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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ATHB12
--------->
GLK1(2)
--------->
KAN4(2)
<---------
HSFB2a(1)
--------->
ARR11(3)
--------->
HSFB2a(1)
--------->
AHL20(1)
--------->
KAN4(1)
<---------
CCA1(2)
<---------
KAN4(1)
<---------
ARR14(2)
<---------
CCA1(2)
<------
ZmHOX2a(1)
--------->
ARR14(2)
---------->
ARF1
<---------
ZAT6
<----------
TaMYB80
<---------
GLK1(2)
<---------
CCA1(2)
>
ANAC58
<---------
WOX13(1)
<---------
ARR14(2)
--------->
ARR11(3)
<---------
ANAC46
>
ANAC58
<---------
ANAC58
---------->
TaMYB80
<---------
ARR11(3)
<---------
ANAC58
>
ANAC46
<---------
ANAC58
<---------
KAN4(2)
----------->
ARR10
<---------
ANAC58
aaatttcatgtattgagtgatagaatataggaatattctgttacaatcaagtagatactcgtatatattgtttcttgtatcccatattttgttgaacttc
16505500
<---------
ATHB12
<---------
AHL20(2)
------->
TEIL
<---------------
AGL15
<---------
ATHB12
<---------
MYB52(2)
<---------
YAB1
<---------
MYB52(1)
--------->
WOX13(1)
<---------
ICU4
<----------
DOF2
<----------
DOF2
----------->
GT1
-------->
ATHB1
---------->
CDC5
<---------
AHL20(2)
---------->
DOF2
--------->
WOX13(1)
--------->
ICU4
<------
NtERF2
<-----
tatgtaattcctttagctatttaaagtcttgtaaatcaatgaatcccttgagagaattattccactaacatggtattagggcctcatcgcttttgatttt
16505600
<------
NtERF2
<---------
AHL20(2)
------>
NtERF2
<----------
DOF2
<---------
AHL20(2)
--------
--------->
REM1(1)
--------->
AHL20(2)
<---------
LBD16
<---------
At4g35610
<----------
DOF2
<---------
AHL20(1)
------->
PIF5
<-----------
GT1
<----------
DOF2
<----------
DOF2
--------->
WOX13(1)
<-------
PIF5
----
AHL20(2)
--------->
At4g35610
<----------
DOF2
<----------
DOF2
----------->
RAV1(2)
ttttttcttcgtcttccgcttcatcttctctttcattttctcttcctttctttcttctttcttttttcatcaattaatttcaatagatgcccctgcggca
16505700
<---------
YAB1
-------->
HAHB4
<------
MYB83
<---------
ICU4
<------
MYB46(1)
--------->
YAB1
<-------
TEIL
--------->
ICU4
------->
MYC2
<---------
YAB1
------->
MYC3
--------->
ICU4
<-------
PIF5
--------->
YAB1
<-------
MYC3
<---------
YAB1
<-------
MYC2
--------->
ARR11(3)
------->
PIF5
<---------
HSFB2a(2)
--------->
ALFIN1
------->
MYC4
--------->
TOE2(3)
--------->
HSFB2a(2)
<-----------
RAV1(1)
------->
TEIL
<---------
ZAT6
<---------
CCA1(2)
>>>>>>>
ZML2
<---------
ICU4
<---------
ANAC58
--------->
ANAC58
------>
MYB46(1)
<---------
HSFC1(1)
<---------
ANAC46
--------->
ANAC46
------>
MYB83
------>
ZmHOX2a(1)
<--------
HAHB4
<---------
ANAC46
->
LBD16
--------->
ANAC58
----------->
RAV1(1)
<---------
ATHB12
<---------
ARR11(3)
<---------
ANAC58
aatcagacacacgaacgtgcatttggtgttaccaacatcaaatctcacatcccactcatcctcgttctagatgatcataattatgatgtgtggcatgagt
16505800
<------
MYB83
<---------
bZIP60(2)
<---------
bZIP60(1)
--------->
bZIP60(1)
--------->
ZAT2
<---------
REM1(1)
<---------
ZAT2
<-----------
RAV1(1)
--------->
At4g35610
<------
MYB46(1)
<---------
At4g35610
<---------
ANAC46
==========================
RAV
----------->
RAV1(2)
<---------
ANAC58
<---------
O2
<-----------
RAV1(2)
<---------
ANAC58
--------->
O2
<-----------
RAV1(1)
<---------
ANAC58
--------->
YAB1
--------->
TGA1a
<---------
ETT(2)
============================
RAV
<---------
ALFIN1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
*
TSS
----------->
GT1
<------------
CBF
<---------
HSFB2a(2)
<---------
ANAC58
<---------
ICU4
------
<---------
ICU4
--------->
HSFB2a(2)
<----------
DOF2
<---------
ATHB12
<------
--------->
ATHB12
<---------
LBD16
<---------
ALFIN1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
ANAC58
<---------
TGA1a
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ICU4
<---------
ANAC55(2)
<---------
ANAC58
==========================================
bZIP_DOF
<---------
TOE2(3)
--------->
ANAC55(2)
tgtttcttactcattgcctcacgtttgatgttctggggcatctcgacaacactttgcttccagctgatgctaatg
atgtcgcttggtaaaaacgtgactg
16505900
<---------
YAB1
<---------
MYB52(1)
--------->
ANAC46
<---------
ANAC55(2)
--------->
ANAC55(2)
------>
ZmHOX2a(2)
--------->
ANAC58
<------
ZmHOX2a(2)
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
--------->
ANAC58
------>
ZmHOX2a(2)
--------->
ARR14(2)
--------->
ANAC55(2)
<----------
DOF2
<---------
ALFIN1
<---------
ARR11(3)
--------->
ANAC58
---
--------->
WRKY18(1)
<---------
ZAT18
<---------
ARR14(2)
<---------
ANAC55(2)
--------->
CCA1(2)
----->
HVH21
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
ARR11(3)
----------->
TGA1
<---------
ARR14(2)
---
WOX13(1)
<---------
AGP1
<---------
ALFIN1
----------->
HVH21
--------->
ARR14(2)
actggtcaagctttggatctatggcacacttgctccacctctgttccgatcttccttccaaactggtgacgcatcacgttatgtttggatacgagtagag
16506000
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ARR14(2)
=======================
HOX2a_HOX2a
<------
ZmHOX2a(1)
==========================
HOX2a_HOX2a
<---------
TOE2(2)
<---------
LBD16
<-----------
RAV1(2)
<
<---------
SPL7
--
<-------
TEIL
<--------
--------->
ZAT2
--------->
ARR14(2)
--------->
YAB1
------->
GAMYB
--------->
LBD16
<------
ZmHOX2a(2)
<-
<---------
At4g35610
--------->
TOE1(2)
------>
ZmHOX2a(2)
--------
------>
GLK1(2)
---------->
DOF2
--------->
At4g35610
--------->
SPL7
<---------
WOX13(1)
<---------
YAB1
aatcagtttcaaaacaataaagaagtaagagctattcagcttgacaacgagcttcgtacccaggatattggagattgatcgatccaagtttattatcaga
16506100
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
------->
TEIL
<---------
ATHB12
<---------
WRKY38(1)
<---------
ATHB12
--------->
YAB1
<---------
WRKY12
<----------
DOF2
------
ZmHOX2a(2)
<---------
ATHB12
--------->
WOX13(1)
<---------
ANAC58
------->
ARR11(3)
<---------
ANAC58
--------->
WRKY18(1)
<---------
ANAC58
-
YAB1
--------->
ARR14(2)
<-----------
HVH21
------->
TEIL
------
--------
ARR11(3)
<---------
ANAC58
--------->
LBD16
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
-
->
YAB1
<---------
ARR14(2)
<---------
LBD16
<-----------
HVH21
---------->
DOF2
agatcaaatcactcgccgatttgcttgccaatgttgatgctccggtcaatgaacgtaacttggtcatgtacttgcttaatggtcttagagaaaagtttga
16506200
<----
-----
<-------
<---------
ANAC58
--------->
ANAC58
<---------
ANAC58
--------->
bZIP60(2)
<------
ZmHOX2a(2)
--------->
REM1(1)
<---------
TOE2(3)
<---------
ARR11(3)
--------->
ANAC58
--------->
AHL20(2)
--------->
ARR11(3)
<---------
ALFIN1
<---------
AHL20(2)
<---------
ARR14(2)
--------->
ANAC46
<---------
YAB1
--------->
ARR14(2)
--------->
ANAC58
<---------
ICU4
------->
GAMYB
--------->
ANAC58
<---------
YAB1
--------->
MYB46(3)
--------->
ANAC46
--------->
ICU4
--------->
MYB52(1)
--------->
DAG2
--->
YAB1
--------->
YAB1
---------->
DOF2
-------->
YAB1
--------->
ANAC46
---------->
DOF2
<------
ZmHOX2a(1)
----------->
RAV1(1)
taacataattaatgtaatcaaacacaacgatccttgtccaacttagagaaaagtttgatgctggaactgtaggagagtcgtctcaaaaagccacaccacc
16506300
--------->
ATHB12
<---------
YAB1
<---------
ICU4
<----------
DOF2
--------->
KAN4(2)
--------->
At4g35610
<------
NtERF2
<------
ZmHOX2a(2)
<---------
At4g35610
------>
NtERF2
---
<---------
YAB1
--------->
ZAT2
--------->
DEAR3(1)
------->
GAMYB
--------->
ANAC46
<---------
ZAT2
<-----------
HVH21
--------->
MYB46(3)
------->
GAMYB
<---------
ALFIN1
--------->
ABI4(1)
------>
MYB83
<
--------->
ANAC46
--------->
AtMYB61
------>
NtERF2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ANAC58
--------->
MYB46(3)
--------->
DREB2C(2)
------>
MYB46(1)
--------->
ANAC58
-------->
P
<---------
YAB1
--------->
DEAR3(1)
----------->
RAV1(1)
-----
DAG2
--------->
YAB1
--------->
WOX13(1)
--------->
DEAR3(2)
--------->
MYB52(1)
---->
TOE2(3)
------->
GAMYB
--------->
MYB46(3)
--------->
ORA47(2)
--------->
AtMYB61
--
ALFIN1
--------->
MYB46(3)
------->
GAMYB
--------->
MYB46(3)
<---------
ATHB12
<---
ttattgcaacccacaacgatcattcttcatcaaccacagctctcaccattgctcttgcaccgccagcgctttgttcatcaaatcaacaccaacagtccaa
16506400
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AGI:
At1g43725.1
Description:
transposable element gene. copia-like retrotransposon family, has a 1.2e-107 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element)
Range:
from: 16505876
to: 16509908
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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