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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                 --------->ANAC46
   <----------DOF2               --------->ANAC58                                 <-----------------AGL3
 ------->TEIL    <---------ARR14(2)                                  <---------ANAC46<---------YAB1
------------>AtSPL8  --------->LBD16                            <----------DOF2   <-----------------AGL2
>AHL20(2)        --------->ARR14(2)                <---------At5g28300     ----------->HVH21       <
-AHL20(2)<----------DOF2         --------->ANAC58 <-----------GT1  <---------ANAC46<---------------AGL15
 
catgtactttctctttgccctatccagagttgctacaagcctaaaactcggttttaccacgatttttctttggtgtatttgacagactattaatggtttg  22703300
                                                    ---------->DOF2
                                             ----------->GT1
                                             <---------ANAC58
                                             <---------ANAC46
            --------->At4g35610              <---------ANAC58                    <------ZmHOX2a(1)
         <---------YAB1                 --------->ATHB12                       <---------TOE2(3)
       --------->YAB1                  --------->ICU4                          <---------TOE1(3)
 --------->ZAT6            --------->YAB1 <---------WOX13(1)              --------->AtLEC2
-----------GT1     ----------->GT1   <---------At4g35610               <-------TEIL               XX
 
tttatctctattatcagttgaattgttatatcaaaatttgaactgattgggtataaaaagaaactgagaactgattcatgctaaggaaaccttgtttaac  22703400
                                                                           --------->ANAC46
                                                                           --------->ANAC58
                                                                           --------->ANAC58
                      --------->ARR14(2)                                 --------->AtMYB61
                      <---------ARR14(2)                                 ----------->RAV1(1)
                   ------->GAMYB                                        --------->ANAC46
                 <---------At5g28300            <---------ATHB12      <-----------GT1<---------At4g35610
                <-----------GT1               --------->WOX13(1)<---------AHL20(2)   --------->At4g35610
           <----------DOF2                <---------ANAC46     --------->AHL20(2)   ------->TEIL
XXXXXXXXXXXXXXXXXX>MIR782           <---------ATHB12           <---------AHL20(2) <-------TEIL     <
 
aaataccatggatgctttttaaccgtatcagcctctccaatgttttcgtaaatcaatagttcaaaatttttttctaccacacaagtgcatctccattcca  22703500
                                                                               --------->ANAC58
                                                                               --------->ANAC58
                                                                             ---------->DOF2
                                                                            --------->ARR14(2)
                                                                            <---------ARR14(2)
                                                                           <------NtERF2
                                                                      <---------DEAR3(1)
                                                                      --------->ALFIN1
                                                                    --------->ALFIN1
                                                                <---------ANAC58
                                                       <---------CCA1(1)  --------->LBD16
                                                       <---------RVE1(1) <---------ANAC58
                                                      <---------ARR11(3) <---------ANAC46
          --------->AHL20(2)                          <---------GLK1(2)  <---------ANAC58
          <---------AHL20(2)               <---------YAB1       <---------ANAC58
  --------->WOX13(1)  ------->TEIL    --------->YAB1  --------->ARR11(3)<---------LBD16           <-
-----------GT1 --------->YAB1 <---------CCA1(2)     --------->ICU4  <-----------RAV1(1)        -----
 
attttcaatctatataaatcatatgtattttttgtatccaatagtcatctttgtaaagattttttgttcgtgtgtggcggataagcaaaaacagaataac  22703600
                                  --------->CCA1(2)
                                 <---------ARR14(2)
                         ------->PIF5
                         ------->MYC4
                         <-------MYC4
                         ------->MYC2
                         <-------PIF5
                         <-------MYC2
                         ------->MYC3
                         <-------MYC3
                        --------->PIF3(3)
                        <<<<<<<<<<HY5
                        <---------ANAC46
                        <---------PIF3(3)          --------->ARR14(2)                              -
                        --------->O2       <---------REM1(1)                                  <-----
                        <---------O2     <------MYB83                                       --------
                        --------->TGA1a  <------MYB46(1)                                  ----------
                        <---------TGA1a <---------MYB46(3)                   <---------ZAT2 --------
--------GLK1(2)      ---------------->PIF3(2)  <---------At4g35610           --------->ZAT2 --------
---->YAB1        <------------CBF--------->ARR11(3)<---------ARR14(2)     *TSS<---------MYB52(1)   -
 
ataatctcttatccaacttatattgccacgtggacagatatagttggtgaagcagatactaatctaatctgagcaaaaccagttgggctatttgaaagcc  22703700
                                                                   --------->YAB1
                                                                  <---------YAB1
                                                               <---------YAB1
                                                             --------->YAB1
                                                         --------->MYB46(3)
-------->ANAC58                                        ------>MYB83<---------ICU4
-----ID1                                               ------>MYB46(1)
->ANAC58                  --------->TOE2(3)          --------->AtMYB61  <---------CCA1(2)
>DOF2      --------->TOE2(3)                         <---------MYB59  <---------ICU4
->ANAC46  <---------HSFB2a(1)                  --------->TOE1(3)<---------ICU4
->ANAC58  --------->HSFB2a(1)  --------->YAB1  --------->TOE2(3)--------->YAB1            ----------
-------->ANAC58           --------->TOE1(3)    --------->YAB1<---------ICU4     ----------->HVH21  <
 
acaagtacttggaacctttgtttcttctaccctaacatagcccttgcaaaccataaccaaaccatcatcatcatcatctcttggtgacagaagaaaagag  22703800
                                                                         <---------RVE1(1)
                         xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------CCA1(1)
                       --------->ANAC58                        --------->At4g35610            <-----
                  --------->At4g35610                          <---------ZAT2                 <-----
                  <------NtERF2                                <---------At4g35610            <-----
 <------ZmHOX2a(1)<---------At4g35610              ------>ZmHOX2a(1)    <---------ARR11(3)    <-----
>DOF2----------->GT1   --------->ANAC58           xxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <-----
---------TOE2(3) ----------->RAV1(1)         -------->P --------->ZAT14 --------->ARR11(3)--------->ZAT2
 
ttgaggaacagagaaaatggcagcacaagcacttgtgtcttcttcacttacctcctctgttcagacagctagacagatatttggctcaaaaccagttgcg  22703900
                                                                                      ------>ZmHOX2a(2)
                                                                                     <------ZmHOX2a(2)
                                                                                     --------->GLK1(1)
                                                                                     <---------GLK1(1)
                                   <---------At4g35610                              <---------AGP1
  ----------->HVH21          xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    <---------ARR14(2)
----ANAC46                   ---------->DOF2   ----------->RAV1(2)                  <---------ARR11(3)
----RAP2.6(2)           ---------->ID1       <---------ALFIN1                       --------->ARR11(3)
----ANAC55(1)       <----------DOF2--------->At4g35610       ----------->HVH21      --------->ARR14(2)
----ANAC58     <---------GLK1(1)   --------->ZAT2 <-----------HVH21                <---------CCA1(2)
----ANAC58     --------->GLK1(1)<---------At4g35610       <-------TEIL      <----------DOF2  <------
 
tctgcctcacagaagaagagttcctttgttgttaaagctgctgcaactccacctgtcaaggtacatgacagtctctattctttcacagatctctctcttt  22704000
                                                                     <---------ANAC58
                                                                     <---------ANAC58
                                                                  <---------TOE2(3)
                      <------------------------ANAC81      >>>>>>>>>>>>>>>>>LFY                    <
                   ------>ZmHOX2a(2)                     ------->GAMYB                         <----
                 --------->ARR11(3)                     --------->DEAR3(2)                     <----
                 <---------ARR11(3)                     --------->MYB46(3)           xxxxxxxxxxxxxxx
            --------->GLK1(2)                         ----------->RAV1(1)           <---------GLK1(2)
----DOF2  <---------KAN4(1)       <---------AtMYB61   --------->MYB52(1)  <----------DOF2      <----
 
ctctatgtactgaataatctgatcttgattttgtgttttggtttttcagcaaggagccaacagaccattgtggtttgcttcatcgcagagtctctcttac  22704100
      --------->ANAC58
      --------->ANAC58
      <------MYB46(1)
      <------MYB83               <---------AHL20(2)                                              ---
    <-----------RAV1(2)          --------->AHL20(1)                                           xxxxxx
    <---------ANAC46             --------->AHL20(2)                                          -------
---------AtLEC2                 --------->AHL20(2)                                   <---------YAB1
-----ANAC58            <---------DAG2                                            <---------GLK1(2)--
-----ANAC58            <----------DOF2         --------->ARR11(3)              <---------YAB1<------
x>smallRNA(s)    --------->ANAC46<---------AHL20(1)                      --------->ARR11(3)  <------
-----ANAC46--------->ICU4 --------->HSFB2a(2)  <---------ARR11(3)        <---------ARR11(3)  -------
 
ttggatggcaggtaatgttcaaacaacttttggaattttatttgttttgagaacttcatgatgttcaaaatttggagatgttctgattcttcttgcagct  22704200
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AGI:  At1g61520.1   
Description:  LHCA3 (Photosystem I light harvesting complex gene 3); chlorophyll binding. similar to LHCA4 (Photosystem I light harvesting complex gene 4), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G47470.1); similar to chlorophyll a/b binding protein (GB:1609235A); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)
Range:  from: 22703675    to: 22705048    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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