AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
<-----------GT1 <-----------GT1 ---HVH21 ------>ZmHOX2a(1) ------ ---TGA1 ----------->RAV1(2)<-----------GT1 ------->GAMYB <---------ALFIN1
ttttttctgaatgttataatatgtcaattttcctgaaacgaaaccttattaacattcttgcacaacaggctactcttagggtttaagtgcacactcgtaa	5601000
<-----------GT1 <---- ----------->GT1 <---------------AtSPL8 ------->TEIL ---->DOF2 ----------->GT1 --------------->AtSPL8 <---------AtLEC2
agttcagggagtaaattttgtaaaaaaaatagaaatcatggatactataataaaacgtcaatttatgagtactataataacgattttgtgcatgaatttt	5601100
-------GT1 <-----------GT1 <------ZmHOX2a(1) <----------DOF2 ---------->DOF2 <-----------GT1
acttgggtttgggtttcactatcatagagtttaggagtcaaattgcgaaaactttaaaacaaaaaaaaaagtgtttagaaagtattttttaacaaaactt	5601200
<---------PCF5 ----------->HVH21 ------->GAMYB <------ZmHOX2a(1) <-----------ARR10 ----------->RAV1(1)
acgagaatctgggcaacgggaccggcttggccacagggttttaggaataggtagaagaattgagagaagacgagaatgcaagccatttgaataaacattg	5601300
------>ZmHOX2a(2) ------>ZmHOX2a(1) <-------TEIL ====================================HOX2a_HOX2a ===================================HOX2a_HOX2a --- ------->TEIL <------ZmHOX2a(2) ---------- ----------->GT1 <-----------------AGL1 <----------DOF2 ---------->DOF2
tattgagtggattaaacaatgcatctccttctggcaaacaaaacaacatctttggatccattttcttgattcgattttgagcattcttcaaagttcaatg	5601400
---------->DOF2 -------->GT1 ------------>CBF <--------P -->CBF ---------->DOF2 ------>ZmHOX2a(1) <-----------GT1 <-------GAMYB
cgggaaaaataaaatgtgaaagaaacttcaatttctcctaaaaagaagaatatatatttttcaggttttttaagtattaatttatcttggttggagttta	5601500
<-----------GT1 < ------>ZmHOX2a(1) <<<<<<<<<<GT-3b --------- <-----------GT1 <-----------GT1 <-----------GT1 --
aggggtttacatttacctgattatccttcgattactccatgcctctgttttacgccatttatttttcttgtcgacacatttaattttccccattaaaagc	5601600
--------------->AGL15 <---------------AGL15 <-----------------AGL1 <-----------------AGL3 <-----------------AGL2 ----------------->AG ----------------->AGL2 <------------CBF ----------TaMYB80 <---------AtLEC2 ----------->GT1 ->DOF2 <-----------------AG -------->ATHB1 ---------->DOF2 --------->ALFIN1 -------->TaMYB80 <-------TEIL <--------P ---------->DOF2
ggatatacttactataatcggaaaatgcatgaattattggagtaggtttaaaggagtaagtttttgtttttgtaagataatagaaaagtgtcgatttcag	5601700
<-----------GT1 ------->GAMYB ---------->DOF2 ---------->DOF2 ----------->GT1 <--------ATHB1 ---------
caagaaaactatgtagacttaatattttcaaaagtattaattaacattgcatccaacggaaaaaaaaaaaaaagcaataattttttgtcaaggaaaaagt	5601800
----------->GT1 <----------DOF2 <--------HAHB4 ->DOF2 ------->TEIL <-----------GT1 ------->TEIL
atagcttttatgtatgtaaaattgtattgtactaaatgtatgaattaaattaacaggtatacgtcaaattatcattacaacttgtatctaattgttactt	5601900

AGI:	At1g16380.1
Description:	ATCHX1 (CATION/H+ EXCHANGER 1); monovalent cation:proton antiporter. similar to ATCHX2 (CATION/H+ EXCHANGER 2), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT1G79400.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74725.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67417.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153)
Range:	from: 5598447	to: 5601361	Orientation: Reverse
Links:	TAIR MIPS

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