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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                            --------->DAG2
                                           ---------->DOF2
                                    ------>ZmHOX2a(1)                                    --------->AHL20(2)
                                <---------ARR14(2)                                       <---------YAB1
                                --------->ARR14(2)                                       <---------AHL20(2)
                             <---------ANAC58                                           --------->AHL20(2)
                             <---------ANAC58  --------->ALFIN1                   <----------DOF2
                     <---------AHL20(2) --------->TOE1(3)                       <---------ZAT18
                    <---------AHL20(2)  --------->TOE2(3)          ----------->RAV1(1)  <---------AHL20(2)
------MYB46(3)      --------->AHL20(2)  <---------MYB59          --------->At4g35610  <---------YAB1
 
cgttgaaataacccaaactaaaattaaatattgagtatcctaacctaaaagtgttgatatatgaagacagcaacaatgctctgtgcattattttaattag  88500
                                                                                          --------->DREB2C(2)
                         <----------DOF2                                              --------->WRKY38(1)
                 --------->AHL20(2)                                          --------->ALFIN1   ----
                 <---------YAB1                                             <----------DOF2     ----
                --------->AHL20(2)                                         <---------ANAC46    <----
                <---------AHL20(2)                                         <---------ANAC58---------
               --------->YAB1                                              <---------ANAC58<--------
           --------->AHL20(2)                                       <---------At4g35610 ------->TEIL
           <---------AHL20(2)--------->AHL20(2)             <---------AHL20(2)     <---------AtLEC2
     --------->AHL20(2)  <---------DAG2         ------->TEIL--------->AHL20(2) <---------ANAC46-----
  <----------DOF2<---------AHL20(2)<---------YAB1       --------->ICU4<-----------RAV1(1)--------->DEAR3(2)
 
ctcttcttttatatataattttaattagctttttatatatgattcaaaatgaatatacaatgtttaaatatagctgtggcttgtgggcatggaccgacat  88600
       --------->TOE2(3)
----->ATHB12
----->ATHB51                                                                    --------->ARR11(3)
-----YAB1    <---------AHL20(2)  <---------ZAT6                                 <---------ARR11(3)
-->RAV1(1) --------->ICU4      ----------->GT1                               --------->DAG2
-DDF1 ----------->GT1   <---------ATHB12         --------->TOE2(2)          ---------->DOF2       <-
---->ICU4  <---------YAB1  <---------YAB1        --------->TOE1(2)     --------->TOE2(3)          <-
 
aattgaaaaacgttattattttgctaaatcaatatagtgatacaacatgaaacccacgatttgtctggagaccacctaaaaaagctcttatgctccatca  88700
      <-------GAMYB
     --------->MYB55(2)
     --------->MYB111(2)
     <---------MYB46(3)
   <-------GAMYB
   <---------ANAC58
   <---------ANAC46                      <---------DAG2                                         ----
   <---------ANAC58                      <----------DOF2                                   <--------
  --------->MYB52(2)                    <---------ANAC58                                  <---------AHL20(2)
  <---------MYB46(3)               --------->ATHB12                                       --------->AHL20(2)
  <------MYB46(1)                 --------->AHL20(2)                             <---------ANAC46
  --------->MYB55(2)              <---------AHL20(1)                            --------->At4g35610
  <------MYB83                    --------->AHL20(1)                            <---------At4g35610
 <---------AtMYB61                <---------AHL20(2)                        <---------REM1(1)  -----
--------MYB46(3)                ------->TEIL                                --------->ALFIN1  ------
----------RAV1(1)   --------->ANAC46    <---------ANAC58    <----------DOF2 <-----------RAV1(1)-----
 
attgttggttgttgtctacttctacctcatgtatgaatttattgctttttttttggtctatttctttagtttttatatggtgttgctgaaaaattaaata  88800
                                                    <---------ANAC46
                                                    <---------ANAC58
        --------->YAB1                              <---------ANAC58
 <------------CBF                           ---------->DOF2
 <---------ANAC46                     ----------------->AGL3     <---------TOE2(3)
----->CCA1(2)               <---------RVE1(1)       ----------->GT1        ------>ZmHOX2a(1)
-AHL20(2)                  <---------ARR11(3)   --------->ALFIN1---------->DOF2
---->ARR11(3)          --------->ANAC55(2) --------->YAB1      --------->YAB1                  <----
--->AHL20(2)           --------->O2   ------------>CBF         --------->AHL20(2) ---------->DOF2*TSS
---->AHL20(1)          <---------ANAC55(2)<---------ATHB12------------>CBF<---------MYB59  <-------TEIL
 
tatggattgtagcataagttgggcctacgtgatattttaggcccaataaaagttggggtgaaacaattaaagtatttcctaactaaaaagagggttcaga  88900
                                                                                                 ---
                                                                                                 ---
                                       --------->ATHB12                                          <--
                               <---------MYB46(3)              <---------AtMYB61                <---
                              <---------ANAC46                 --------->ALFIN1             --------
                           --------->ALFIN1                  --------->ALFIN1              <-------MYC3
           <---------GLK1(2)<---------ANAC46 <---------At4g35610                           ------->MYC3
-----GLK1(2)             <-----------RAV1(1) --------->At4g35610<---------ANAC46      ----------->RAV1(1)
 
atgttgaagaaacagaaacttagggtttatgtggtggatgaatgatttagcagcgaattgaagggtgtggtggaagatggagttttgtccaacatgtggg  89000
                     <------NtERF2
                 <---------bZIP60(2)
                 --------->ZAT2
                 <------MYB46(1)                                --------->REM1(1)
                 <------MYB83                               <------NtERF2
                 <---------ZAT2                         <-----------HVH21
<-----------RAV1(1)--------->ALFIN1                    <---------O2                        ---------
------>ARR14(2) <---------DEAR3(1)                     --------->O2              <----------DOF2   <
------>GLK1(2)  --------->MYB111(2)           <-------MYC3 ------>NtERF2       <-------TEIL---------
-------ARR14(2) <---------AtMYB61             ------->MYC3 <---------ATERF1(1)<---------ARR11(3)  <-
------GLK1(1)   --------->ALFIN1--------->GLK1(2)      --------->ANAC46      <---------GLK1(2) <----
->ALFIN1--------->CCA1(2)      <---------GLK1(2)      --------->SPL7 ---------->DOF2       <--------
 
aatctgttgcgatacgagggaggtggcaattcgagattcttctgttccacatgtccatacgtcgcctacatccaaagacaggttcttttttcaattatat  89100
>YAB1                    --------->AHL20(2)
----------DOF2         <---------MYB52(1)                                           --------->ANAC58
>AHL20(2)            ----------->GT1                                        ---------->DOF2
--------DAG2      --------->MYB52(1)                <----------DOF2  --------->ALFIN1              <
-------GT1     <---------At4g35610           ------>ZmHOX2a(1)   <-----------RAV1(2)--------->ANAC58
-AHL20(2)      --------->At4g35610   ------>ZmHOX2a(1)         >>>>>>>>>WRKY18      --------->ANAC46
 
accttttgaaagtttgtgagcaaaccgttaaaattctctcctctgttcctgagtgctttggaattttgacaggtggagataaagaagaagcaacttctgg  89200
                                              --------->At4g35610
                                              <---------At4g35610
                                           --------->ZAT2
                                           <---------ZAT2
                                           <---------At4g35610
                                       --------->ANAC46
                                       <---------ALFIN1     <---------CCA1(1)                     ==
                                      --------->MYB46(3)    <---------RVE1(1)                     <-
            --------->GLK1(2)    <----------TaMYB80        <---------ARR11(3)            <----------
  --------->GLK1(1)         --------->YAB1 --------->At4g35610  <-----------GT1          -----------
---------TOE2(3)         ---------->DOF2 <---------ALFIN1  --------->ARR11(3)           <-----------
 
ttaagaaatctatagaagctgttgtgactaaagatgatatacccacagctgctgaaactgaaggtattttcagtctcttgtcttctcttcttctaatttt  89300
                                     ---------->DOF2
                                 <---------LBD16
                              <---------O2
                              ==================bZIP_DOF
                              =============================================bZIP_DOF
                              =============================================bZIP_DOF
                              --------->O2
                              --------->TGA1a
                          ------>ZmHOX2a(2)
                         <---------At4g35610                                                      --
=================================HOX2a_HOX2a                                                     ---
-----ZmHOX2a(1)         --------->ARR11(3)                                 <-----------RAV1(1) <----
-----AGL15  <------MYB83<---------ARR11(3)           <----------DOF2<----------DOF2      <------MYB83
---->AGL15  <---------MYB46(3)<---------TGA1a <---------ANAC46  <----------DOF2          <------MYB46(1)
------AGL3  <------MYB46(1)   ==================bZIP_DOF     <-----------GT1         --------->ATHB12
 
aggactgtgatgagttggttcagagttgatctcacttggggaaagagtagagtagacttttgtttcactttctttctcatgttgggattgtttggtttta  89400
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AGI:  At1g01210.1   
Description:  DNA-directed RNA polymerase III family protein. similar to DNA-directed RNA polymerase III family protein [Arabidopsis thaliana] (TAIR:AT4G07950.1); similar to Os02g0672700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047708.1); similar to hypothetical protein OsI_008269 [Oryza sativa (indica cultivar-group)] (GB:EAY87036.1); contains InterPro domain Zinc finger, TFIIS-type; (InterPro:IPR001222); contains InterPro domain DNA-directed RNA polymerase, M/15 kDa subunit; (InterPro:IPR001529)
Range:  from: 88898    to: 89745    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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