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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC46
<----------
DOF2
--------->
ANAC58
<-----------------
AGL3
------->
TEIL
<---------
ARR14(2)
<---------
ANAC46
<---------
YAB1
------------>
AtSPL8
--------->
LBD16
<----------
DOF2
<-----------------
AGL2
>
AHL20(2)
--------->
ARR14(2)
<---------
At5g28300
----------->
HVH21
<
-
AHL20(2)
<----------
DOF2
--------->
ANAC58
<-----------
GT1
<---------
ANAC46
<---------------
AGL15
catgtactttctctttgccctatccagagttgctacaagcctaaaactcggttttaccacgatttttctttggtgtatttgacagactattaatggtttg
22703300
---------->
DOF2
----------->
GT1
<---------
ANAC58
<---------
ANAC46
--------->
At4g35610
<---------
ANAC58
<------
ZmHOX2a(1)
<---------
YAB1
--------->
ATHB12
<---------
TOE2(3)
--------->
YAB1
--------->
ICU4
<---------
TOE1(3)
--------->
ZAT6
--------->
YAB1
<---------
WOX13(1)
--------->
AtLEC2
-----------
GT1
----------->
GT1
<---------
At4g35610
<-------
TEIL
XX
tttatctctattatcagttgaattgttatatcaaaatttgaactgattgggtataaaaagaaactgagaactgattcatgctaaggaaaccttgtttaac
22703400
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
--------->
ARR14(2)
--------->
AtMYB61
<---------
ARR14(2)
----------->
RAV1(1)
------->
GAMYB
--------->
ANAC46
<---------
At5g28300
<---------
ATHB12
<-----------
GT1
<---------
At4g35610
<-----------
GT1
--------->
WOX13(1)
<---------
AHL20(2)
--------->
At4g35610
<----------
DOF2
<---------
ANAC46
--------->
AHL20(2)
------->
TEIL
XXXXXXXXXXXXXXXXXX>
MIR782
<---------
ATHB12
<---------
AHL20(2)
<-------
TEIL
<
aaataccatggatgctttttaaccgtatcagcctctccaatgttttcgtaaatcaatagttcaaaatttttttctaccacacaagtgcatctccattcca
22703500
--------->
ANAC58
--------->
ANAC58
---------->
DOF2
--------->
ARR14(2)
<---------
ARR14(2)
<------
NtERF2
<---------
DEAR3(1)
--------->
ALFIN1
--------->
ALFIN1
<---------
ANAC58
<---------
CCA1(1)
--------->
LBD16
<---------
RVE1(1)
<---------
ANAC58
<---------
ARR11(3)
<---------
ANAC46
--------->
AHL20(2)
<---------
GLK1(2)
<---------
ANAC58
<---------
AHL20(2)
<---------
YAB1
<---------
ANAC58
--------->
WOX13(1)
------->
TEIL
--------->
YAB1
--------->
ARR11(3)
<---------
LBD16
<-
-----------
GT1
--------->
YAB1
<---------
CCA1(2)
--------->
ICU4
<-----------
RAV1(1)
-----
attttcaatctatataaatcatatgtattttttgtatccaatagtcatctttgtaaagattttttgttcgtgtgtggcggataagcaaaaacagaataac
22703600
--------->
CCA1(2)
<---------
ARR14(2)
------->
PIF5
------->
MYC4
<-------
MYC4
------->
MYC2
<-------
PIF5
<-------
MYC2
------->
MYC3
<-------
MYC3
--------->
PIF3(3)
<<<<<<<<<<
HY5
<---------
ANAC46
<---------
PIF3(3)
--------->
ARR14(2)
-
--------->
O2
<---------
REM1(1)
<-----
<---------
O2
<------
MYB83
--------
--------->
TGA1a
<------
MYB46(1)
----------
<---------
TGA1a
<---------
MYB46(3)
<---------
ZAT2
--------
--------
GLK1(2)
---------------->
PIF3(2)
<---------
At4g35610
--------->
ZAT2
--------
---->
YAB1
<------------
CBF
--------->
ARR11(3)
<---------
ARR14(2)
*
TSS
<---------
MYB52(1)
-
ataatctcttatccaacttatattgccacgtggacagatatagttggtgaagcagatactaatctaatctgagc
aaaaccagttgggctatttgaaagcc
22703700
--------->
YAB1
<---------
YAB1
<---------
YAB1
--------->
YAB1
--------->
MYB46(3)
-------->
ANAC58
------>
MYB83
<---------
ICU4
-----
ID1
------>
MYB46(1)
->
ANAC58
--------->
TOE2(3)
--------->
AtMYB61
<---------
CCA1(2)
>
DOF2
--------->
TOE2(3)
<---------
MYB59
<---------
ICU4
->
ANAC46
<---------
HSFB2a(1)
--------->
TOE1(3)
<---------
ICU4
->
ANAC58
--------->
HSFB2a(1)
--------->
YAB1
--------->
TOE2(3)
--------->
YAB1
----------
-------->
ANAC58
--------->
TOE1(3)
--------->
YAB1
<---------
ICU4
----------->
HVH21
<
acaagtacttggaacctttgtttcttctaccctaacatagcccttgcaaaccataaccaaaccatcatcatcatcatctcttggtgacagaagaaaagag
22703800
<---------
RVE1(1)
xxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
CCA1(1)
--------->
ANAC58
--------->
At4g35610
<-----
--------->
At4g35610
<---------
ZAT2
<-----
<------
NtERF2
<---------
At4g35610
<-----
<------
ZmHOX2a(1)
<---------
At4g35610
------>
ZmHOX2a(1)
<---------
ARR11(3)
<-----
>
DOF2
----------->
GT1
--------->
ANAC58
xxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<-----
---------
TOE2(3)
----------->
RAV1(1)
-------->
P
--------->
ZAT14
--------->
ARR11(3)
--------->
ZAT2
ttgaggaacagagaaa
atggcagcacaagcacttgtgtcttcttcacttacctcctctgttcagacagctagacagatatttggctcaaaaccagttgcg
22703900
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
GLK1(1)
<---------
GLK1(1)
<---------
At4g35610
<---------
AGP1
----------->
HVH21
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
ARR14(2)
----
ANAC46
---------->
DOF2
----------->
RAV1(2)
<---------
ARR11(3)
----
RAP2.6(2)
---------->
ID1
<---------
ALFIN1
--------->
ARR11(3)
----
ANAC55(1)
<----------
DOF2
--------->
At4g35610
----------->
HVH21
--------->
ARR14(2)
----
ANAC58
<---------
GLK1(1)
--------->
ZAT2
<-----------
HVH21
<---------
CCA1(2)
----
ANAC58
--------->
GLK1(1)
<---------
At4g35610
<-------
TEIL
<----------
DOF2
<------
tctgcctcacagaagaagagttcctttgttgttaaagctgctgcaactccacctgtcaag
gtacatgacagtctctattctttcacagatctctctcttt
22704000
<---------
ANAC58
<---------
ANAC58
<---------
TOE2(3)
<------------------------
ANAC81
>>>>>>>>>>>>>>>>>
LFY
<
------>
ZmHOX2a(2)
------->
GAMYB
<----
--------->
ARR11(3)
--------->
DEAR3(2)
<----
<---------
ARR11(3)
--------->
MYB46(3)
xxxxxxxxxxxxxxx
--------->
GLK1(2)
----------->
RAV1(1)
<---------
GLK1(2)
----
DOF2
<---------
KAN4(1)
<---------
AtMYB61
--------->
MYB52(1)
<----------
DOF2
<----
ctctatgtactgaataatctgatcttgattttgtgttttggtttttcag
caaggagccaacagaccattgtggtttgcttcatcgcagagtctctcttac
22704100
--------->
ANAC58
--------->
ANAC58
<------
MYB46(1)
<------
MYB83
<---------
AHL20(2)
---
<-----------
RAV1(2)
--------->
AHL20(1)
xxxxxx
<---------
ANAC46
--------->
AHL20(2)
-------
---------
AtLEC2
--------->
AHL20(2)
<---------
YAB1
-----
ANAC58
<---------
DAG2
<---------
GLK1(2)
--
-----
ANAC58
<----------
DOF2
--------->
ARR11(3)
<---------
YAB1
<------
x>
smallRNA(s)
--------->
ANAC46
<---------
AHL20(1)
--------->
ARR11(3)
<------
-----
ANAC46
--------->
ICU4
--------->
HSFB2a(2)
<---------
ARR11(3)
<---------
ARR11(3)
-------
ttggatggcag
gtaatgttcaaacaacttttggaattttatttgttttgagaacttcatgatgttcaaaatttggagatgttctgattcttcttgcag
ct
22704200
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AGI:
At1g61520.1
Description:
LHCA3 (Photosystem I light harvesting complex gene 3); chlorophyll binding. similar to LHCA4 (Photosystem I light harvesting complex gene 4), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G47470.1); similar to chlorophyll a/b binding protein (GB:1609235A); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)
Range:
from: 22703675
to: 22705048
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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