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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                             <---------ZAT6
                                                            <---------YAB1                      <---
         --------->CCA1(2)                               <---------AHL20(2)                     ====
        <---------ARR11(3)                               <---------YAB1                      <------
    --------->REM1(2)                                 --------->AHL20(1)                     -------
 <---------ANAC46                                     <---------AHL20(1)                  --------->YAB1
------>At4g35610                                      --------->AHL20(2)               --------->TOE2(3)
-ZmHOX2a(2)                                           <---------AHL20(2)         --------->TOE2(3)--
---ARR11(3)                      --------->AtLEC2  --------->AHL20(2)          <---------ATHB12 ----
-->ARR11(3)                    --------->YAB1    <---------AHL20(2)   <----------DOF2  --------->TOE1(3)
-->ARR10--------->ARR11(3)    <-------TEIL   <---------RVE1(1)     --------->ZAT6--------->TOE1(3)--
 
agcatcgtgtagatatatacagaaacaaaaacattcatacaaaattcgatattttaaaatattattgttaacactttaatcaaacattaaccttaataac  67200
                   <-------MYC3
       --------->TOE2(2)
       --------->TOE1(2)
     =======================MYC_MYB
     ------>MYB83  ------->MYC3
     -------->P   ===========================================bZIP_DOF
     ------>MYB46(1)                                                                      <---------ANAC55(1)
    --------->MYB55(1)            <---------ANAC55(2)                                     <---------ANAC58
   <---------MYB46(2)  --------->TCP15(1)                                                 <---------ANAC58
   --------->AtMYB61--------->ALFIN1                                                      --------->ANAC55(2)
   --------->DEAR3(1)  --------->TCP20                                                    <---------ANAC55(2)
   <---------MYB111(1) <---------PCF2                                                     <---------ANAC46
   --------->MYB46(3) <---------TCP23     <-----------GT1                               <-----------GT1
   <---------MYB111(2)<---------TCP15(2)<---------AHL20(2)                         --------->YAB1
------MYB59       --------->O2    --------->ANAC46                                 <---------ICU4
============================MYC_MYB     --------->AHL20(2)                         <--------HAHB4
-----GT1          <---------TGA1a --------->ANAC58                                <---------YAB1
-->MYB52(1)       --------->TGA1a --------->ANAC55(2)                             --------->ICU4
---->MYB83        <---------O2    --------->ANAC58    --------------->AtSPL8    --------->YAB1
--->GAMYB  <------ZmHOX2a(1)    --------->YAB1        <---------------AtSPL8    <---------ICU4
---->MYB46(1) <------ZmHOX2a(1)<---------ATHB12   <----------DOF2            --------->TOE2(3)     >
 
cgaacaccaacctaggaggacatgtgggtccctaatcacgaaattaaactgttctttatagtacttaaaaacaaacaaatccataatcattttacgtgat  67300
                                                                                       ----------->HVH21
                                                                                       ----------->TGA1
                                                                                      <-----------HVH21
                                                                                     --------->At4g35610
                                                                                     <---------At4g35610
                                                                            <----------DOF2
                 --------->GLK1(2)             <----------DOF2             <---------ANAC58
                 ------->TEIL                 <---------DAG2               <---------ANAC58
              <---------MYB52(2)            --------->ARR11(3)         <---------At4g35610<---------DEAR3(1)
             <---------TOE2(3)              <---------ARR11(3)    <---------YAB1     --------->LBD16
            --------->MYB52(1)        <---------ANAC55(2)     <---------ARR14(2)   <---------LBD16
            <-----------GT1           <---------ANAC46        --------->ARR11(3) ------>ZmHOX2a(2)
          <---------MYB52(2)          --------->ANAC58        --------->ARR14(2)<---------GLK1(1)
     --------->YAB1                   --------->ANAC58       ===========================HOX2a_HOX2a
   ------>MYB46(1)                   <---------LBD16         <------ZmHOX2a(1) <---------ARR11(3)
   ------>MYB83------->GAMYB       ----------->HVH21    --------->WRKY18(1)<---------ANAC46
>>>>>>>>>MYB80--------->MYB46(3)   ----------->TGA1    <-----------HVH21<---------RAP2.6(2)
 
caaaccaaacacaattaacgaacctgttcgaccattttgtgacggaagaccttttctcggtcgaggattttgatagcggcttgatctccggtgacggtgt  67400
                                                                                      <------NtERF2
                                                                                     ------>NtERF2
                                                                                    --------->DEAR3(1)
                                                                                   <------NtERF2
                                                                                   --------->ATERF1(1)
                                                                                  ------>NtERF2
                                                                                  <---------ATERF1(1)
                                                                                 --------->DEAR3(1)
                                                                                 <---------DEAR3(1)
                                                                                 <---------O2
                                                                                 --------->O2
                                                                                --------->RAP2.3(1)
                                                                                --------->ATERF1(1)
                                                                                <------NtERF2
                                                                               --------->LBD16
                                                                               <---------ATERF1(1)
                     <---------HSFC1(2)                                        ------>NtERF2
                     <---------HSFB2a(1)                                       <---------RAP2.3(1)
                     --------->ZAT2                                           <---------ATERF1(2)
                     --------->At4g35610                                      --------->ATERF1(2)
            --------->TOE2(3)                                                 <---------DEAR3(1)
            --------->TOE1(3)                                                 --------->DEAR3(1)
            <---------DAG2                                                   <---------LBD16
         <-----------GT1                          <---------ANAC55(2)        --------->ATERF1(1)
     <-----------ARR10           --------->LBD16  ----------->GT1           <---------ATERF1(1)
  <---------ANAC46   <---------At4g35610          --------->ANAC55(2)      --------->ANAC46     <---
  <---------ANAC58   --------->HSFB2a(1)  ---------->ID1               ------>ZmHOX2a(1)        ----
  <---------ANAC58   --------->HSFC1(2) <---------ANAC58          <---------ANAC58<---------RAP2.3(1)
 ---------->ID1     <-----------ARR10   <---------ANAC58          <---------ANAC58<-----------HVH21
 
tcttggcgtatttcaccttagcgaagcttccttctccgagagttcgtcccatctcgtaattccctactcgcgtcctactcgccggcgtcgccttccttct  67500
                                                         --------->WOX13(1)
                                                      --------->GLK1(2)
                                                      ------->TEIL
                                                      --------->ARR14(2)
                                                      <---------ARR14(2)
                                                      <---------ARR11(1)
                                                  <---------------------WRI1
                                                  --------->ATERF1(1)
                                                  <------NtERF2
                                                 <---------RAP2.3(1)
                                                 <---------ORA47(2)
                                                 ------>NtERF2
                                                 <---------ATERF1(1)
                                                 <---------DEAR4(2)
                                                 <---------ERF1
                                                --------->ATERF1(2)
                                                <---------RAP2.3(3)
                                                --------->DEAR3(1)
                                                <---------RAP2.3(2)
                                                <---------ATERF1(2)
                                                <---------DEAR3(1)
                                               --------->ATERF1(1)
                                               <---------LBD16
                                               <---------ABI4(1)
                                             <---------DEAR3(1)
            <----------DOF2                  ------>ZmHOX2a(2)
     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ARR14(2)                              ------>ZmHOX2a(1)
    <---------ATHB12              --------->MYB46(3) <---------ARR14(1)            <-----------ARR10
------At4g35610                 --------->MYB52(1)--------->RAP2.3(1)              <---------ARR11(3)
----->At4g35610         <---------TOE2(3)  --------->ARR14(2)    <---------YAB1    --------->ARR11(3)
 
gcttccactcattttctttttccgattaagaaaatcaacggctctagatcggcggcgaatctatcaatgtgattcttctccctcaatatctctccttctt  67600
                                                                                                   -
                                                                                                   -
                                                                                                   -
                                                                                                   -
                                                                                                   -
                                                                                                   -
                                                                                              ------
                                                                                              ------
                                                                                             -------
                                                                                      <---------PCF2
                                                                                      --------->TCP15(1)
                        *TSS  --------->DAG2                                         <---------TCP15(2)
                       <---------O2                                                 <---------MYB46(3)
                       <---------TGA1a                                           <-----------RAV1(1)
                       =================bZIP_DOF                               <---------ARR14(2)  -
                <---------TOE1(3) --------->ZAT18                       <---------TGA1a    ---------
                <---------TOE2(3)--------->ALFIN1                       --------->ANAC58  <---------ANAC46
            <----------DOF2  ---------->DOF2               ----------->HVH21   <------------CBF    <
            =====================bZIP_DOF                  <------NtERF2--------->TGA1a--------->PCF2
      <---------ANAC46 --------->TGA1a                    ------>NtERF2 --------->ANAC58  <---------ANAC55(2)
     ------>NtERF2  ----------->TGA1              <---------AHL20(2) ----------->HVH21--------->TCP20
  --------->At4g35610 <-----------------------TaNAC69(2) --------->ANAC46  --------->LBD16--------->ANAC55(2)
 <---------MYB46(3) ----------->HVH21            --------->AHL20(2) <-----------HVH21<---------TCP23
 
ctagtggctgcctggttttaaggctgacgagagaaagtggacgagcgagagatttaataggcgcgactgggagtcacgcgcgtattgtgggtcccgtatg  67700
                                            --------->LBD16
                                           <---------ANAC55(2)
    ----------->GT1                        <---------ANAC58
-------->ANAC55(1)                         <---------ANAC58
-------->ANAC58  <---------ICU4            --------->ANAC55(2)
-------->ANAC58 <---------YAB1             <---------ANAC46
-------->ANAC55(2)                 <-----------HVH21
-------->O2   --------->YAB1       <-----------TGA1
-------->ANAC46 --------->ICU4    --------->ANAC46
--->ANAC58    <---------ICU4      --------->bZIP60(2)
--->ANAC58   <---------ATHB12    --------->LBD16                          --------->TOE2(3)
-->SPL7      --------->ICU4     <---------ANAC58                   <-------TEIL
-------->bZIP60(2)              <---------ANAC58               ------->TEIL                     ----
>LBD16     --------->YAB1       <---------ANAC46            <---------ANAC58                    <---
---------ANAC55(2)             <---------LBD16              <---------ANAC58<-------TEIL--------->YAB1
 
ccacgtaatgtcaaaaatcattattttgctctgttccgcgtcagtcccgtgttatttgtacttgtgtacgttcgtaacgttcattcttcattcatataaa  67800
                            <---------------AGL15
                            --------------->AGL15
                           ----------------->AGL3                                                  -
                   <---------ANAC58                                                             ----
      <---------ICU4       ----------------->AGL2                 --------->YAB1               <----
      --------->ATHB51     <-----------------AGL3    <---------ARR14(2)                        -----
   --------->TOE2(3)  ----------->GT1                --------->ARR14(2)                   <---------ANAC46
----->AHL20(2)     <---------ANAC58         ------>ZmHOX2a(1)    <---------YAB1        <---------AHL20(2)
------AHL20(2)     <---------ANAC46  <---------GLK1(2)        <---------AHL20(2)   <---------AHL20(2)
 
aaaattccataattttgttcttgtgtggtaactatatacagaaactcctgtttaagtatatggattttatgaaaattttggggttttaaatttatgtgga  67900
                                               <---------ARR14(2)
                                          <---------ANAC46            <-------TEIL
---------->GT1                        <----------DOF2       <----------DOF2
----->CCA1(2)                        <---------ICU4      <---------ARR11(3)
-----ARR14(2)                  --------->TOE2(3)         --------->ARR11(3)                      ---
---->ARR14(2)    ----------->GT1------>ZmHOX2a(1)       <---------CCA1(2)                        ---
 
tatggttttatttgtaagggatgtgatttgatgtccttaatctttatgtgtatatgagtatatctttcagtgattcattccattctactgatgttcaaag  68000
                                                                                                   -
           <---------AHL20(2)                                                                      -
       --------->YAB1                                          <----------DOF2                     -
      <---------YAB1                                           <---------DAG2                      <
  <-------GAMYB                                             <-----------GT1                   <-----
------>WRKY12                                            --------->YAB1                  <----------
------>WRKY38(1)                <----------DOF2<---------GLK1(2)            <----------DOF2   ------
 
ttgactgttatcatattatttgatatagttgtattcttttcatgtagaaatattctctaaatataacttttttttttgtctttagttagaagttggaaac  68100
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AGI:  At1g01140.1   
Description:  CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); kinase. similar to CIPK23 (CBL-INTERACTING PROTEIN KINASE 23), kinase [Arabidopsis thaliana] (TAIR:AT1G30270.2); similar to CIPK23 (CBL-INTERACTING PROTEIN KINASE 23), kinase [Arabidopsis thaliana] (TAIR:AT1G30270.1); similar to CBL-interacting protein kinase 12 [Populus trichocarpa] (GB:ABJ91219.1); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threon
Range:  from: 64166    to: 67625    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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