Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->ARR14(2)                                                                                         <---------ARR14(2)                                                                                        <-------GAMYB                                                                                       <---------MYB46(3)                                                                                      <---------DEAR3(1)                                                                         <------ZmHOX2a(2)                                                                        --------->ARR14(2)                                                               --------->DEAR3(2)     <---------RAP2.6(2)                                                             <---------ARR14(2)    --------->DAG2             <---------YAB1                                  --------->ARR14(2)   ---------->DOF2    ---------->DOF2                                      <---------LBD16<---------ARR14(2) --------->AHL20(2)       --------->DAG2                 --------->TOE1(2)------>ZmHOX2a(2) ----->AHL20(2)    <------ZmHOX2a(1)                    ----------->RAV1(2)      ---------->DOF2 ->LBD16<------ZmHOX2a(1)---------->DOF2               ------->TEIL <---------At4g35610<---------DEAR3(2)   aaaataaaaaggactctcataggaaaataaagcagagcaattttgtgaatcaattcgaacctggaaccgaagcggatcgaacagaaaggcggtttctccg  3461200                                                                                              -------                                                                                           --------->ANAC58                                                                                  <----------DOF2                                                                                 ------>ZmHOX2a(2)                                                                                <------ZmHOX2a(2)                                                                                <---------RVE1(1)                                                                               --------->ARR14(2)                                                                               --------->ARR14(3)                                                                               --------->ARR11(3)                                                                               <---------ARR11(3)                                                        --------->ANAC46       <---------ARR14(2)                                 --------->ANAC58     ----------->RAV1(1)      <---------ARR14(3)           <-------TEIL          --------->ANAC58    --------->MYB46(3)       --------->GLK1(1) <---------TOE2(3)    ---------->DOF2           --------->ANAC46              <---------GLK1(1)------ <---------TOE1(3)----------->HVH21           <---------ANAC55(2)      <-----------RAV1(1) --------->ANAC58   attgaggttgagattcacatatgacaaagaaggaaacgaaatcgaattacatgaaaccacagaacgtagacttgtgttggagatctttagaccaagaaaa  3461300                                                                         <---------AHL20(2)        --                                                                     <------ZmHOX2a(1)          <----                                                                   <---------TOE2(3)            <----                      --------->HSFB2a(2)                      <---------At4g35610              <----                      <---------HSFB2a(2)  --------->At4g35610 --------->ZAT2                   <----                <---------YAB1         <---------ARR11(3)      --------->At4g35610             <-----              <---------ANAC46  --------->ANAC58               <---------ZAT2      <---------At4g35610 --->DOF2  --------->O2         --------->ANAC58             ------>NtERF2         --------->At4g35610 --->DAG2  <---------O2       ---------->DOF2               --------->DEAR3(1)     <---------ZAT2  <-   gttggatttgaagacgtcgtgattccagtagcgaaagccataatcttctgagaattgaatcgccgagctgaggaattaatctctctgctgattcaaatgc  3461400                                                                                      *TSS                                                                                     <---------WOX13(1)                                                                                   --------->ATHB12                                                                                <------MYB83                                                                                <------MYB46(1)                                                                               --------->MYB111(1) <---------ANAC46                                                              --------->MYB46(2) ------->REM1(2)                                                               --------->MYB111(2) -----ANAC46                                                ------->MYC3       --------->MYB59 -----ANAC55(1)              <---------ARR11(3)             <-------MYC3      <---------MYB55(1) -----ANAC58           <----------ID1                   --------->ZAT18       <--------P <---------YAB1 -----ANAC58      --------->YAB1<----------DOF2<---------AHL20(2)            <---------MYB52(1) ------------------TaNAC69(2)--------->ARR11(3)--------->AHL20(2)          <---------TOE2(3)<-------- --------ZAT14   <---------ATHB12     <---------AtLEC2  <---------ZAT18   <-----------RAV1(2)       -   gtgtagtagaagaagaccaatgaaaaaaacaaatctttttgcataacaattttttaagtccacatgttatttgttttcaggtaggtgattgattattttt  3461500                                                                                               ------                                                                                               ------                                                                        --------->ARR14(2)   <-------             --------->DAG2   ------->TEIL                              <---------ARR14(2) --------->SPL7            ---------->DOF2   --------->GLK1(2)                       <---------MYB46(3)   ------->TEIL    ------->TEIL              <---------ARR11(1)   <-----------GT1  <---------MYB52(1)  --------->ANAC46 -YAB1--------->TOE2(3)      <---------ARR14(1)  <---------AHL20(2)--------->LBD16  <---------ALFIN1 -------------->AtSPL8  <----------DOF2     --------->AHL20(2)   <---------LBD16<-----------HVH21   gttatgaaccctaataaagtcgttctctttcgaatctatcgggtcataaatttaaacccgatttcgacccggtggatagtcgggtcacacccgtacctaa  3461600                                                                             <----------DOF2 ---->DOF2       <---------ANAC46                <---------CCA1(2)       ---------->ID1           --- --->MYB52(1)---------->DOF2                <---------ICU4               <---------CCA1(2)       <--- --MYB59    --------->ANAC46        *TSS   <---------YAB1      --------->ANAC46              <-------   aggaatacacacacacatagcgcgaaggaaacaaacttcatcttcatcatcgtctcttctcttctactccaattcgtctcttttagtctcttacactttc  3461700              <---------MYB46(3)              <------MYB83                                  <---------At4g35610        <---------At4g35610              <------MYB46(1)                               <---------ZAT2             --------->At4g35610             <---------AtMYB61                              --------->At4g35610        <---------ZAT2          <---------MYB46(3)                                --------->ZAT2             --------->ZAT2          --------->MYB55(2)                             <---------At4g35610 <<<<<<<<<TBF1     <---------ZAT14                            --------->ANAC46        <---------ANAC58 --->ZmHOX2a(1) <<<<<<<<<MYB2                   --------->ANAC55(2)     <---------ANAC58 <---------ZAT18 ------MYB59<--------P--------->ANAC46          <---------ANAC58 ------>ZmHOX2a(1)   <---------ALFIN1 ---DOF2  --------->ATHB12                      <---------ANAC58--------->TOE2(3)    --------->MYB46(3)   ctaattcttcagtggttggttttcacacagcgagagtttcaagcgtctatgcgtaattaagcagctccttaatggcttcttcttccaccagctccctcaa  3461800                                                  <---------------AGL15                                               <-----------GT1                                               ---------->ID1                                   <----------DOF2=================================MADS_MADS                                   ------>ZmHOX2a(1)                       <---------MYB52(1)                          <---------ZAT6      <-----------GT1    <-----------------AGL3               ----------->GT1    --------->TOE2(3)          <---------At4g35610 <---------ALFIN1      <-----------GT1 ---------->ID1      <---------CCA1(2)   <----------DOF2   tctccactctctccccaaggtaattctactgttcatcctttgtttttttttcccaattcttgtagcttctaaattcggtttctttctctgtgaattttga  3461900                                                      --------->At4g35610                                                  <---------ANAC58                                        --------->ANAC58                                        --------->ANAC58                                       --------->SPL7 <---------At4g35610                                     <---------MYB52(1)     <---------MYB52(1)                                     <---------SPL7  ----------->ARR10                                    --------->LBD16 <--------P                                   --------->HSFB2a(2)--------->ZAT2                                   <---------HSFB2a(2)<---------ZAT2                                  <---------LBD16 <---------ANAC58             --------->MYB52(2)                                --------->ARR14(2)<---------ANAC46       <---------MYB52(1)             <------MYB46(1)    <---------ARR14(2)<------MYB83  --------->HSFC1(1)             <------MYB83      <---------PCF2     <------MYB46(1)   <---------ARR14(2)            --------->ALFIN1  <------MYB83       <---------MYB46(3) --------->ARR14(2)            ---           <--------P         <---------DEAR3(2) --------->MYB59<---------HSFC1(1)               <---           <<<<<<<<<MYB98     <------MYB46(1)    --------->MYB55(2)<------ZmHOX2a(1)      --------->ALFIN1           --------->ALFIN1 --------->ALFIN1 <-----------RAV1(1)--------->HSFB2a(2)     ------>ZmHOX2a(1)          <-------GAMYB   --------->ALFIN1   --------->ATHB12   <---------HSFB2a(2)   ----------->RAV1(2)   aggcttcttctgggttgggccaatggaagagtgggttccggtacgaattgttgggtagctccgtttctaggaaccgattgtttgtttctcctgtggtgat  3462000                                   <---------ANAC58                                   <---------ANAC58                                <---------DEAR3(1)                            ---------->DOF2                     --------->LBD16          <---------At4g35610                     ------>NtERF2 <---------ANAC46    --------->DEAR3(1)    <------ZmHOX2a(2)   --------->At4g35610 ------>YAB1       <---------LBD16<------NtERF2                                <------ZmHOX2a(1) ----TEIL         --------->MYB52(1)        <-----------RAV1(2)      ----------->GT1   --------->ANAC46   tcatcaccgaagtccgagacttccggcgatcaaagcggcgtataactcagatggaggctcgaagcgtagtagggtttataaggagtcacaagcggctagt  3462100  Previous    Next  AGI:  At1g10500.1    Description:  ATCPISCA (CHLOROPLAST-LOCALIZED ISCA-LIKE PROTEIN); structural molecule. Identical to Iron-sulfur assembly protein IscA, chloroplast precursor (ISCA) [Arabidopsis Thaliana] (GB:Q9XIK3;GB:Q6NM99); similar to hesB-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G03905.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96724.1); similar to unknown [Populus trichocarpa] (GB:ABK95383.1); contains InterPro domain HesB/YadR/YfhF; (InterPro:IPR016092); contains InterPro domain HesB/YadR/YfhF-like (InterPro:IPR000361) Range:  from: 3460001    to: 3461486    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g10510.1    Description:  EMB2004 (EMBRYO DEFECTIVE 2004); protein binding. similar to RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1), RAN GTPase activator [Arabidopsis thaliana] (TAIR:AT3G63130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40939.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 3461636    to: 3465787    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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