Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   --------->HSFB2a(2)                                                              <----------DOF2             <-----------GT1                              <---------ANAC58        <---------ZAT14                  ----------->GT1  <---------ANAC58         --------->DAG2        --------->ZAT14              <-------TEIL     <---------MYB52(1)         ==================== ----------->RAV1(2)           --------->ETT(2) --------->ARR11(3)               ---------->DOF2 ----At4g35610            <---------ANAC46      <---------ARR11(3)  <---------GLK1(2)             --- --->At4g35610 <---------YAB1--------->REM1(2)  --------->GLK1(2)<---------HSFB2a(2)            <----   acagcctgagcgtagtcacgattccccatcgtgtagacatacatggagaaaatctcgttggcttctttcagaaactcgtgaacaaaaggtcgaagtttta  7034500                         --------->ARR11(3)                         <---------ARR14(3)                         --------->ARR14(3)                         <---------ARR11(3)                         <-----------ARR10                         --------->ARR14(2)                                   --------->At5g28300                         <---------ARR14(2)                                   --------->LBD16              --------->ANAC55(2)                                            <---------ANAC46              <---------TGA1a                                                ----------->GT1              <---------O2                                               --------->GLK1(1)          <-----------HVH21------>ZmHOX2a(2)                             <---------GLK1(1)   <---------CCA1(2)     --------->AGP1                               <---------HSFB2a(2) <---------GLK1(2)     ----------->ARR10                              --------->HSFB2a(2) =======================bZIP_DOF                                    <---------LBD16  --------->YAB1 ------>YAB1  --------->O2<------ZmHOX2a(2)                        ------>ZmHOX2a(1)<---------ATHB12 -------GT1   <---------ANAC55(2)    --------->GLK1(2) <---------GLK1(2)---------->DOF2<---------YAB1   tcagcatctctctgtcaagtgtccaaagatcttccctaaaatctgactctcccaatagatacttctctccttcggaaagccgtgaaatcataatagaatg  7034600                                                                                          <----------DOF2                                                                                    --------->MYB52(1)                                                                                 --------->ANAC58                                                                                 --------->ANAC58                 <<<<<<<<<WRKY18                          <---------ANAC46       ------->GAMYB                --------->WRKY18(1)                --------->ANAC58              --------->RAP2.6(2)              --------->ANAC46                <---------TOE2(3)                  --------->ANAC46       --------->ALFIN1                 --------------->AGL15                   --------->MYB46(3)       <---------AtMYB61               <-----------------AG  --------->ZAT14    <------------AtMYB77     --------->ALFIN1             <----------DOF2  --------->ANAC58            <---------At5g28300<--   <---------ANAC58            ------->TEIL   <---------TOE1(3)          <----------DOF2  <---------DAG2   <---------ANAC46         <---------REM1(1)---------->DOF2<---------ANAC46  <-----------GT1    <---   <---------ANAC58  <------ZmHOX2a(1) <-----------------AGL1<---------ZAT14  --------->ARR14(2) <---   gagaagcgtgtggtccaagtcaaggactagatgaagctttctctcgttaaggcaagcgagttgtgtagtaaggctctttgtaaccgcaacggctttatgg  7034700                                                                                     ------->GAMYB                                                                                     <---------SPL7                                                                                    <---------MYB52(2)                                                                                  --------->MYB52(1)                                                                                 ----------->HVH21                                                                                --------->LBD16                                                                               <---------ANAC58                                                                               <---------ANAC58                                                                           <---------GLK1(2)                                                                           <---------ARR14(2)                                                                           --------->ARR14(2)                                                                          --------->At4g35610                                                                       --------->At4g35610                                                                       <---------At4g35610      <-----------GT1                                       ------>ZmHOX2a(2)  <---------ANAC55(2)   --------->YAB1                                         --------->ARR14(2)   --------->ANAC55(2) --------DOF2                                             <---------ARR14(2)--------->GLK1(2) ------ANAC58                      ------>NtERF2 --------->ETT(2)   ---------->DOF2 --------->MYB46(3) ------ANAC58       <---------ARR11(3)           <---------ETT(2)   <---------At5g28300         -----   cttaattgtaacccatggacgagataatcgaatgctcggccgtagtctctgtctaccgtcgatctgcagttacagcagattccgtaacggacgaagaagt  7034800                                  >>>>>>>ZML2                                  <---------HSFC1(1)                                  --------->HSFC1(1)           <---------MYB52(1)      <----------DOF2                         --------->GLK1(2)          --------->YAB1             <---------ARR14(2)          <-----------RAV1(1)     --------->HSFB2a(2)         --------->TOE2(3)--------->ARR14(2)         <---------TOE2(3)        <---------HSFB2a(2)---------->DOF2          --------->GLK1(1)<----- <---------At4g35610    <---------GLK1(2)          <---------ATHB12       <-----------GT1    <------- ------>HVH21           <---------ARR14(2)       --------->WOX13(1)  <---------YAB1------>ZmHOX2a(1)<   gaccgcagattaatgttgctgttttggattctggttctagacatgagttttcaatcaaagacatcgttagtctgattcacaaatcctcgttttatcgtag  7034900                                                                                                 <---                                                        <---------PCF2                          <----                                                     --------->ALFIN1                           -----                                     <---------YAB1<---------O2                                <-----                            <---------SPL7--------->ANAC46                  <---------YAB1  ---------                           <---------ANAC58        ======================bZIP_DOF         <---------TGA1a              ===============================================bZIP_DOF    <----------DOF2  <---------O2              ---------->DOF2 --------->SPL7       <---------TGA1a<---------ANAC58   <---------------          --------->YAB1   <---------ANAC58        <---------ANAC46      ===========================bZIP_DOF    <----------DOF2        --------->ANAC55(2)--------->ANAC58<----------DOF2    --------->TOE2(3)--- ----TOE1(2)<---------YAB1 <---------ANAC46   --------->ANAC58======================================bZIP_DOF --SPL7 <-----------TBP   --------------->AtSPL3   --------->ALFIN1     <---------DAG2--------->MYB46(3) ---------ALFIN1          --------------->AtSPL8   --------->O2   <---------ANAC58  --------->MYB52(1)   ggacacctttatttataaaagaaaattttgcgtaccattcttattcgcaagcgatgtgggactcctttgcttagccttttgattcttaaccgatgtggga  7035000                                 <---------TOE2(3)                                 <---------TOE1(3)      --------->MYB46(3)  --------->AHL20(2)    <-----------GT1       --------->ATHB51 ---ZmHOX2a(2)           <---------MYB52(1)                       --------->ARR11(3) -----ARR14(2)           <---------YAB1                           --------->AHL20(1)                - ---->ARR14(2)           --------->ICU4         --------->ATHB51  <---------AHL20(1)               -- ----PCF2           <-----------GT1    <---------YAB1<---------YAB1                                <- >ALFIN1      --------->ICU4<---------YAB1<-----------GT1    --------->AHL20(2) --------->ALFIN1   -- --AGL1      --------->TOE2(3)<---------AHL20(2)--------->AHL20(2)<---------ARR11(3)        --------- --->ZmHOX2a(2)  <---------YAB1 ---------->DOF2<---------MYB52(1)--------->AHL20(2)         <--------   tccgtttaacaactacattattaaaccattattttaaagttatttttccattattttgatggaataaatatatcaagtacaagtgtagaactacagatga  7035100          <------------CBF                                                         xxxxxxxxxxxxxxxxxx        <---------AHL20(2)                                                        xxxxxxxxxxxxxxxxxxx       --------->AHL20(2)                                                        ------>ZmHOX2a(1)   <---------AHL20(2)                                                  <---------MYB52(1) -------->AHL20(1)                                                    <-----------HVH21 ------->AHL20(2)                                                     <-----------TGA1 --------AHL20(2)                                                    --------->ANAC55(2)<---------AHL20(2) ------->ATHB51      --------->YAB1                       ---------->ID1        --------->TOE1(2) --- >At4g35610  --------->YAB1               <-----------HVH21       <-----------GT1xxxxxxxxxxxxxxxxxxxx -At4g35610 ----------->GT1------------>CBF       <---------AHL20(2) --------->ANAC46 xxxxxxxxxxxxxxx   attattttataaaattgataatatcaaaatgcaatttagcaaaatgtcagttttaattttgttttttttttccgtcactaatcctactatattatttggg  7035200                                                            <---------AHL20(2)                                                           <---------AHL20(1)                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           xxxxxxxxxxxxxxxx>smallRNA(si3)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                         <---------TOE2(2) --------->AHL20(1)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                         xxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                         xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                    xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                    --------->AHL20(2)     --------->AHL20(2)                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                   xxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                <---------AHL20(2)         <---------AHL20(2)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                --------->AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                           <-------                 --------->TOE2(3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <-------         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ANAC58                  <xxxxxxxxxxxxxxxxxxxx        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-----------GT1        <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->ANAC58                 <---------AHL20(2)       --------->AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             --------->AHL20(2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->AHL20(1)       <---------AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              <---------AHL20(2)      <---------AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              <---------AHL20(1) xxxx>smallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              --------->AHL20(2) xxx>smallRNA(si3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------AHL20(2) -------->GT1 <-----------GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->AHL20(2)<----- >smallRNA(le3)  --------->TOE1(3)xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ----------->GT1   <----------DOF2 xxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   ---------->DOF2<---------AHL20(2)   aagtatattttaaatgtaaccttaatttttgtaagtaattacataggtatgccattagaaataaaattttaaagagtaaattaatttatctctttaagga  7035300                                --------->AHL20(2)                                <---------AHL20(2)                               --------->AHL20(1)                               <---------AHL20(2)                               <---------AHL20(1)                               --------->AHL20(2)                           --------->AHL20(1)                                   --------->YAB1                           --------->AHL20(2)                                  <---------ATHB12                           <---------AHL20(1)                                 ------>MYB46(1)                           <---------AHL20(2)                            <-----------GT1                          --------->AHL20(2)                          --------->YAB1                          <---------AHL20(2)                        --------->AHL20(2)                      <---------AHL20(1)                            --------->AHL20(1)                      --------->AHL20(1)                       ======================================   ----------->GT1    --------->AHL20(2)                       --------------->AGL15  --------->DAG2      <---------AHL20(2)                 <---------AHL20(2)   ------>MYB83 ---------->DOF2  --------->AHL20(2)                    <---------AHL20(2)   --------->WOX13(1) --TOE2(3)        <---------AHL20(2)                --------->ICU4 --------->YAB1                   < --TOE1(3)       <---------AHL20(1)              <-------TEIL  <---------------AGL15               -- xxxsmallRNA(si3)--------->AHL20(2) --------->AHL20(2)  --------->AHL20(2) --------->MYB46(3)    ---- -ZmHOX2a(1)     <---------AHL20(2) <---------AHL20(2) <---------YAB1 <---------ICU4             <---   ttaaaaagtcaaatactaatttaattaattaaatttaattaaaaaacaaaatacattattaatttccaaaaataataaccaatcaaaatcaacatataag  7035400  Previous    Next  AGI:  At1g20320.1    Description:  NLI interacting factor (NIF) family protein. similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT5G54210.1); similar to Os05g0390500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055440.1); similar to hypothetical protein OsJ_017664 [Oryza sativa (japonica cultivar-group)] (GB:EAZ34181.1); similar to hypothetical protein OsI_019147 [Oryza sativa (indica cultivar-group)] (GB:EAY97914.1); contains InterPro domain NLI interacting factor (InterPro:IPR004274); contains InterPro domain FCP1-like phosphatase, phosphatase domain; (InterPro:IPR011947) Range:  from: 7033647    to: 7034864    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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