AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
----------->RAV1(1) --------- <----------DOF2 <----------DOF2 <----------ID1 --------->ALFIN1
aaataatagtagaaccctcttttatttatacttatacttgatcatatactttacataatataaacaacaaataggtaatcaattttgttcgtgtgtggtg	24887200
<-----------GT1 <----------DOF2 ----------->HVH21 <------ZmHOX2a(1) ---------->DOF2 <---------ALFIN1 <--------ATHB1 <-------GAMYB <------ZmHOX2a(2) --------->PCF2 -------->P <<<<< >ALFIN1 ===================HOX2a_HOX2a ---------->DOF2 ------->GAMYB -------->ATHB1 <<<<<
tagacagttaggatttaacaagatcaaataaaaaagaccttttcaaatcaagccgagacccacgacaacgacacactaccccaataattgtttacacaat	24887300
<------- <-----------TGA1 <-----------HVH21 --------->O2 <---------O2 --------->TGA1a <---------ALFIN1 --------------->AtSPL3 --------------->AtSPL8 ----------------------->TaNAC69(2) <<<<ARR1 ------->GAMYB ================================================bZIP_DOF <<<<ARR2 ----------->HVH21 <----------DOF2 ----------->GT1 <-----------STF1
cataaatacccaacgaccggccaatgcgtatccactagtgaattgatacttttaaggttaagagaaaatgaggtttattttcgtacacgtcatttggtgt	24887400
<---------ALFIN1 --------AtSPL8 <-----------GT1 ------->GAMYB <---------AtLEC2
actgtctcgaccacattcacatgttttctgaggtcgagaaactattttaactaacacggcacttaaaattcaactgcaagattttttgaatggaagactt	24887500
----------->GT1 ---------->DOF2 ----------->GT1 <-----------GT1 <-----------GT1 ---------->DOF2 ----------->TBP <------NtERF2 *TSS
attagttattaccaaatcaaaagtcttctgatcatcaaaggaaaattagtataaataagcatagaggcgtccatggattatcacagttctcatcaaatat	24887600
----------->GT1 ---------->DOF2 ---------->DOF2 <------ZmHOX2a(2) <----
ttgaaagtatcaaacaaaaaaaggagagtgagaaaaataaagagagagatagagagagatcatgtccactactcaagagcataggtcttgattggtggaa	24887700
------->TEIL <xxxxxxxxxxxxxxxx smallRNA(s) <------ZmHOX2a(1) ------ARF1 ----------->GT1 -------->P ------->GAMYB <---------ALFIN1 --
gacaagtaccttagataaaccgaccaaaacccggtggataaaatcgagttccaacctcttcaacgacaacgatttcaacactctcttccaggaacaactt	24887800
--------->AtLEC2 <------------- <-----------RAV1(2)--------->ALFIN1 ------->TEIL ---->ZmHOX2a(1)---------->DOF2 ------>ZmHOX2a(1) ---------->DOF2 <-------GAMYB
cctccaggcagatgatactaaagtgctggagttcccggttcctgagagtgagtccatatcaaaatgcgcattcgttatcacttggttgaacccatttggg	24887900
--------->O2 ----------->HVH21 <---------O2 ----------------------->TaNAC69(2) <-----------HVH21 ----AGL1 ----------->GT1 ------>ZmHOX2a(1) <------ZmHOX2a(1)
gatttaaatttggaggtgaaatggaacgcgtaattgatgactcctacgtggaacctcttcttaggaagagcacggtcgaagaagtaactgcgcagtgctt	24888000
xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(s) <xxxxxxxxxxxxxxxx smallRNA(i) <xxxxxxxxxxxxxxxx smallRNA(i) <xxxxxxxxxxxxxxxx smallRNA(i) <xxxxxxxxxxxxxxxx smallRNA(s) <xxxxxxxxxxxxxxxx smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(s) ---------->DOF2 <------ZmHOX2a(1) <-----------GT1
aaatcgtagatgctaaagtcgttgaagaggacttggaacttcgatattatcccccgtgttttgtccagtttctctataggttgtgcctgaaaatatgggt	24888100

AGI:	At1g66725.1
Description:	MIR163; miRNA
Range:	from: 24887594	to: 24888222	Orientation: Forward
Links:	TAIR MIPS

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