Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->MYB46(3)                                 ------>MYB46(1)                                 >>>>>>>>>>>>>>>>>LFY                                 ------>MYB83                                --------->ORA47(1)                 <---------ZAT6                 ---                              --------->DEAR3(2)        --------->ATHB12             --------->ARR14(2)         ------->PIF5    --------->ANAC46             --------->HSFB2a(2)            <---------ARR14(2)         <-------PIF5 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       ----------->GT1     --------->GLK1(2)        --------->ANAC46 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------TOE2(3)  ----------->RAV1(1) ------->YAB1      --------->GLK1(1)                  <---------HSFB2a(2)      <----------ID1   -----   atcgtaatccacgtccaagaggtttccaagagaccgaccaatgtgagaaatgacttctcgattgaggtagtgaaatggaatgccacaaatctgaatccaa  2597400                    <---------MYB52(1)                  <---------MYB46(3)                 ------>ZmHOX2a(2)              --------->ATHB12              -------->HAHB4                                                                     ----             --------->ICU4                                                        --------->ANAC58          <---------AHL20(2)                ----------------->AGL1  <-----------HVH21      <---------          --------->AHL20(2)         <-------TEIL                  ------>ZmHOX2a(1) <------ZmHOX2a(1) ------>DAG2 <---------YAB1        --------->ARR14(2)          <---------ARR14(2)  --------->ANAC58 ----->DOF2 <---------TOE2(3)      <---------ARR14(2)    <---------KAN4(2) ---------->DOF2--------->ANAC46   aagggaatgaaattaatgatcggttgattttcaagcgggttcgggttccaatgctggagaatgagcatcctgtcattgaaagcccaaggaccccgtctca  2597500                                                      <---------ATHB12            <---------GLK1(2)                        ------>MYB46(1)   -------->P                                        ------>MYB83   ------>MYB83                                     --------->MYB52(1)                             <-   ------>MYB46(1)                                 --------->DEAR3(1)                           <---- <---------MYB55(2)                                --------->AtMYB61                          ------- --------->MYB46(3)                               <---------MYB52(2)                          ------- <---------ALFIN1      --------->HSFB2a(2)        --------->MYB46(3)                          ------- <---------MYB111(2)   <---------HSFB2a(2)  <---------WOX13(1)                               <------- <---------MYB111(1)  <---------LBD16      <---------ANAC58                                  <-------MYC3 --------->AtMYB61   <---------LBD16       <---------ANAC58                   --------->SPL7 ------->MYC3 ----->MYB46(3)  --------->ZAT14          --------->ATHB12                  --------->LBD16 --------- --HVH21  <---------ATHB12  --------->At4g35610  ------>NtERF2            <---------LBD16   <--------   ccaccaactccaacgattcttcactcgggaagatgaattggaattgattgccaccaacgatgcgcccatgaactagtccggacagtccccaaacacgcgg  2597600                                                                               ------>NtERF2                                                                               <------NtERF2                                                                              --------->RAP2.3(2)                                                                              --------->RAP2.6(2)                                                                              --------->DEAR3(1)                                                                             <------NtERF2                                                                             --------->RAP2.3(1)                                                                             --------->ATERF1(1)                                                                            ------>NtERF2                                                                            <---------ATERF1(1)                                                                            <---------RAP2.3(1)                                                                           --------->ANAC46                                                                           <---------bZIP60(1)                                                                           --------->DEAR3(1)                                                                           --------->ANAC58                     <---------GLK1(2)   --------->ANAC55(2)               <---------O2                     <---------ARR14(2)  <---------ANAC55(2)               --------->bZIP60(1)                     --------->ARR14(2)  --------->ANAC46                  --------->O2 -----NtERF2    =======================HOX2a_HOX2a                         --------->ANAC58 --NtERF2       ------>ZmHOX2a(2)     ----------->HVH21                    <---------DEAR3(1)      -- -->ANAC46    XXXXXXXXXXXXXXXXXXXX>MIR773B    ----------->HVH21           --------->ATERF1(1)      <- -->ANAC58    <---------ARR11(3)     <-----------HVH21                   <---------ATERF1(1)       <- -->ANAC58 <---------WOX13(1)   ------>ZmHOX2a(1)                       ----------->HVH21         <-- --LBD16 --------->ATHB12       --------->LBD16                    --------->ALFIN1      --------->GLK1(1) >ANAC46--------->ICU4        ----------->RAV1(2)             --------->MYB52(1) <----------DOF2xxxxx -O2    <---------YAB1--------->GLK1(2) <---------LBD16      <---------ARR14(2)--------->LBD16 ------   catcgatgtgatgattgatctcagattctgtctcctgggcatcacgggatgacccatgagaaggaaacggtgttgcgacgccgcatttcagaaatcgtgg  2597700                                                                              <---------ETT(2)                                                                              --------->DEAR3(1)                                                                              <---------DEAR3(1)             <---------ANAC46                                                *TSS        <---------ANAC55(2)              <-----------HVH21                 <---------O2     ---------        --------->ANAC46  ----------->RAV1(1)                           --------->ANAC46    ---------        --------->ANAC55(2)             ------->GAMYB                ----------->HVH21      <-------- ------->At4g35610       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ANAC58--------->ANAC46 ------GAMYB --------->ALFIN1           --------->DEAR3(1)       --------->ANAC58--------->ANAC58 --------At4g35610     --------->RAP2.6(2)                    --------->ARR14(2) --------->ANAC58   - -------MYB46(3)    --------->ANAC58   <------------AtMYB77   <---------ARR14(2)<-------------------- xxxxxxxxxxxxxxxxx>smallRNA(se3)       --------->MYB46(3)   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      - ------>AtMYB77     --------->ANAC58 --------->MYB52(1) --------->ATERF1(1)--------->O2 --------->MYB52(1)   cagttgcatcacgtagtgggggaagccacaacatggagataaccgtcgcacaatcggagtcgcagaaacgcctcacgacgtcgacgaaactatccgagaa  2597800                   ------->GAMYB                   --------->AtMYB61                  --------->MYB46(3)                 ------>MYB83              --------->SPL7            --------->ORA47(1)          --------->DEAR3(2)          --------->MYB46(3)          <------------AtMYB77         <---------At5g28300                                             <----------DOF2        <-----------GT1                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->ANAC58------>MYB46(1)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     --------->ANAC58------>MYB83                ------------>CBF --------->ANAC46     <---------ANAC55(2)                        --------->ANAC58  ------->GAMYB                  <---     --------->ANAC55(2)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <--- >LBD16 --------->MYB52(1)        --------------->AtSPL3         --------->MYB46(3)           <------ >HSFB2a(2)--------->DEAR3(1)     --------->ZAT6--------->ANAC46--------->ANAC58              <------ -HSFB2a(2)------->GAMYB        --------->MYB52(1)          --------->ANAC58      ------>ZmHOX2a(1) -------->ANAC58 ------>MYB46(1)<-----------GT1 --------->ANAC58<---------ATERF1(1)           ------- -WRI1<---------MYB52(2)    --------->DAG2   --------->DEAR3(1) --------->ANAC58 --------->TOE2(3) -------->ANAC58 -------->P---------->DOF2--------->DEAR3(1)--------->ANAC58 <----------DOF2  <------   ccaagtcaagtaaccgtccaaccaaatctaaaagtaactgtacatcgccctcgcaatcgctctcgcaagcgccatctttctttcctcagtagttaacttt  2597900                                    <-----------GT1                                 --------->AHL20(2)                                 <---------AHL20(2)        <---------AHL20(2)                              <---------ICU4          <---------AHL20(1)                              <---------AHL20(2)      <---------AHL20(2)   --------->AHL20(2)                              --------->AHL20(2)     --------->YAB1        <---------AHL20(2)                              --------->YAB1  --------->AHL20(2)          <---------AHL20(2)       --------->YAB1         <--------ATHB1 <---------YAB1--------->AHL20(2) ------AHL20(2)               <---------AHL20(1)    <---------YAB1        --------->AHL20(2)  <------ ------YAB1                  <---------YAB1  <---------AHL20(2)<-----------GT1 --------->YAB1 <------ ---DAG2                     --------->ICU4 <---------AHL20(1) <---------AHL20(2) --------->YAB1 ----DOF2                  --------->YAB1 <---------YAB1<---------ICU4<---------AHL20(2)     -------- -------->AGL15         --------->YAB1--------->TOE2(3)--------->ICU4--------->AHL20(2)      <------- ---------AGL15   <----------DOF2<---------ICU4   --------->YAB1  <----------DOF2<---------YAB1    <-   ttattgtaagcatagtttttctttaaacataataattttttcttaatattatttataatatttatttacttttaaatttttttataatacttctaataaa  2598000                                                                      <---------AHL20(2)                                                                      --------->AHL20(2)                                                                 <---------AHL20(1)                 <                                                                 --------->AHL20(1)       <---------ARR11(3) ---AHL20(2)                         <----------ID1              --------->AHL20(2)       --------->ARR11(3) ---ICU4                             ----------->GT1            <---------CCA1(2)     ---------->DOF2 ->AHL20(2)                        ---------->DOF2    <---------AHL20(2)      <---------YAB1        - --ATHB12                    --------->TOE2(3)        --------->AHL20(2)   --------->TOE1(2)        < --------YAB1         --------->AHL20(2)  --------->AHL20(2) <-------TEIL  --------->TOE2(2)   ------   tatgtttgtattggtgagaacgttttaaataccataaaaaagaaaaaaatacaaaattaaaaattcatatattaaaacatatgattacaaaagataatgg  2598100     <------MYB46(1)     <---------MYB46(3)     <------MYB83                <---------AHL20(2)   <---------WOX13(1)           <---------AHL20(2) --------->ATHB12               --------->AHL20(2) <--------ATHB1        --------->ARR14(2)             <---------AHL20(1) <---------ICU4        <---------ARR14(2)   <-----------RAV1(2)     <---------ARR11(3) -------->HAHB4        --------->GLK1(2)  --------->TOE2(3)         --------->ARR11(3) ---------YAB1      <---------ANAC58      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------->ICU4      <---------ANAC46   <-----------GT1<---------ARR11(3)                            - ---------ATHB12    <---------ANAC58 <---------AHL20(2)            --------->YAB1          --------->AHL20(2) --->YAB1   --------->TOE2(3)--------->ATHB12         --------->AHL20(1)     --------->YAB1<---------AHL20(2)   taatgattggttagcctcagtggcgaatccatgatttattttaacctcaggcacaatatttttaaaaaatgatattcaaaaatactaatataaaaaaatg  2598200             --------->ARR11(3)             <---------ARR11(3)            <---------CCA1(2)           <---------ARR11(3)           --------->AHL20(1)           <---------AHL20(1)           --------->ARR11(3)                                     --------->TOE2(3)      <---------AHL20(1)                                          <---------MYB59      --------->AHL20(1)                                    <---------ICU4      <---------AHL20(2)            <-----------GT1         --------->ZAT6  <---------At5g28300      --------->AHL20(2)    --------->TOE1(2)     --------->ARR11(3)       <-----------GT1   --------->YAB1           --------->TOE2(2)     <---------ARR11(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------YAB1           --------->YAB1        --------->GLK1(1)<---------DAG2               <----- -------->YAB1            <---------YAB1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ARR14(1) <-   ttttataataaaatatatctatagagctatcatacgattttccatactctgaaatcttttgatcactaccttatttatcaccgtatcaaatagttctctt  2598300  Previous    Next  AGI:  At2g06540.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 9.6e-42 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus) Range:  from: 2592439    to: 2597777    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g06541.1    Description:  pseudogene of hAT dimerisation domain-containing protein Range:  from: 2598219    to: 2600753    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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