AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<--------ATHB1 <----------DOF2 ----------->GT1 ---------->DOF2 --->TEIL ------->TEIL -------->HAHB4 ----------->GT1 ---
aactggctttttttatgaagatgtatatcaagaaatgataataattcatagaagaaaaaatgataattataaagaagtagaccctaaaataaatagttaa	5602500
<------NtERF2 --------->ALFIN1 <------NtERF2 <------ZmHOX2a(2) <-------GAMYB --------->ALFIN1 --------->ALFIN1 ------>ZmHOX2a(1) ---------->DOF2 <---------PCF5 <---------ABI4(1) ============== ---->GAMYB --------->ALFIN1 ------->GAMYB ==============
ccccaaagtggttgagtgggggatcacatgcagcaaattaacggcggtggggaagaaggtctgagaaattaaccaagagatggctcatcctcagccattc	5602600
<--------HAHB4 ------>ZmHOX2a(2) <------ZmHOX2a(2) =====================HOX2a_HOX2a ------>NtERF2 ====================HOX2a_HOX2a <-----------GT1 <----------ID1
acttagccatcgagagatctcaaacccattaatcatttaacttactgaacatatctaataaatgtgtgtttatatatgtaatgagttagacgccaaaaat	5602700
------>ZmHOX2a(1) ------>ZmHOX2a(2) <------ZmHOX2a(2) ==================HOX2a_HOX2a ------------>CBF ===================HOX2a_HOX2a <------ZmHOX2a(2) ------>ZmHOX2a(1) <-----------HVH21 ------------>CBF <-----------GT1
aaattatagactagagacatgtcctgctagctggatcctagtcatcacggtctcacgagcagtattgcatccaattttcgatcacaatatttacaaaaaa	5602800
>>>>>>>>>MYB98 ----------->GT1 ----------->TBP <------------CBF *TSS --------------->AGL15 --------->AtLEC2 ---------->DOF2 ======================================================================== <---------ALFIN1 <---------------AGL15 <------------CBF ---------->DOF2
ttcccaccactctaaagttgtagtttattctctatatatagagtaacataaattgattggacatgcaaatcaagtcaaacataaaagtaaacaaaaccct	5602900
------>NtERF2 --------------->AGL15 <---------------AGL15 ------>ZmHOX2a(2) ------>ZmHOX2a(1) ===============HOX2a_HOX2a <-----------------AGL2 ------>NtERF2 ----------------->AGL3 ------>NtERF2 <------ZmHOX2a(1) <-----------------AGL3 ------>NtERF2 <-----------ARR10 ================HOX2a_HOX2a =====================MADS_MADS <------NtERF2 <-----------HVH21 <------ZmHOX2a(2)----
atctcttcctatatatggccgactcgactcggccgcttctctcagatttcaactcgtccgagtcaaatcttccgccaccaagatcccttgaggagacgat	5603000
<-------TEIL <-------TEIL <---------PCF2 ------->GAMYB ------>DOF2 --------->ALFIN1 <----------DOF2 =====================
agagcgatgcattggagacttcgggtgggcacagtttctccaagccgctttagtctcattcgcttggttcttcgacgctcaacaaacattcatcaccgtc	5603100
----------->HVH21 --------->TGA1a -------->P --------->O2 <---------ALFIN1 ======== <-----------RAV1(1) ------>ZmHOX2a(1) ========== <---------O2 ------>ZmHOX2a(1) -------->P <---------TGA1a <---------ALFIN1 ------->TEIL ------->GAMYB =========================MYC_MYB ----------->HVH21 ----------->RAV1(1) <---------ALFIN1 ----
ttcaccgactcacaacccatgtggcactgtgacaactcggaccgagtcgactcagtatgcaacacatcctcctccaacctctgcaccttacccaaccaaa	5603200
<---------O2 --------->O2 <---------TGA1a --------->TGA1a <---------ALFIN1 ------->TEIL <--------HAHB4 ------>ZmHOX2a(1) ===============================MYC_MYB ------>NtERF2 <------NtERF2 ===============================MYC_MYB <---------PCF2 ------>NtERF2 ------->RAV1(2) <---------ALFIN1 --------->ALFIN1 <------NtERF2 ------>ZmHOX2a(1)--
cctggtcttgggacttgaacccacacgtttcaatcatttccgagtgggggctacaatgcgccggctcgttcctcaagggatttcctgcaagctcattctt	5603300
<------NtERF2 ------>NtERF2 ---->ZmHOX2a(1)------>NtERF2 <---------ALFIN1
cctcggctgtctaatcggcggcttagctctctctacactcgccgactcatcgctcggtcgtaagaacatgctcttgttgtcgtgtctcataatgtctctc	5603400

AGI:	At1g16390.1
Description:	ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER2); carbohydrate transmembrane transporter/ sugar:hydrogen ion symporter. similar to ATOCT2 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER2), carbohydrate transmembrane transporter/ sugar:hydrogen ion symporter [Arabidopsis thaliana] (TAIR:AT1G79360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64952.1); contains InterPro domain Major facilitator superfamily MFS-1 (InterPro:IPR011701); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain MFS general substrate transporter (InterPro:IPR016196)
Range:	from: 5602867	to: 5604657	Orientation: Forward
Links:	TAIR MIPS

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