AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<-----------RAV1(2) ------>ZmHOX2a(1) ------>ZmHOX2a(1) <-----------GT1 -----DOF2 ------>ZmHOX2a(1) <---------ALFIN1 <----------DOF2 <------
tagatttctccttagccttctccttcttcagaattggattaagttctctaccactcctcagggagatggattgaacatactctttaccactgtagtcttt	5911700
<----------DOF2 ==================HOX2a_HOX2a ------>ZmHOX2a(2) <-----------GT1 <------ZmHOX2a(2) ----------->HVH21 <---- ------>NtERF2 <xxxxxxxxxxxxxxxx smallRNA(i) <------ <-------TEIL <------NtERF2 ------>ZmHOX2a(1) <------ ----DOF2 <-------GAMYB ===================HOX2a_HOX2a ------>NtERF2
cgggttcgtgattggtgtttagccggttattgggccgcgagagatctctctcatcctacttgtgacctcccttttcagggttctggtgtttcggcgcttc	5911800
<---------O2 ----- -------RAV1(2) --------->O2 <----- -----HVH21 <-----------GT1 <----------DOF2 ----DOF2 <-----------GT1 ---------->DOF2 <-----
aggcacaagtatgaaaaaataaaactacgcgaaatttaaacatttcgcgtggcaatgcctctcgggctgtttagcagcaaaccaaaggctttattcccgt	5911900
<------NtERF2 ------>NtERF2 <------NtERF2 <-----------GT1 ------>NtERF2 <-- ------>HVH21 <------ZmHOX2a(1) xxxxxxxxxxxxxxxx>smallRNA(s)-- ------HVH21 ----------->GT1 <-----------HVH21 ----------->RAV1(2) ------TGA1 ---------->DOF2 --------->ALFIN1 ----------->GT1 ------>ZmHOX2a(1) <-----------ARR10
cacattggcactgaaaaagggtgccctcgatgtggagcagaggaaaaatgtataaaccatcttctcttcctatgtccgccggcgagacaaatctgggcct	5912000
---------->DOF2 ------>ZmHOX2a(1) ---------HVH21 <-----------------AGL1 -------->ID1 --------------->AtSPL8 ----------------->AGL1 <------ZmHOX2a(1)
tgtcccctatcccgtcttcggagtacctcttcccccggaattctcacttctagaattttgatttcctactctggcgagggaaagaatttgatataggaga	5912100
----------->GT1 *TSS ----------->GT1 <------------MYB.PH3(1) ------->TEIL <---------AtLEC2 ----------->HVH21 <------------CBF <-------
agacattcttgagatatttccatggatactctggtatatttggaagagtcgtaaccggtttatcttcgaaaacgtgattgaatctccacaagaaacttta	5912200
====== --------->PCF5 ------ <-----------HVH21 <----- ------------>CBF <-----------RAV1(2) <----- <-----------GT1 ---------->DOF2 <xxxxxxxxxxxxxxxx smallRNA(i) ---DOF2 ---------->DOF2 ---------->DOF2 ------>ZmHOX2a(1) <-------
gattttgcaattcaagaagcaaaagtttggaaagaagcaaattcaaaggagtcagttttggagtaccctcgtcctcaggcggtccctgctaatattttcc	5912300
>>>>>>>>>>WRKY26 >>>>>>>>>>WRKY38 >>>>>>>>>>WRKY43 ==================================================================================================== ----------->AGL1 >>>>>>>>>>WRKY11 ------------AGL1 >>>>>>>>>>WRKY6 ------------AG <----------DOF2 ------>ZmHOX2a(1) ------>ZmHOX2a(1) ----GT1 ------->TEIL ----------->HVH21 <---------PCF2 <------------
ctactcggaatgttgtcagtttgatgcatcttggcacttagatgacactttgagtggacatggatgggtcctagttgaccaagataatgtccttcatttg	5912400
<---------ABI4(2) --------->ALFIN1 ---------->DOF2 ----------->HVH21 =====MADS_MADS <-----------HVH21 -----AGL3 <------NtERF2 ------>ZmHOX2a(2)
ggtctaaagagtgcgccgaagagcctatcaccattacacgctgaagttgattcgttgttatgggcaatagagtgtatgatctcgataggtgtcacggatt	5912500
<----------DOF2 ------>ZmHOX2a(2) xxxxxxxxxxxxxxxx>smallRNA(i) <-----------RAV1(1) <--------- xxxxxxxxxxxxxxxx>smallRNA(i) <----------DOF2 <----------DOF2 <----------DOF2 <-----------ARR10 -------->P xxxxxxxxxxxxxxxx>smallRNA(i)
gctctttctcatccgattgtgctgatcttatctctttactggaaaaaccttcggagtggcctacctttgttgctgaaatagcgactttcggttcttttgt	5912600

AGI:	At2g14040.1
Description:	transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.0e-99 P-value blast match to gb\|AAL06421.1\|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family)
Range:	from: 5908064	to: 5912123	Orientation: Reverse
Links:	TAIR MIPS

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