Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               --------->ANAC58                             --------->ANAC58         <---------ZAT6     <---------LBD16    <----------DOF2        --------->MYB52(1)   <---------DAG2         ----------->HVH21 -----------GT1         <---------At4g35610 ----------GT1          --------->At4g35610           <---------At4g35610               <------ZmHOX2a(1) ------HSFC1(2)       --------->ZAT18                 --------->At4g35610            --------->HSFC1(1) ----->HSFB2a(1)      --------->ZAT14     <------ZmHOX2a(2)                          --------->HSFB2a(2) ------HSFB2a(1)      <---------ZAT18    --------->ARR11(3)                          <---------HSFB2a(2) ----->HSFC1(2)       <---------ZAT14    <---------ARR11(3)    ---------->DOF2       <---------HSFC1(1)   atttcccttttgtgttatccagagtgcgctcacggatgctagagatcatgttcttgagatgactgaaaaggaagtagaaattttcttctaggagagacat  3465600                                                              <---------ANAC46                                                           ----------->TGA1                                                     --------->ATHB51                                                     --------->AHL20(2)--------->ATHB12                                                    <---------YAB1    --------->ICU4                                                    --------->ICU4    <---------YAB1                                          <---------MYB46(3)  <---------bZIP60(2)   ----------->GT1               <-----------HVH21       --------->MYB52(2)<---------ICU4-------->HAHB4          <-----            <----------DOF2          <---------MYB52(1)<---------YAB1 <---------ATHB12         <-----   tgaagtgaagaagactttgtcactctgtaattttgcaccattagttgttgtttcattatttatgacgttgaaatgattcaagcgagagataaaacatttg  3465700                              --------->ANAC58                              --------->ANAC46                 --------->AHL20(2)      --------->SPL7          --------->ANAC58     --------->MYB52(1)<---------AHL20(2)    <---------SPL7     <---------YAB1    ------>ZmHOX2a(1) --------->AHL20(2)               --------->WRKY38(1)                    <------   <---------ANAC58   <---------AHL20(2)               --------->WRKY45                      <-------   <---------ANAC58  --------->YAB1                 <---------ANAC46                      <------MYB46(1) ------RAV1(1)   <---------AHL20(2)       --------->AtLEC2      ---------->DOF2           <------MYB83 ----MYB46(3)   --------->AHL20(2)      <---------AtLEC2    --------->MYB52(1)      ---------->DOF2   ttgttccttacggtgagatttaattttaattcaaggaagttttcatgaaaaatggtgttgactaacaaaagagaggcattttaagtcaaagttggtcgtt  3465800                                                                                  <------------CBF                                                                                 --------->ATHB12                                                                               <---------------AGL15                                                                               <---------MYB59                                                                               --------------->AGL15                                                                              ----------------->AG                                                  --------->ARR14(2)          <-----------------AGL1                                           <------MYB83 <---------MYB52(1)    <-----------------AGL2    <------ZmHOX2a(1)                      <------MYB46(1)--------->MYB52(2)  ----------------->AGL1   <----------ID1                         --------->MYB59<-------TEIL      <---------WOX13(1)   ----------->GT1                        <---------AtMYB61<-------GAMYB  <------------CBF  <---------TOE2(3)                     <---------MYB52(1)<---------MYB46(3)  <-----------------AG -GAMYB                            <-----------GT1<---------GLK1(2)      --------->ARR14(2)       <-- --MYB46(3) <-------TEIL     ----------->GT1      <---------ARR14(2)     <---------ARR14(2)    ------   gaatgaggaaaaaattcattcggtttagaacaggttatttcggtttggttccgattcggttcgttgaaacgagcgtaattgcctaattggggtattcctg  3465900                                                                                                   --                                                                                                   --                                                                                                 <---                                                                                               ------                                                                                               <-----                                                                                              -------                                                                                             <-------                                                                                             <-------                                                                                             ------>NtERF2                                                                                            ---------                                                                     ---------->DOF2       <------NtERF2                                                                  --------->RAP2.6(2)      --------->ATERF1(1)                       --------->ZAT18                            ------>NtERF2            --------->DEAR4(2)                       <---------ZAT18                           <----------ID1            --------->RAP2.3(1)                    <------MYB46(1)                              --------->ATERF1(2)      <---------ATERF1(1)                    <---------ANAC46                   ----------->GT1                   <---------DEAR3(1)                    <------MYB83                     <----------ID1<------NtERF2         <---------ETT(2)                   --------->MYB55(2)             --------->DAG2 <---------ANAC46 <---------ARR14(2)                   <---------MYB46(3)            ---------->DOF2 <---------RAP2.6(2)    --------->SPL7                   --------->MYB46(2)       <---------ANAC46     <---------ATERF1(2)   <---------MYB52(1)  ---------->DOF2  --------->MYB111(1)      <---------ANAC55(1)  <---------DEAR3(1)    <-----------HVH21 --------DOF2      --------->MYB111(2)     <-----------------------TaNAC69(2)     --------->ARR14(2) >ZmHOX2a(1)       <---------AtMYB61      --------->CCA1(2)     --------->RAP2.6(3)--------->MYB52(1)   ctttgaaagacatatactagtttggtggacaaaactcgagtgagttacgagtaaagcgagaaaaatggcggcaaagcgagggagaaaccggtcgccgtct  3466000     --------->LBD16    <---------HSFB2a(2)    --------->ANAC58    --------->ANAC46    --------->ANAC58   <---------LBD16 --------->ARR14(2)         <--------P <---------ARR14(2)       ----------->GT1 ------->LBD16        <------NtERF2 --------->HVH21     --------->LBD16 ------LBD16        --------->LBD16 --->ARR14(2)      <---------LBD16                            <------NtERF2 ----ARR14(2) --------->KAN4(2)                             <---------ANAC46 -->ATERF1(1)<---------HSFB2a(1)                            --------->DEAR3(1)                   <--- ----HVH21   --------->HSFB2a(1)      --------->ATHB12      <---------DEAR3(1)                 <----- --ATERF1(1) <----------TaMYB80      <---------YAB1       <-----------HVH21 <-----------GT1  <------- >DEAR3(1)  <---------KAN4(2)      <---------AtLEC2  <---------ZAT14  <---------TOE1(2)      --------   ccggacccggaagggatgttcgccggaatggtagttttcatggttgaaatcggagtccagcgtcgtcgattgcaggttttactctgaaaattttgttcag  3466100                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                              <------                                                          --------->ANAC58                    -------                                               <---------AHL20(2)                             <------       <---------ANAC58                        <---------YAB1                                 -------       <---------ANAC58                    <----------DOF2--------->ANAC58                    <------     <-----------GT1                 --------->ARR11(3) <---------AtLEC2                      ------- ------ZAT6                          <---------ARR11(3) <---------ANAC58                      <------ ----ANAC46                     ------>ZmHOX2a(1)       <---------ANAC58                      ------- --ZAT14                       --------->TOE1(3)   <---------ICU4                      <---------AtLEC2 ->ZAT14                       --------->TOE2(3)   <-----------RAV1(1)    <-----------GT1   ---------   tgttattttacttgcatcatcttcgacaaatttccttaacatcttctttttaattgttgcatgctatgtctgtaattttctctctatttgaatgaagatc  3466200       --------->GLK1(2)  <---------At4g35610  --------->At4g35610 ------HSFB2a(2) ----->HSFB2a(2) ->ZmHOX2a(2) -ZmHOX2a(2) --->CCA1(2) -->AGP1<---------ZAT2 ---AGP1--------->ZAT2                         --------->MYB52(1) -->GLK1(2)                                    <---------DOF5.7(2) ---ARR14(3)            --------->ZAT18   ------>ZmHOX2a(2)                                      ==== -->ARR11(3)            --------->ZAT14  <------ZmHOX2a(2)                              <---------ARR11(3) ---ARR11(3)            <-------TEIL    --------->ARR14(2)                        <---------HSFB2a(2) -->ARR14(2)            <---------ZAT14 <---------ARR14(2)                        --------->HSFB2a(2) ---ARR14(2)         <---------ANAC58   --------->ARR11(3)           <---------ANAC58   <-----------ARR10 -->ARR14(3)         <---------ANAC58   <---------ARR11(3)     --------->YAB1  ------->TEIL      <--- -->ARR10  ----------->GT1      ------>ZmHOX2a(2)     ---------->DOF2<---------ANAC58   --------->ARR11(3)   tggaagcagaagctggttcaaatgggtgcagtgatcgaagaagatcgggtaacgaagaaagtcactcatgttcttgccatgaatctcgaagctcttctcc  3466300                                                 <---------ANAC58                                                 <---------ANAC58                                          <------MYB46(1)           ===============================MADS_MADS                                          <------MYB83              --------------->AGL15                                --------->At4g35610   <----------DOF2         <---------------AtSPL3 <---------At4g35610<---------MYB52(1)          <---------GLK1(1)        ---------->DOF2      <---------At5g28300---------->ID1      <---------------AGL15 ----------- ===================================================================================MADS_MADS       - --------------AG           <-----------GT1    <-----------GT1   <-----------GT1   --------------->AGL15   acaaatttgggaaagaacgtctctcgcattttacagcagtaagttggtttttcgttcttttcagtttttactaaaaaatggatttcgtcatatagaaaaa  3466400                                                             <-------TEIL                                                          <---------ANAC46                                                          <---------ANAC58                                                          <---------ANAC58                <-----------RAV1(1)                      <---------------AtSPL8         <-----------GT1                             --------->ATHB12                           <----   <----------DOF2 <---------ANAC46                 --------->AHL20(2)                  >>>>>>>>>>>>> >GT1 --------->YAB1 <-----------RAV1(1)            <---------AHL20(2)              <---------GLK1(2) -------->GLK1(2) <---------MYB52(1)       <---------YAB1--------->MYB59--------->TOE2(2)    <-------   acaatcttttataactatctgttgtgttgttcatgagttttctctacgattagattaattgggtacaagttttatctacgaatagagattatccagtgtt  3466500  Previous    Next  AGI:  At1g10510.1    Description:  EMB2004 (EMBRYO DEFECTIVE 2004); protein binding. similar to RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1), RAN GTPase activator [Arabidopsis thaliana] (TAIR:AT3G63130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40939.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 3461636    to: 3465787    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g10520.1    Description:  DNA polymerase lambda (POLL). similar to DNA polymerase lambda [Oryza sativa (japonica cultivar-group)] (GB:BAD18976.1); contains InterPro domain BRCT; (InterPro:IPR001357); contains InterPro domain DNA-directed DNA polymerase, family X, beta-like, N-terminal; (InterPro:IPR010996); contains InterPro domain DNA-directed DNA polymerase, family X, beta-like; (InterPro:IPR002008); contains InterPro domain DNA-directed DNA polymerase, family X; (InterPro:IPR002054) Range:  from: 3465965    to: 3469249    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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