AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<------ZmHOX2a(1) xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i) --------->ALFIN1 -------->ATHB1 xxxxxxxxxxxxxxxx>smallRNA(s) -- <-----------ARR10 --------->ALFIN1 -------->ATHB1 ------
gcgctgaagtatcttcttccgggtggaagtgtctggaagagagtgttgaaatcattgaggctgaaatcattgaagaggacttggaactcgatgttatctg	24878000
<---------ALFIN1 <-------TEIL <-----------HVH21 ---->NtERF2 ------->TEIL ---------->DOF2 ----->HVH21 <----------DOF2 ----------->RAV1(1) ------->GAMYB
ccgggttttgtccggtttctctacggtacttttcttctaccgcatctattatgttttgaactgccacaaaagtgttaggtccacttgcacaaccgaaatc	24878100
---------->ID1 <-----------RAV1(1) <----------DOF2 <<<<<<<<<<WRKY26 <<<<<<<<<<WRKY38 <<<<<<<<<<WRKY43 ------>ZmHOX2a(2) ------>ZmHOX2a(1) ==========================HOX2a_HOX2a ===========================HOX2a_HOX2a ---------->DOF2 <------ZmHOX2a(2)---------->ID1
cgctacaatgaagcgattcgaaatcaagtctaggtcgagattggctgagatcgccttggtcatcttgtcctttgtcgcttccaacaatgctctctgtata	24878200
<-- <-------TEIL --------- <-----------GT1 ----------->RAV1(2)<-------GAMYB ----------->ARR10 <------ZmHOX2a(1) <------ZmHOX2a(1) ------->TEIL <------ZmHOX2a(1)
tagagaagatattaaatatatacatcataggaattaagaacatagataactaggaatgcaaatcatttatatttgaacctgatacgaggattgttggtta	24878300
===================HOX2a_HOX2a =============================HOX2a_HOX2a ---------GT1 ------>ZmHOX2a(1) -->GT1 <------ZmHOX2a(1) ------>ZmHOX2a(2) <----------DOF2 <----------DOF2 <----
taactctcaggaccgtctcctccaatcatgatccaatctggagtagtagtcatgatatctctctctcttttttctcaaaaatcttttattgtttgatact	24878400
--------------->AGL15 <---------------AGL15 ----------->GT1 ================== *TSS <-----------TBP <-----------GT1 ------DOF2 ----------->GT1 ------->TEIL <-----------TBP ------------>CBF
ttggtttatgatgagagtagtgataatccatggacctctcgatgcttatatatagtaatattccgtgttcttaaaaaacaatttactgtaatgagaataa	24878500
--------------->AGL15 <-----------GT1 ---------->DOF2 <---------------AGL15 - ------------>CBF <------NtERF2 ------->TEIL ------->GAMYB ----- ===========================================================MADS_MADS -----
attaaatatatggaacgtcgtccaattaaaaaaaggcagcttcttactatatgaagctgaatgcggtcaacaaacgttgcttatatgacaaattataagt	24878600
<-----------RAV1(2) ----------->GT1 ----------->RAV1(1) <----------DOF2 ----------->HVH21 ------>ZmHOX2a(2) <------NtERF2 <------ZmHOX2a(2) ----->NtERF2 <---------AGP1 ------>TGA1 ----------->GT1 --------->AGP1 ------>HVH21 ----------->GT1 <-----------GT1 ---------->DOF2
gacggcattgcgacaggtgtaatttaaaataattatatgaccacatagatctttaaagttaaaacattaaatatagtttggaaaatgaagtataagatta	24878700
<----- ------->TEIL ----------->GT1 ------
agtatgaaactgaagtataaggtgaagtatgaaatgtttcagtaaatttttaataaattaataaactaaactatgatatttttattaatttatagaatta	24878800
---HAHB4 ----------->GT1 -->ATHB1 ----------->GT1 <-----------RAV1(2)
ttaatttagtgatatatactcgaaaattaatttagaaccggaaaaaggttttaagaattagaatcttggagatatgtcaatgtaacaggcgagatgaaat	24878900

AGI:	At1g66700.1
Description:	PXMT1; S-adenosylmethionine-dependent methyltransferase. similar to S-adenosyl-L-methionine:carboxyl methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G66690.1); similar to AtPP protein [Brassica napus var. napus] (GB:CAB89183.1); contains InterPro domain SAM dependent carboxyl methyltransferase (InterPro:IPR005299)
Range:	from: 24876954	to: 24878421	Orientation: Reverse
Links:	TAIR MIPS

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