AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
< ----- ------->TEIL <---- ---------->DOF2 --------->AtLEC2 <-------TEIL -----
ttctaggtttaattgatgaaaagagataacgtaagtcatgcacatgtaattaaattcatgcccctaactattaattcttgcaagtaattaaaaaataaaa	24888200
-------TEIL <-----------GT1 ---------->AtSPL3 <----------DOF2 ------>ZmHOX2a(2) -----------AtSPL8 ====================================HOX2a_HOX2a --- ---------->AtSPL8 ------>ZmHOX2a(1) <-----------GT1 <------
cgtacacaaaatatatttatgatcactaatcctttttaactactaacattaacgatttgatctatcaatgtctaatgatttcagggaaattttttgtttc	24888300
-------->ABF1 --------->O2 --------->TGA1a <---------O2 <------ --->ZmHOX2a(1) ------>ZmHOX2a(1) --------->ALFIN1 -----GT1 <---------TGA1a ----------->GT1 ---------->DOF2 <-----------RAV1(1)
ctcatgtttacacgtgtcaacatcctccgaaggaatgcaaatggttgtggaaaaaaaaaaaaaaaaaagaatgcaaatggttgagctcgtgttgggcttt	24888400
----------->GT1 ------------>MYB.PH3(1) ----------->GT1 ----DOF2 <----------DOF2 ---------->DOF2 ------
gttttcttattttgttttttaagggctttagtggcccatgtaagttatgtttcatcaataaaactccacttataagaaagaaaaaaaatggttacaaccg	24888500
<-----------RAV1(1) ----------->GT1 ----------->STF1 ->GAMYB ----------->TGA1 ------------>CBF *TSS
aagtccaaaaaaccaaaatagtgacgtaaaaactgttgcttaaacaatctgaagtctggacgcttgatttgattccttccgttttctccaaaaccagacg	24888600
<------NtERF2 ------>NtERF2 ----------->RAV1(1) <----------ID1 ------>NtERF2 ---------->ID1 --------->PCF2 <-----------------AGL3 <------NtERF2 <-----------HVH21 ------>ZmHOX2a(1) ------>NtERF2 ------>NtERF2
aaggcaatccctaaaccgtcacatttttggcgccaaatttcatcttcctcatcatggcctctgattccgccggagccacaatctccggcaacttctcaaa	24888700
<---------ALFIN1 ----------->HVH21 ------>NtERF2 ------>ZmHOX2a(1) <---------ALFIN1
ctccgacaactcagaaaccctaaatctcaacactacgaaactctactcatcagcaatttcctctatctctccacaattcccctcaccgaaaccaacatct	24888800
<---------ALFIN1 ----------->RAV1(1) ==== <---------ALFIN1 ---- ------>NtERF2 <----------DOF2 ------>NtERF2 <-----------HVH21 ------>ZmHOX2a(2) ------>ZmHOX2a(1) ------>ZmHOX2a(1) ------->TEIL ==================================HOX2a_HOX2a
tcatgtccttcaatccctaattcaaaacgaatccctaatactaacttcatcgtcgatctcttccgcctcccacaccaatcatcctccgtcgctttcttcc	24888900
==========================HOX2a_HOX2a ================================HOX2a_HOX2a <---------ALFIN1 ------>ZmHOX2a(1) ======================HOX2a_HOX2a ----------->RAV1(2) -->ZmHOX2a(1) <------ZmHOX2a(2) ------>ZmHOX2a(1) --
tctcacatttccactccgatcactactccggtctctcctcttcctggtccaaaggaataatctactgctcacacaaaaccgctcgtctcgttgcagaaat	24889000
<-- ------->TEIL <------ZmHOX2a(2) <----- ---->ZmHOX2a(1) <----------DOF2 ----------->GT1 -------->ATHB1
ccttcaagttccttcacaattcgttttcgctttacctatgaaccaaatggttaagatcgatggctctgaagttgtgttgattgaagctaatcattgtcca	24889100

AGI:	At1g66725.1
Description:	MIR163; miRNA
Range:	from: 24887594	to: 24888222	Orientation: Forward
Links:	TAIR MIPS

AGI:	At1g66730.1
Description:	ATP dependent DNA ligase family protein. similar to ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1), ATP binding / DNA ligase (ATP) [Arabidopsis thaliana] (TAIR:AT1G08130.1); similar to hypothetical protein OsJ_002946 [Oryza sativa (japonica cultivar-group)] (GB:EAZ13121.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68778.1); contains InterPro domain ATP dependent DNA ligase, C-terminal; (InterPro:IPR012309); contains InterPro domain DNA ligase, N-terminal; (InterPro:IPR012308); contains InterPro domain ATP-dependent DNA ligase; (InterPro:IPR000977); contains InterPro domain DNA repair metallo-beta-lactamase (InterPro:IPR011084);
Range:	from: 24888571	to: 24895486	Orientation: Forward
Links:	TAIR MIPS

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