AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<------ZmHOX2a(1) ------>ZmHOX2a(1) xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i) <-----------ARR10 --------->ALFIN1 xxxxxxxxxxxxxxxx>smallRNA(i) ------>DOF2 --------->ALFIN1 xxxxxxxxxxxxxxxx>smallRNA(s)
aaagtatcttctccccggagggagtgtctggaagagagtgttgaagtcattgattcttaagtcgttgaagaggacttggaactcgatgttatcctccggg	24874100
<---------ALFIN1 <-------TEIL <-----------HVH21 ---------->DOF2 <---------ALFIN1 ----------->RAV1(1) ------->GAMYB
ttttgtccggtttctctaagatacttctcttccacggcatctattatgttttggactgccacaaaagtgttaggtccacttgcacaaccgaaatccgcta	24874200
------>ZmHOX2a(2) ==========================HOX2a_HOX2a ===========================HOX2a_HOX2a <------NtERF2 <----------DOF2 <------NtERF2 ------>ZmHOX2a(1) --------------- --------->ALFIN1 <-----------HVH21 ------>NtERF2 <----------DOF2 ---------->DOF2 <--------P <------ZmHOX2a(2)---------->ID1 ---------->DOF2 <---
caatgaagcgattcgaaatcaagtctaggtcgaggttggcggagatcgcctcggtcatcttgtcctttgccgcttccaacaaagctctctttatatagag	24874300
<--- ----------->GT1 <----------DOF2 ----------->RAV1(2) >AGL15 <-------TEIL =================== ---ZmHOX2a(1) <-------TEIL ------->TEIL ------->TEIL <----
gagactcagttaaatacatacatctttggagttaagaaccttgctagctagttatgaaaatttgcaaatcatataaatgtatgaacctgatacgatgact	24874400
<----------DOF2 <-------GAMYB ----GAMYB <-----------HVH21 =======RAV <- -------RAV1(1) ------>ZmHOX2a(2) <----------DOF2
gttggttgtaactttcagggccatatccaccaatcatgatccaatcttgagtagtagtcattatatatctctctgttttatctcaaacttcttttcttgt	24874500
<----------DOF2 *TSS <-----------TBP ------------>CBF <----------DOF2 <-----------TBP ----------->GT1 < ----------GT1 <-----------TBP ---------->DOF2 <-
ttaactttagtttatgatgagagtagtgagtccatagacctctctctatgcttatatatatagtgcttgaaaggcaatatactgagaactaattaaacat	24874600
---------AtLEC2 ---------->DOF2 ------TEIL <-----------HVH21 <------ZmHOX2a(1)
gtgcatgggaaactcgtcaaaagaaaacaacagcttatttattataggaacttgaatgcgttcaacataacgttccatatatgacataatcaattagact	24874700
----------->GT1 ----------->GT1 <-----------GT1 <
atgatatgtgttaaatagttatatggaaattgaaacacaaataaggtttagaaattgaagtaagaaatgtttcagtagaattttaacaatttaataaatt	24874800
---------->DOF2 --------------->AGL15 <---------------AGL15 ------ZmHOX2a(1) <-----------------AGL3 --------
caggattatggtattttagtgatatataaattgtcgaaaacttaatttagaaccaaaagaaatgttttgatttatcgcaattaaataacattagtttgta	24874900
---------->DOF2 ---------->DOF2 --->GT1 ------->TEIL <------ZmHOX2a(2) ---------->DOF2
aaattatctgtaatcatgtacttctagcagatttgtcaatgtagatcatagccttcaaagaagccatggatggccaattgtttgagaagaaagagtccaa	24875000

AGI:	At1g66690.1
Description:	S-adenosyl-L-methionine:carboxyl methyltransferase family protein. similar to PXMT1, S-adenosylmethionine-dependent methyltransferase [Arabidopsis thaliana] (TAIR:AT1G66700.1); similar to AtPP protein [Brassica napus var. napus] (GB:CAB89183.1); contains InterPro domain SAM dependent carboxyl methyltransferase (InterPro:IPR005299)
Range:	from: 24873217	to: 24874513	Orientation: Reverse
Links:	TAIR MIPS

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