Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     --------->ANAC58                                                                   --------->ANAC46                                                                   --------->ANAC58            --------->ICU4                                     --------->YAB1     --------->YAB1             --------->At5g28300          ------->TEIL                      <-----     <---------ICU4---------->ID1                         <---------ANAC55(2)                  ------    <---------ATHB12           ----------->GT1            --------->ANAC55(2)    ---------->DOF2    -  --------->WOX13(1)  <---------YAB1                     <---------TOE2(3)   --------->LBD16   <-----   agaccaattaagacataatttgttctaattacacagtaaaaaatatcaaattgttctctaacgtatcacaagcgacatccgagtaaagactaaaattcga  71900            <---------TOE2(3)            <---------TOE1(3)          ---------->DOF2         --------->AHL20(2)      <---------ANAC58         <---------AHL20(2)      <---------ANAC58     <---------AHL20(1)         --------->At4g35610     <---------AHL20(2)         <---------At4g35610     --------->AHL20(1)         <---------MYB46(3)                                  <------ZmHOX2a(2)     --------->AHL20(2)      <---------ANAC58                                      --------->ARR11(3)    <---------AHL20(2)       <---------ANAC58                                      <---------ARR11(3)    --------->AHL20(2)   --------->DAG2                                           <---------At4g35610 ----HSFC1(1)           ---------->DOF2                                           <---------GLK1(1) --->HSFB2a(2)        <---------------AGL15                                       --------->GLK1(1) -------->AHL20(2)    --------->HSFB2a(2)            <------ZmHOX2a(1)   ---------->DOF2        <---- ----HSFB2a(2)        <---------HSFB2a(2)  <------ZmHOX2a(1)  <---------ARR11(3)  --------->At4g35610   gaaaaaataaattaaaggtttcttctaaaaggggtgcttacataaggactcttgaggagagcgatatcatcttcatcaagcgggagatcactcaccattt  72000                   --------->CCA1(2)                  <---------ARR11(3)                  --------->ARR14(2)                  --------->ARR11(3)                  <---------ARR14(2)                  --------->MYB52(1)          --------->LBD16                          --------->TOE2(3)                        <------MYB46(1)         <---------ANAC58                       <---------GLK1(1)                          <---------AtMYB61         <---------ANAC58                       --------->GLK1(1)                        <---------MYB52(1)      --------->GLK1(2)                  <---------ANAC55(1)                         <---------At5g28300     <---------GLK1(2)                   <---------ANAC58                            <---------DOF5.7(2)     --------->ARR14(2)                  --------->ANAC55(2)            --------->HSFC1(2) --------->MYB59     <---------ARR14(2)                  <---------ANAC58               <---------HSFC1(2)<---------MYB55(1)    <---------At4g35610                  <---------ANAC55(2)      ---------->DOF2   <-----------GT1 -----AHL20(2)  ----------->ARR10        <---------ANAC46    --------->YAB1     ------->TEIL<------MYB83   tttttcagattccgagtgaagatttgagaaattcgaagggtttacgtgagatttcttaacgaataagaaaaagaagctactgtatgttaccgtttggtct  72100                        --------->HSFB2a(1)                                        <----------DOF2                        <---------HSFB2a(1)                              ------------>CBF                        --------->HSFC1(2)                            <----------DOF2  --------->HSFB2a(2)                        <---------HSFC1(2)                      <---------------AtSPL8 <---------HSFB2a(2)                 <---------ARR14(2)                       ------------>CBF   ----------->GT1              <---------TOE2(3)                           <---------------AGL15 ------->TEIL              <---------TOE1(3)       *TSS                --------------->AGL15 <-----------GT1   ctctgtaagtgtgtctgaggtttcgaaatttcgaatttaggcgaagaaggaagaaactgactcaatgtagtactttgcaatgtaactttctcgatggtcc  72200                                          <------------CBF                                      <-----------GT1                                  <---------ANAC58                                      ---------->ID1                                <--------P      -                                     <-----------GT1               <-----------------AG<---------ANAC58                                 <----------DOF2      --------->ARR11(3)         <---------TOE2(3)  -                         --------->ARR14(2)           <---------ARR11(3)   <------MYB46(1)          <          <---------HSFC1(2)     ------>ZmHOX2a(1)    --------->AHL20(1)   <------MYB83<---------ANAC46          --------->HSFC1(2)  ---------->ID1         --------->AHL20(2)   --------->MYB59 <-------GAMYB   atgggccttagaaccgtcttaggcccaaatatgtccttttttcccattggcccaaatatatccaaaactttctaatttggttagaggttgctcgttgctg  72300      <---------TOE2(3)    --------->AHL20(2)                                                                              -    <---------AHL20(2)                                                                              < -------->AHL20(2)                     *TSS                                                 <-------- -------->ICU4                     ---------->DOF2                                          --------- ---------AHL20(2)  <---------ANAC46 <----------ID1                                 --------->AHL20(2)   tattaattaatgttttatgttttcgtttagagttttgtaaagacaaattagagagagagagagagagacagaggcatttttggtcataaaatccacacag  72400                                                                                       <---------ANAC58                                                                                     ================                                                                                     ------>ZmHOX2a(1)                                                                                    --------->TOE2(2)                                                                              <---------ICU4                                                                              --------->ATHB12                                                                              --------->YAB1                              --------->AHL20(1)                      <---------ANAC58 <---------ANAC46                              --------->AHL20(2)                      <---------ANAC46 <---------ANAC58                              <---------AHL20(2)        --------->AHL20(1)    <--------HAHB4 --------->MYB55(2)           <---------AHL20(1)     --------->YAB1   <---------ANAC58<---------TOE1(2) <---------MYB46(3)     --------->ANAC46             --------->AHL20(2)      --------->ICU4     ----- -------->ALFIN1        --------->ANAC58<---------GLK1(2)--------->AHL20(2)  <---------ATHB12 ------- ---------AtMYB61       --------->ANAC58<---------ARR14(2)       --------->CCA1(2) <---------ANAC58 -ALFIN1           <---------ARR14(2)   --------->ARR14(2)      --------->ARR11(3) <---------ANAC58 >ANAC46    <-----------RAV1(2)        <------ZmHOX2a(1)<---------AHL20(1) --------->WOX13(1) <------   aggtggttcgacatccaggtgaatccaagtaataaattgcaggattctctctctataatatatatagatatagcttgcaatcatttcctgcgtttggatc  72500                                                                                                 <---                                                                                          --------->ZAT2                                                                                          <---------At4g35610                                                                                          --------->At4g35610                                                                                         ----------->RAV1(1)                                                                                       --------->ZAT2                                                                                       --------->At4g35610                                                                                       <---------At4g35610                                                                                    --------->At4g35610                                                                                    <---------At4g35610           --------->ETT(2)                  --------->MYB52(2)                     <---------ZAT2 -- ==HOX2a_HOX2a                 --------->ANAC58       ---------->DOF2               --------->ZAT2--- ->ZmHOX2a(2)          <---------LBD16 <---------TOE2(3)                 >>>>>>>>>TBF1----------->RAV1(1) -->ARR14(2)      <----------DOF2      <---------TOE1(3)       ----------->GT1     ----------->RAV1(1) ---ARR14(2)  <---------TOE1(2)--------->ANAC58 --------->ALFIN1  ---------->DOF2<-------TEIL  ------   ggtctgggttttgtcgagggttttttggggaagacgaaattagggtttagttggggcaaagtaagtagtaaagaagaagaagatgcagcagcagcagtct  72600                       <---------DEAR3(2)                     <---------MYB52(1)                    --------->LBD16                              --------->HSFB2a(1)                   <---------ANAC46                           ---------->DOF2                   <---------ANAC58                       <------ZmHOX2a(2)                   <---------ANAC58                      <---------ARR14(2)                --------->ARR14(2)                       --------->AGP1                <---------ARR14(2)                       --------->ARR14(2)              --------->HSFC1(2)                    ------>MYB46(1)                    --------->ARR11(3)              --------->HSFB2a(1)                   --------->MYB52(1)                 <---------ARR11(3) ------LBD16<---------MYB52(1)----------->RAV1(2) <---------MYB46(2)             --------->ANAC58 ------->LBD16<---------MYB46(3)                  <---------MYB59<---------HSFB2a(1)  <---------CCA1(2) ------>ANAC46<---------HSFC1(2) --------->ZAT2 --------->MYB52(1)        <----------DOF2 --->ARR14(2) <---------HSFB2a(1)--------->At4g35610------>MYB83--------->DAG2   --------->ANAC58   ccgcaaatgtttccgatggttccgtcgattccccctgctaacaacatcactaccgaacagatccaaaaggttccttctttctcaccctatatctctccct  72700                                                                    <---------YAB1                                                                  <---------At4g35610                                                                <---------ANAC58                                                                <---------ANAC58                                                          -------->ATHB1                                                          <---------ICU4                                                          --------->ATHB12  --------->ANAC58                                       <----------DOF2   <---------YAB1     --------->ANAC58      <--                         <------ZmHOX2a(1) <---------------AtSPL8 --------->At4g35610          <-----               --------->ZAT6          <---------DAG2   <---------ARR11(3)  --------->ANAC46  -------   ctctcttaatttgttcaacactacttaggaggctcttagagcttttttgtactgacaaaatcattggcttctgagtgcaagtaatactcttttgactgta  72800  Previous    Next  AGI:  At1g01150.1    Description:  DNA binding / zinc ion binding. similar to TRFL10 (TRF-LIKE 10), DNA binding [Arabidopsis thaliana] (TAIR:AT5G03780.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80644.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23553.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) Range:  from: 70115    to: 72138    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g01160.1    Description:  GIF2 (GRF1-INTERACTING FACTOR 2). similar to GIF3 (GRF1-INTERACTING FACTOR 3) [Arabidopsis thaliana] (TAIR:AT4G00850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24305.1); contains InterPro domain SSXT (InterPro:IPR007726) Range:  from: 72339    to: 74096    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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