH66
<---------
ORA47(1)
<---------
HSFB2a(2)
<---------
ANAC58
--------------------->
WRI1
<-----------
RAV1(1)
<---------
HSFB2a(1)
<-------
TEIL
<-
<---------
ALFIN1
<---------
bZIP60(2)
--------->
MYB52(1)
<---------
ANAC58
<----
============
bZIP_DOF
------>
NtERF2
<---------
At4g35610
<---------
AGP1
<---------
ALFIN1
------>
ZmHOX2a(2)
cttccacgtgcttagcgacgacgaggccggtgttggtgagcttccggatattgggaacgttgtagttctgtgccaagtacaccccaaaaactgatcccgt
15030300
<-----------
GT1
--------->
KAN4(2)
----
<----------
TaMYB80
-----
<---------
KAN4(1)
-----
<---------
HSFC1(2)
-----
--------->
HSFC1(2)
<-----
--------->
At4g35610
------>
ZmHOX2a(1)
<---------
At4g35610
<-------
---------->
DOF2
--------->
KAN4(1)
<----------
DOF2
------>
ZmHOX2a(1)
--------
YAB1
<---------
GLK1(2)
------>
ZmHOX2a(1)
<---------
GLK1(1)
-----
MYB52(1)
--------->
At4g35610
------>
ZmHOX2a(2)
--------->
GLK1(1)
tatgaaagagaagcagcttctgaatattcccat
cctcgatctctctctttctctctctgtctctgtctctgtctctctgcaacttcagaactcctcctcc
15030400
<---------
MYB52(1)
<---------
ANAC46
<------
NtERF2
------>
NtERF2
<---------
DEAR3(1)
--------->
DEAR3(1)
<---------
ATERF1(1)
----------->
HVH21
<---------
ARR11(3)
<---------
WRKY12
<---------
ARR14(2)
--
----->
LBD16
---------->
DOF2
--------->
ARR14(2)
<-----
---->
ANAC58
------->
GAMYB
<---------
AHL20(2)
--------->
ATERF1(1)
<---------
WOX13(1)
---->
ANAC58
----------->
RAV1(1)
<---------
LBD16
--------->
ARR11(3)
<------------
CBF
---->
ANAC46
--------->
MYB46(3)
<---------
ARR14(2)
<---------
HSFB2a(1)
--------->
ATHB12
-
----
LBD16
<---------
WRKY38(1)
<---------
GLK1(2)
--------->
HSFB2a(1)
<---------
YAB1
<-
--
ALFIN1
--------->
WRKY18(1)
--------->
ARR14(2)
----------->
ARR10
<---------
ZAT18
------
gcaagttttcaggtcaacaacagagacagaaagacgaattctcagggtttttatttgggaagttctgcgacgccgtttagtactcttgattgggcttata
15030500
--------->
YAB1
--------->
YAB1
<---------
ICU4
<---------
YAB1
<---------
YAB1
<---------
AHL20(1)
--------->
ICU4
--------->
AHL20(1)
--------->
YAB1
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
------->
AHL20(2)
--------->
YAB1
----
YAB1
<---------
YAB1
-------->
AHL20(2)
--------->
AHL20(2)
--------->
TOE2(3)
--------
AHL20(2)
<----------
DOF2
<---------
At4g35610
--------->
ANAC46
--->
AHL20(2)
------>
NtERF2
<------------
CBF
<<<<<<<<<
TBF1
--------->
LBD16
aataaataataataactaatgaggccttttattataatagaattgcattttgtagcttcttcttctcagaactcagaaattccccaaaacataaatactt
15030600
*
TSS
--------->
ARR14(1)
<---------
YAB1
--------->
GLK1(2)
<---------
GLK1(2)
<XXXXXXXXXXXXXXXXXXXX
MIR3440B-3P
--------->
ARR14(2)
<---------
GLK1(2)
<---------
ARR14(2)
--------->
ARR11(3)
<---------
ANAC58
<---------
ARR14(2)
<---------
ANAC46
--------->
ARR14(2)
<---------
ANAC58
<---------
ARR11(3)
--------->
MYB52(1)
--------->
GLK1(2)
<----------
DOF2
----------------->
AG
<------
NtERF2
<----------
DOF2
<---------
YAB1
<----------
DOF2
<---------
LBD16
---------->
ID1
----------->
ARR10
<
ctctctttctcttaccaaaacggcgaaaatggcggat
tctgatttttgtctctttttttctttgatgaagattctcttgatcaattcatggctatcgaaa
15030700
--------->
ARR11(3)
<----------
DOF2
<---
--------->
ARR14(2)
<---------
ANAC58
<----
--------->
GLK1(2)
<---------
ANAC58
-----
<---------
ARR14(2)
<---------
AHL20(2)
-------
--------->
RVE1(1)
<---------
YAB1
<---------
ANAC46
--------->
YAB1
<---------
ICU4
<---------
ANAC58
---------
GLK1(2)
--------->
ICU4
<-----------
GT1
<---------
ANAC58
ctgattctgccataaaaatctggacag
gtctctctcagttctaatttttattgctttgtttttgccattccatttgatgagattgtgtgtgtgtttggcg
15030800
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Next
AGI:
At2g35733.1
Description:
unknown protein
Range:
from: 15029755
to: 15029946
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At2g35736.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G25225.1); similar to unknown [Picea sitchensis] (GB:ABK20880.1)
Range:
from: 15030163
to: 15030333
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At2g35738.1
Description:
other RNA
Range:
from: 15030638
to: 15032544
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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