AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<------ZmHOX2a(2) <-----------TGA1 <-----------HVH21 - ---------->HVH21 ---------->DOF2 <------------AtMYB77 --------
gagtgacattgcgaaactcgagaaaaaaagaagttgcttccgtcccaaggaaccgtcagggatcatagccaaaacgactccaccaacgatagaacccaca	29874100
--------->ALFIN1 =========================HOX2a_HOX2a <------ZmHOX2a(1) <---------ABI4(2) --------->DOF2 <------ZmHOX2a(1) <------ZmHOX2a(2) <-----------GT1 --->RAV1(1) =============================HOX2a_HOX2a <<<<<<<<<GT-1
taaaaagttgaactaggtagacttctgaggaaggagctggagcactcgagatcgaactctgaaatgactgatttacctttgaaaccaccgtcccaatccc	29874200
--------->ALFIN1 --------->TGA1a <---------TGA1a --------->O2 <---------O2 ------->TEIL ------>ZmHOX2a(2) <---------ALFIN1 ================================================MYC_MYB ----------->HVH21 <-------GAMYB <------ZmHOX2a(2) <----------------PIF3(2) --
aagctgaccggggaatcttacagatatcggtagttgccggattgcagatcgtgtggtcaagacagtgccacgtgggatatgcatctgtgaagacggtgat	29874300
------>ZmHOX2a(2) <------ZmHOX2a(2) <---------AGP1 <--------- <------ZmHOX2a(1) ----->TEIL <----------DOF2
gaatatctgctgagagtcaaaggttagcgcgagcccaacgagaactatctgtaagaactgcgagaatccgaaatcagacaagcttttctcgaggatcttg	29874400
----------->RAV1(1) ------>NtERF2 --------->ALFIN1 ------->TEIL ------>ZmHOX2a(2) --------->ALFIN1 <------NtERF2 <----------DOF2 --ARR10 <-----------RAV1(1) ------>NtERF2 <--------P ------>ZmHOX2a(2)
tcgaaagtcagaggtgaagaagtgtcttcatcttcttcaatgtgggtgggcaacaatggtgccaacgaatccgccatggttgcttactttgatcgatctt	29874500
<----------DOF2 ------>ZmHOX2a(2) *TSS <------ZmHOX2a(2) <-----------GT1 --------->AGP1 -------->ATHB1 <---------AGP1 ------- <--------HAHB4 <----------DOF2 --------->ALFIN1 ------>ZmHOX2a(2)
gttgagaatgtgagaattattacatcaaaattaaaaacaaacaactagtacttttgaaaatatataatgtgtggtcaagagatctgatctttgatgatca	29874600
<----------DOF2 ------>NtERF2 <------------CBF <----------DOF2 --------->ALFIN1 <-- ----->CBF <-----------GT1 ---------->ID1 ------->TEIL <----------DOF2 ---
atgagaaattgtttttttcttgtttgtttttgtctttttgaacaaactgtttaagatttgtatctgtgcgggcctttttgtgttaaactatgaccaataa	29874700
---------->DOF2 ----------->RAV1(1) ------ATHB1 ----------->HVH21 ----- ----->HAHB4 <-------TEIL <-------TEIL <-------TEIL <-------GAMYB
taattgaagcacaatataaatacatagttgctgatgtaagtacatgcgacatatcaacatggacacttctgcttataaattcatactgggccgttaagta	29874800
--------->PCF5 --------->PCF2 --------->ALFIN1 <-----------RAV1(1) --------->ALFIN1 <---------O2 <---------TGA1a --------->TGA1a --------->O2 ------------>OsbHLH66 ----------- ----------->HVH21 <-------TEIL <-----------RAV1(1) ----->DOF2 ----------->GT1 <-----------HVH21 <---------------AtSPL3 <-------------
aagcccattttaattggttactcaaattgagaagtctaccgctcacgtgtggcccacgataagtacgttatgcttccacatgttgcagagaattgtgaaa	29874900
>GT1 ----------TaNAC69(2) ---------->ID1 ----------->GT1
cttgaccactcaactcttaacatctcgccgataattttttgtttttgttttttttgtttttgtcataattcgccaagaaattatgttatatataatataa	29875000

AGI:	At1g79410.1
Description:	ATOCT5 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER5); carbohydrate transmembrane transporter/ sugar:hydrogen ion symporter. similar to ATOCT6, carbohydrate transmembrane transporter/ sugar:hydrogen ion symporter [Arabidopsis thaliana] (TAIR:AT1G16370.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64952.1); contains InterPro domain General substrate transporter; (InterPro:IPR005828); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196)
Range:	from: 29872773	to: 29874526	Orientation: Reverse
Links:	TAIR MIPS

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