Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                        ---------->DOF2                                                                                     --------------->AGL15                                                                                     --------->LBD16                                                                                     <---------------AGL15                                                          ------->GAMYB             -----------------                                                        --------->At4g35610         -----------------                            <---------At4g35610         <---------At4g35610  <----------DOF2<--------                  <---------ICU4                       <---------ATERF1(1)  --------->MYB52(2)                 <---------ATHB12  ------->TEIL ---------->DOF2<---------CCA1(2)    -----------------   aaacttcttcaacatccaaatcatttctacagctatgaagctagaagaatcaaagggcaactcccatctctaaatcgttctttgttccccaaaagagaaa  22360000                                                        --------->YAB1                                                     --------->YAB1                                                    --------->KAN4(1)                                                    --------->ICU4                                                   <---------KAN4(2)                                               --------->HSFB2a(2)                                               <---------HSFB2a(2)                                              =====================================HOX2a_HOX2a                                              ------>ZmHOX2a(2)                                             <------ZmHOX2a(2)                                             --------->CCA1(2)                                            --------->GLK1(2)                  <---------ARR11(3)                                            --------->ARR14(2)              <------ZmHOX2a(1)                       --------->LBD16      --------->ARR11(3)           --------->LBD16                      <---------ANAC46      <---------ARR14(3)           <---------LBD16              ------->GAMYB--------->GLK1(2)<---------ARR11(3)           <---------HSFB2a(2) -->GT1      --------->MYB46(3)             <---------ARR14(2)      <----------DOF2 >AG--------->YAB1   <---------LBD16        --------->ARR14(3)     <---------DAG2   --------->ATHB12 >AGL2      -------->P<---------LBD16       <---------AGP1        --------->HSFB2a(1) --ID1     <-----------GT1--------->GLK1(1) --------->AGP1        <---------HSFB2a(1)---------------- >AGL1     --------->WOX13(1)             ----------->ARR10      ------->TEIL  --------->ARR11(3)  <-   aaacattgaaaatcaaccatcttagcgggaatctaataaaaccgaagatctggaataatcaaaatcgaacctttccgaggagaacttcattggtctcagg  22360100                                                                                      <---------ALFIN1                                                                                     --------->At4g35610                                                                                     <---------ABI4(2)                                                                                     --------->ZAT18                                                                              --------------------->WRI1                                                                              <---------ANAC46                                                                              <---------ANAC58      --------->MYB52(1)                    <---------ANAC58                  <---------ANAC58     <---------GLK1(1)                      <---------ANAC58                ------>NtERF2 --------->LBD16     --------->CCA1(2)                      <---------ANAC46                --------->LBD16    <---------ARR11(3)            <------NtERF2   <---------MYB46(3)       <---------RAP2.6(2)-------    --------->ARR11(3)     --------->MYB52(1)  <---------ANAC46           <---------LBD16<---------ANAC46 ----->WRI1<---------DEAR3(1)  <---------LBD16--------->ALFIN1   <---------ANAC58    <---------ZAT2 < --------ANAC46<-----------HVH21 --------->LBD16 <---------ANAC46<---------ANAC58    <---------At4g35610   gccgtagatatcggaggtgtcaaggagagtaacgccggagtgaatagcgtggtggatgagagcgatggcttcattttccggcttgggagcaccgtagaaa  22360200                                                                                    ------>NtERF2                                                                                    --------->LBD16                                                                                   --------->ANAC58                                                                                   --------->ANAC46                                                                              <---------HSFB2a(1)                                                                              <---------HSFC1(2)                                                                              --------->HSFB2a(1)                                                                              --------->ZAT2                      <---------ANAC58                                        --------->HSFC1(2)                      <---------ANAC58                                        <---------ZAT2                ------->GAMYB                                                --------->ANAC58               --------->MYB46(3)  --------->TOE2(3)      <-------TEIL   --------->ANAC46              --------->ANAC58 --------->ARR14(2)      --------->ZAT2    --------->ANAC58              --------->ANAC58 <---------ARR14(2)      <---------ZAT2    --------->ANAC58          --------->ANAC58    --------->At4g35610      --------->At4g35610   --------->ANAC58          --------->AtLEC2    <---------At4g35610      <---------At4g35610--------->LBD16          --------->ANAC58 --------->LBD16            <---------TOE1(2) <---------LBD16 --->DOF2 --------->ANAC46<---------ANAC46      <---------ANAC58      --------->ANAC46     ------->TEIL xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            <---------ANAC58------>ZmHOX2a(1)  --------->ANAC58<-   gcggagaggcccatgcaaccaaggccttgcgcagatacctcaaggccttggcttcccagcttcatccttctcactccgcaagcttccgccatgaatctct  22360300                                                                                            <--------                                                                                    <---------MYB46(3)                                                                                 <------MYB46(1)                                                                                 <------MYB83                                    ----------->HVH21                           <---------AtMYB61                                  ----------->GT1                 <---------ZAT18<---------MYB46(3)                                  --------->At4g35610     <---------AHL20(2) <-----------RAV1(1)                                  <---------bZIP60(2)     --------->AHL20(2) <---------MYB46(3) ----------HVH21           <---------------AGL15        ------->TEIL   <---------MYB46(3)<---------AtMYB61   ctgtcacaactatctctgtctcttcacttctctatgaggtgactcttgtagagctatgaattttttagtggagttgttgttgttggtggtgatggtgtga  22360400                                                                    <---------LBD16                                         <------MYB83 --------->TGA1a                                         <------MYB46(1)           --------->ETT(1)            <-----                          *TSS          --------->MYB59            <---------LBD16         --------->AHL20(2)                      <---------AtMYB61 --------->MYB46(2)         <---------DEAR3(1)      <---------AHL20(2)                      --------->ALFIN1  --------->MYB111(2)      <-----------HVH21        --------->AHL20(2)                     --------->REM1(2)  <---------MYB46(3)      <------MYB46(1)         --------->YAB1                    <---------MYB52(1)  --------->MYB111(1)     <------MYB83           --------->ICU4                    --------->ALFIN1   =========================MYC_MYB----------->GT1 <---------YAB1                  <---------ANAC46     <---------MYB55(1)      <---------AtMYB61     --------->YAB1              --------->DAG2 <----------DOF2<-------TEIL       --------->MYB59  --------->AHL20(1)   <---------YAB1 <---------ANAC58     <--------P     <---------TGA1a<------NtERF2 --------->AHL20(2)   --------->ICU4 <---------ANAC58    <---------MYB52(1)  <---------YAB1        --------->AHL20(2) -ANAC46     ---------->DOF2 ===================================bZIP_DOF        <---------AHL20(2)   atgtgatgatgaagaaaaagccgtgtggtcgcttttgtctggttggtacatgtctcacttgtgatttggtcgggggaaaaaataaaataataataaataa  22360500                                                                                                    <                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                        ------>ZmHOX2a(1)                                                                                       --------->TOE2(3)                                                             --------->ARR14(2)     --------->ARR14(2)                                                   ---------->DOF2                  <---------ARR14(2)      <---------TGA1a                            --------->ANAC58                  <---------CCA1(2)<      --------->TGA1a                            --------->ANAC58                  --------->GLK1(1)< ------GT1                           --------->AHL20(2)      <---------ARR14(2)    <---------GLK1(1)<   catgtctcacttgtgagaaactataaacctccaaaaaaaaaaaattcaagaacgaaagagaaggaaccgatacaattagtcgcacatatccttcatagag  22360600  ----------->HVH21  ----------->TGA1                                                                                --- ---------ANAC46                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <----------DOF2 ---------ANAC58                                 <---------TOE2(3)                    xxxxxxxxxxxxxxx --------MYB46(3)                       <------MYB46(1)                --------->ARR11(3)       ----- ------->MYB55(2)                       <------MYB83                   <---------ARR11(3)     <xxxxxx ---------ANAC58          <---------TOE2(3)    <---------AHL20(2)  xxxxxxxxxxxxxxxx>smallRNA(i) <---- ------MYB46(1)          <-----------GT1----------->GT1         <---------ZAT6      --------->ARR11(3) ------MYB83       <----------DOF2     --------->MYB59    --------->ZAT6            <---------ARR11(3)   ttgggtgacgatatagatagtcttttttgacgatatagagttgggttatttaagtttgtatcagtagtctaaacatcttagaagcaggtctttttgggat  22360700                                 <---------ARR14(2)                               <---------SPL7                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  ------>ZmHOX2a(2)                  ===================================HOX2a_HOX2a                 ====================================HOX2a_HOX2a                 <------ZmHOX2a(2)                <---------ARR14(2)                --------->ARR11(3)                          <------NtERF2                --------->ARR14(2)                        <---------ANAC58             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <---------ANAC46             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------DEAR3(1)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------ANAC58           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <---------LBD16           <-----------HVH21  <---------ANAC58       <----------DOF2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ANAC46     ====================HOX2a_HOX2a         --------->TOE2(3)     ------>ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->LBD16                         --     ===================HOX2a_HOX2a         xxxxxxxxxxxxxxxx>smallRNA(s)                           <-   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    xxxx ------>ALFIN1  <---------GLK1(2)--------->ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(s)                 <--- x>smallRNA(i)  --------->AGP1<---------ANAC58    --------->ARR11(3)                          <------NtERF2 ---->ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ARR11(3)                         -------- xxxxxxxxxxxxxxsmallRNA(fl3)  <---------ANAC46------>ZmHOX2a(1)     ----------->GT1         <-------- -----bZIP60(2) <---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   gtggctccttccccatcagatccttggtcttggcgtatgctcttgttccttagacctttggcggagcaatttgttaaatgcaacttgggtaatggccgca  22360800                                                                                                    <                                                                                                    <                                                                                                    <           <---------ANAC58                                                                         -           <---------AtLEC2                                                                        --        --------->HSFB2a(2)                                            <------ZmHOX2a(2)           <-  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ZAT18                             <---------TOE1(3)        <---------ARR11(3)        <xxxx --------->ZAT18        <xxxxxxxxxxxxxxxxsmallRNA(i)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------->At4g35610>>>>>>>>>TAC1              <---------TOE2(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------At4g35610<-------GAMYB            ---------->DOF2 <---------ICU4                       <xxxx xxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->At4g35610  --------->ICU4              xxxxxxxxxxxxxxx ------CCA1(2)------------>AtMYB77   <---------At4g35610  <---------YAB1          <xxxxxxxxxxxxxxxxxx ->RAP2.6(2) ----------->HVH21       <------NtERF2   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   --------->ZAT6 -RAP2.6(2)<---------ANAC58   <---------MYB52(1)   <---------ANAC46  <---------At4g35610<xxxxxxxxxxxx   tagctcacttctggcatgacagttggacttcccttggcccgctgataaaggttatgggtgattatggctccagatcacttcgcatccctcttaacgctag  22360900  Previous    Next  AGI:  At1g60710.1    Description:  ATB2; oxidoreductase. similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT1G60730.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45271.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) Range:  from: 22358418    to: 22360426    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g60720.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33710.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706) Range:  from: 22360737    to: 22361606    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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