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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                    <---------DOF5.7(2)
                  <---------MYB52(1)
                  --------->DOF5.7(2)                                                    <xxxxxxxxxx
          --------->TOE2(3)                                                     --------->AHL20(2)
         --------->YAB1                                                        --------->YAB1
       --------->MYB52(1)                                          ----------->GT1      --------->ARR14(2)
     <---------MYB52(2) ----------->RAV1(2)                 --------->ALFIN1  --------->AHL20(2)<xxx
-------ZAT6  ------------>MYB.PH3(1) ---------->DOF2    <-----------RAV1(2) --------->YAB1 <xxxxxxxx
 
gtgttcaaactaacataaaccgttatcgcctggggaaaacaaaagttttaagaagagaaacaggtggaaaatgtaacaaaaataaaaataggttccaccg  111900
                                             <xxxxxxxxxxxxxxxsmallRNA(le3)
                                            <xxxxxxxxxxxxxxxxsmallRNA(i)
                                           <xxxxxxxxxxxxxxxxxsmallRNA(se3)
                                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                       --------->MYB46(3)
                                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                     --------->MYB52(1)               <------------CBF
                                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------ANAC55(2)
                    <-------TEIL    ------>ZmHOX2a(1)       *TSS     <<<<<<<<<RAP2.2
                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <----------DOF2         --------->ANAC55(2)
           <--------P              <---------MYB59     --------->MYB46(3)         <-------TEIL
         ----------->GT1        --------->ZAT18      <---------ARR14(2)     --------->At5g28300
xxxxxxxxxxxxsmallRNA(i2)        <---------ZAT18      --------->ARR14(2)    ----------->GT1
xxxxxxxxxxxxxsmallRNA(s)      <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)      <---------TOE2(3)
xxxxxxxxxxxsmallRNA(fl3)   <---------ZAT14 <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ZAT14     <------
 
agacttgaactcgggttactagattcagagtctagtgtcctaaccgctagaccatggaaccgcttgatgtttagattgcagtaaatacgtttttaatatg  112000
                                         <---------GLK1(1)
                                         --------->GLK1(1)
                                        <---------GLK1(2)
                                        <---------ARR11(3)
                                     <---------HSFB2a(2)
             ---------->DOF2         --------->HSFB2a(2)      ------>ZmHOX2a(1)
            <---------WRKY38(1)  <----------DOF2 --------->At4g35610         ---------->DOF2
   <------------CBF         <---------HSFC1(2)   <---------At4g35610      --------->AHL20(2)    ----
---AHL20(1) <---------WRKY12--------->HSFC1(2)------>ZmHOX2a(1)    <-----------GT1        ----------
 
tttctctattgtgagtcaaagggtaatgcgatgtttctttctagatttcctaagctaactcagtcctaataaaccgattaaaaagaacatgaacaaagca  112100
                --------->ANAC58
                --------->ANAC58
       ---------->DOF2
   --------->YAB1                                                       <-----------GT1
  <------ZmHOX2a(2)                                                    <---------AHL20(2)
 <---------ARR11(3)                                                    --------->AHL20(2)
 --------->ARR11(3)                                                 <---------ICU4
<---------At4g35610            <-------TEIL                        --------->ICU4
----->AtLEC2<-----------HVH21 --------->CCA1(2)                  --------->YAB1
>DOF2<---------YAB1---------->DOF2                 <-----------GT1 <---------YAB1            <------
 
tgcagatcataaaagtgtcacacaaagagagagatacatgttagattgtttttttttcttctcttaaatgataattaatcgttctaacaaaaacttagct  112200
                                              <---------KAN4(2)
                                           ----------->GT1
                                          --------->ANAC46
                     <------------CBF    --------->SPL7
                   --------->AHL20(1)   --------->MYB52(1)
                   <---------AHL20(1)  <---------SPL7---------->DOF2
                   --------->ARR11(3) --------->AtMYB61                                          <--
         --------->ATHB12       ---------->DOF2    --------->YAB1                       --------->ARR11(3)
---At4g35610 ----------->GT1 ----------->RAV1(1)--------->YAB1*TSS            <---------TOE2(3)  <--
 
actagtcttccatgatttgttatatattgagacaacaaagaccatacggtataatcaaaagacttgttgaatatagaatataagattagatgattttggt  112300
                                                                                                <---
                                                                                          <-------TEIL
                         <---------YAB1                                                  --------->TCP16(2)
                        --------->TOE2(3)                                               <---------ARR14(2)
-------ANAC58           --------->YAB1                                   ---------->DOF2--------->ARR14(2)
-------ANAC58      <---------YAB1                                 ---------->DOF2  ------>ZmHOX2a(1)
 
gctagcctccctcttcgctgttctcattcttaatgttcttctatggagatggctcaaggcttcagcatgtaaagcccaaaggcttcctccaggtccacca  112400
    <---------------AGL15                                                       --------->O2
    ====================================================MADS_MADS               <---------TGA1a
    --------------->AGL15                                                       <---------O2
   <---------------AGL15                                                        --------->TGA1a
   --------------->AGL15                 =================================================MYC_MYB
  <-----------------AGL2                 ---------->CDC5                      <---------ALFIN1
  <-----------------AGL3               --------->TOE2(3)                     <---------ZAT18
  <-----------------AG                ----------------->AG                 --------->PCF2
  ----------------->AGL1              <-----------------AGL1             --------->ANAC58
  <-----------------AGL1              ----------------->AGL1             --------->ANAC58
  ----------------->AGL3          <----------DOF2                   <---------------AtSPL8     <----
  ----------------->AG         ------>NtERF2                        <---------ICU4           ------>NtERF2
  <---------ANAC58         --------->ALFIN1           <---------ANAC58  --------->SPL7   --------->AtMYB61
  <---------ANAC58  ====================================MADS_MADS   <---------------AtSPL3   -------
  ======================================================MADS_MADS  --------->ICU4    --------->ETT(2)
------YAB1          <-----------------AGL3            <---------ANAC58  --------->RAP2.6(3)<--------
 
agattgcctattttgggtaaccttcttcaattggggcctttacctcatcgggacttggcttctctatgtgataagtacggcccacttgtctacctccggc  112500
                                         --------->LBD16
                                --------->ARR14(2)
                           <------ZmHOX2a(2)           <---------RAP2.6(2)                         -
                          <---------ARR14(2)           <---------RAP2.3(2)                        <-
                          --------->ARR14(2)          <---------LBD16                            ---
                        --------->HSFB2a(1)    --------->GLK1(2)                                 <--
                        --------->HSFC1(2)<---------MYB52(1)                                     <--
                        <---------HSFB2a(1) ----------->ARR10                                    ---
                      --------->MYB52(1)<---------ANAC58     <------ZmHOX2a(1)                   ---
                     ------->GAMYB      <---------ANAC58 <------NtERF2                           ---
-----ANAC46         --------->MYB46(3)------>MYB83<----------DOF2                               ----
-->LBD16            <---------MYB52(2)------>MYB46(1)<-----------RAV1(1)                       -----
-LBD16         --------->YAB1 --------->LBD16 <---------GLK1(2)                              -------
 
ttggaaatgtagatgctatcacaacgaacgatcccgataccatccgtgagattcttttgcggcaggacgatgttttttcatcgagacccaaaacactcgc  112600
        ------>MYB83
        ------>MYB46(1)
     --------->ANAC46                                     ---------->DOF2                ------>MYB83
  <---------ZAT18                                 <------NtERF2                        <---------MYB111(1)
-------->DEAR3(1)                                --------->ANAC58                   <---------ALFIN1
-----NtERF2<---------SPL7                        --------->ANAC58            <---------AtLEC2
--->NtERF2<---------ANAC58                      <---------LBD16          --------->GLK1(1)
----NtERF2<---------ANAC46                    --------->PCF5             <---------GLK1(1)
-------At4g35610                              <---------PCF2             --------->CCA1(2)
------>At4g35610                              --------->PCF2            --------->ARR11(3)
------>ZAT14           <---------PCF2         --------->TCP15(1)        --------->ARR14(2)        --
------>LBD16           ----------->TGA1       <---------PCF5            <---------ARR11(3)        --
----->DEAR3(1)      --------->ALFIN1          --------->TCP20           <---------ARR14(2)       ---
---->RAP2.3(1)   ------->TEIL   <----------DOF2<-----------------AGL1  <------ZmHOX2a(1) ------>MYB46(1)
-->ANAC46 <---------ANAC58<---------bZIP60(2) --------->TCP16(1)    <------ZmHOX2a(1)  <---------MYB111(2)
 
cgcagtccacctagcgtatggatgtggggacgttgcattagcgccaatgggcccgcattggaaaagaatgaggaggatatgcatggaacacctacttaca  112700
                                                                                             -------
                                                                                       ----------->GT1
                                      --------->ZAT2                               <---------GLK1(1)
          ------->TEIL  ------>MYB46(1)                                            --------->GLK1(1)
         <---------CCA1(2) ------->GAMYB                                          ---------->DOF2
     <---------ANAC58   --------->MYB52(1)                                      --------->LBD16
     <---------ANAC58   ------>MYB83  <---------ZAT2                          <---------LBD16<------
  --------->DAG2      <---------MYB55(2)                                    <---------ARR14(2)
---------->DOF2       --------->MYB46(3)                                    --------->ARR14(2)
------->AtMYB61       ------->GAMYB<------ZmHOX2a(1)                    ----------------->AGL1     <
----->GAMYB  <----------DOF2  <----------CDC5                           ----------------->AGL2     <
------>MYB46(3) <-----------GT1  <---------TOE2(3)                      <-----------------AGL1 -----
 
accaaaaggcttgaatcttttacaacccaacgggctgaggaagctcggtatctaatacgagatgtcttcaaacggtccgaaaccggaaagccgataaatc  112800
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AGI:  At1g01270.1   
Description:  pre-tRNA. tRNA-Gln (anticodon: CTG)
Range:  from: 111890    to: 111961    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g01280.1   
Description:  CYP703/CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding. similar to TT7 (TRANSPARENT TESTA 7), flavonoid 3'-monooxygenase/ oxygen binding [Arabidopsis thaliana] (TAIR:AT5G07990.1); similar to cytochrome P450 [Petunia x hybrida] (GB:BAA92894.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14388.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79465.1); contains InterPro domain Cytochrome P450, E-class, group I; (InterPro:IP
Range:  from: 112263    to: 113947    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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