AthaMap

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Position

Exon region

Intron region

UTR region

AGI

% Restriction to highly conserved binding sites (0-100)

1 10 20 30 40 50 60 70 80 90 100
----------->HVH21 ------>NtERF2 ------O2 ----------->HVH21 ---->TGA1 <-----------HVH21 ------->TEIL ---->HVH21 --------->ALFIN1 <----------DOF2
cgacgcccatcgacggtggtgcggtcatgaccgagtccaatctggctgtagctagcaccaagattgaatagaacagctgctttctccaaatgaatgttct	5209500
----------->HVH21 <---------AtLEC2 <-------GAMYB <-----------RAV1(2) <----------DOF2 <------NtERF2 <-----------HVH21 <----------DOF2 ---------->DOF2 ---------->DOF2 ------>ZmHOX2a(2)
gctgagtagctttatgcttttgcttgaaagcatcgtaccatacgaaagagacggcgttgacatgatccttgtcaggggaaattggaaatcgcgtctccac	5209600
------>ZmHOX2a(2) <----------DOF2 <------ZmHOX2a(1) ------>ZmHOX2a(2) =================================HOX2a_HOX2a <----------DOF2 ----------->RAV1(2) <------ZmHOX2a(2) ---------->DOF2 <------ZmHOX2a(1) ------>NtERF2 ================================HOX2a_HOX2a
aagacaaagaactttgtaataggagatgagaaggtctcgccgagcagctggagaaggatcggaaacgcgttctatatcggatcggagctgcttcaaggtc	5209700
------->GAMYB ----------->RAV1(2) <------ZmHOX2a(2) ------>ZmHOX2a(2) ---------->DOF2 <------ZmHOX2a(1) <------ZmHOX2a(2) <--------P ==================HOX2a_HOX2a
tcgagatcgtcgtctataagctgagcctcgcgctcagagtaggtgaaagtaacgtagttgcggagaggacggtagagatcaacggagctcgtcttcttct	5209800
<----------DOF2 ------>ZmHOX2a(1) <-----------GT1 ===============HOX2a_HOX2a <-------GAMYB ------>ZmHOX2a(2) <-------
catgaatggcgagcatcagattagagagcgaagaagaagccatggcggttcaaaatcctcttcgatcgctcttccgatttttctaattttcttcgatttt	5209900
------>ZmHOX2a(2) <------------CBF ============================HOX2a_HOX2a =============================HOX2a_HOX2a ------>ZmHOX2a(1) =====================================HOX2a_HOX2a <------ZmHOX2a(2) <------ZmHOX2a(1) ------>ZmHOX2a(1) ------->TEIL ------>ZmHOX2a(2) ------>NtERF2 ------>ZmHOX2a(2)--------- ---DOF2 *TSS------>ZmHOX2a(2) ==============HOX2a_HOX2a =============HOX2a_HOX2a
tggtttccttgatggatccttattgactaagagaagatgatcgtgaaggatcgtgagaacgacaccaagtcctgtgatcttctatgaaaacggcgtgcag	5210000
---- <----------DOF2 ------ <-----------GT1 ------ >>>>>>>>>GT-1 <----------DOF2 <----------DOF2 ----------->GT1 ====== >ALFIN1 ----------->GT1 <------ZmHOX2a(2) <-----------GT1 <-----------RAV1(1) <---------
tctaatttagtggttaatacagtcgatcaatggcttttaagcttttttccgcgttaattaaatgtggcaacgatggtgatttattttgtggaacttttcc	5210100
-->ZmHOX2a(1) ----------->AG ---------->DOF2 ----------->AGL1 --------------->AGL15 ================================================================================MADS_MADS ----------- -DOF2 <-----------GT1 <---------------AGL15 ---------->DOF2
taattagaaacatgtctaattcacaatattttttggtataaatcttcttggtatatgtagaaattttctattgaaagtagaagaaatatgcaaagtatat	5210200
----------->HVH21 <-----------RAV1(1) >GT1 ---------->DOF2
agagcatggacattaacatgatcactaatcaaaaaagaatgttgtggtgacaatcaacacagtagtattaatttttaagggactacaaaattctgtgtgt	5210300
---------->DOF2 <----------DOF2 <<<<<< <------ZmHOX2a(1) ----------->GT1 <-------
ttatgaattagagaggccttgaagaggactttcgtatcaaaagaataatgatgtgaagaaacagtaaaattatacgataatacaagaactatatctgtca	5210400

AGI:	At1g15130.1
Description:	hydroxyproline-rich glycoprotein family protein. similar to ALG2-interacting protein X [Nicotiana tabacum] (GB:BAD15108.1); similar to hypothetical protein OsI_033019 [Oryza sativa (indica cultivar-group)] (GB:EAY79060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42232.1); contains InterPro domain BRO1 (InterPro:IPR004328); contains InterPro domain t-SNARE; (InterPro:IPR010989)
Range:	from: 5205997	to: 5209910	Orientation: Reverse
Links:	TAIR MIPS

AGI:	At1g15140.1
Description:	oxidoreductase NAD-binding domain-containing protein. similar to ATLFNR2 (LEAF FNR 2), poly(U) binding [Arabidopsis thaliana] (TAIR:AT1G20020.3); similar to ATLFNR2 (LEAF FNR 2), NADPH dehydrogenase/ oxidoreductase/ poly(U) binding [Arabidopsis thaliana] (TAIR:AT1G20020.1); similar to ATLFNR2 (LEAF FNR 2), poly(U) binding [Arabidopsis thaliana] (TAIR:AT1G20020.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO42229.1); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Pheno
Range:	from: 5210201	to: 5212344	Orientation: Reverse
Links:	TAIR MIPS

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