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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ZAT6
<---------
YAB1
<---
--------->
CCA1(2)
<---------
AHL20(2)
====
<---------
ARR11(3)
<---------
YAB1
<------
--------->
REM1(2)
--------->
AHL20(1)
-------
<---------
ANAC46
<---------
AHL20(1)
--------->
YAB1
------>
At4g35610
--------->
AHL20(2)
--------->
TOE2(3)
-
ZmHOX2a(2)
<---------
AHL20(2)
--------->
TOE2(3)
--
---
ARR11(3)
--------->
AtLEC2
--------->
AHL20(2)
<---------
ATHB12
----
-->
ARR11(3)
--------->
YAB1
<---------
AHL20(2)
<----------
DOF2
--------->
TOE1(3)
-->
ARR10
--------->
ARR11(3)
<-------
TEIL
<---------
RVE1(1)
--------->
ZAT6
--------->
TOE1(3)
--
agcatcgtgtagatatatacagaaacaaaaacattcatacaaaattcgatattttaaaatattattgttaacactttaatcaaacattaaccttaataac
67200
<-------
MYC3
--------->
TOE2(2)
--------->
TOE1(2)
=======================
MYC_MYB
------>
MYB83
------->
MYC3
-------->
P
===========================================
bZIP_DOF
------>
MYB46(1)
<---------
ANAC55(1)
--------->
MYB55(1)
<---------
ANAC55(2)
<---------
ANAC58
<---------
MYB46(2)
--------->
TCP15(1)
<---------
ANAC58
--------->
AtMYB61
--------->
ALFIN1
--------->
ANAC55(2)
--------->
DEAR3(1)
--------->
TCP20
<---------
ANAC55(2)
<---------
MYB111(1)
<---------
PCF2
<---------
ANAC46
--------->
MYB46(3)
<---------
TCP23
<-----------
GT1
<-----------
GT1
<---------
MYB111(2)
<---------
TCP15(2)
<---------
AHL20(2)
--------->
YAB1
------
MYB59
--------->
O2
--------->
ANAC46
<---------
ICU4
============================
MYC_MYB
--------->
AHL20(2)
<--------
HAHB4
-----
GT1
<---------
TGA1a
--------->
ANAC58
<---------
YAB1
-->
MYB52(1)
--------->
TGA1a
--------->
ANAC55(2)
--------->
ICU4
---->
MYB83
<---------
O2
--------->
ANAC58
--------------->
AtSPL8
--------->
YAB1
--->
GAMYB
<------
ZmHOX2a(1)
--------->
YAB1
<---------------
AtSPL8
<---------
ICU4
---->
MYB46(1)
<------
ZmHOX2a(1)
<---------
ATHB12
<----------
DOF2
--------->
TOE2(3)
>
cgaacaccaacctaggaggacatgtgggtccctaatcacgaaattaaactgttctttatagtacttaaaaacaaacaaatccataatcattttacgtgat
67300
----------->
HVH21
----------->
TGA1
<-----------
HVH21
--------->
At4g35610
<---------
At4g35610
<----------
DOF2
--------->
GLK1(2)
<----------
DOF2
<---------
ANAC58
------->
TEIL
<---------
DAG2
<---------
ANAC58
<---------
MYB52(2)
--------->
ARR11(3)
<---------
At4g35610
<---------
DEAR3(1)
<---------
TOE2(3)
<---------
ARR11(3)
<---------
YAB1
--------->
LBD16
--------->
MYB52(1)
<---------
ANAC55(2)
<---------
ARR14(2)
<---------
LBD16
<-----------
GT1
<---------
ANAC46
--------->
ARR11(3)
------>
ZmHOX2a(2)
<---------
MYB52(2)
--------->
ANAC58
--------->
ARR14(2)
<---------
GLK1(1)
--------->
YAB1
--------->
ANAC58
===========================
HOX2a_HOX2a
------>
MYB46(1)
<---------
LBD16
<------
ZmHOX2a(1)
<---------
ARR11(3)
------>
MYB83
------->
GAMYB
----------->
HVH21
--------->
WRKY18(1)
<---------
ANAC46
>>>>>>>>>
MYB80
--------->
MYB46(3)
----------->
TGA1
<-----------
HVH21
<---------
RAP2.6(2)
caaaccaaacacaattaacgaac
ctgttcgaccattttgtgacggaagaccttttctcggtcgaggattttgatagcggcttgatctccggtgacggtgt
67400
<------
NtERF2
------>
NtERF2
--------->
DEAR3(1)
<------
NtERF2
--------->
ATERF1(1)
------>
NtERF2
<---------
ATERF1(1)
--------->
DEAR3(1)
<---------
DEAR3(1)
<---------
O2
--------->
O2
--------->
RAP2.3(1)
--------->
ATERF1(1)
<------
NtERF2
--------->
LBD16
<---------
ATERF1(1)
<---------
HSFC1(2)
------>
NtERF2
<---------
HSFB2a(1)
<---------
RAP2.3(1)
--------->
ZAT2
<---------
ATERF1(2)
--------->
At4g35610
--------->
ATERF1(2)
--------->
TOE2(3)
<---------
DEAR3(1)
--------->
TOE1(3)
--------->
DEAR3(1)
<---------
DAG2
<---------
LBD16
<-----------
GT1
<---------
ANAC55(2)
--------->
ATERF1(1)
<-----------
ARR10
--------->
LBD16
----------->
GT1
<---------
ATERF1(1)
<---------
ANAC46
<---------
At4g35610
--------->
ANAC55(2)
--------->
ANAC46
<---
<---------
ANAC58
--------->
HSFB2a(1)
---------->
ID1
------>
ZmHOX2a(1)
----
<---------
ANAC58
--------->
HSFC1(2)
<---------
ANAC58
<---------
ANAC58
<---------
RAP2.3(1)
---------->
ID1
<-----------
ARR10
<---------
ANAC58
<---------
ANAC58
<-----------
HVH21
tcttggcgtatttcaccttagcgaagcttccttctccgagagttcgtcccatctcgtaattccctactcgcgtcctactcgccggcgtcgccttccttct
67500
--------->
WOX13(1)
--------->
GLK1(2)
------->
TEIL
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR11(1)
<---------------------
WRI1
--------->
ATERF1(1)
<------
NtERF2
<---------
RAP2.3(1)
<---------
ORA47(2)
------>
NtERF2
<---------
ATERF1(1)
<---------
DEAR4(2)
<---------
ERF1
--------->
ATERF1(2)
<---------
RAP2.3(3)
--------->
DEAR3(1)
<---------
RAP2.3(2)
<---------
ATERF1(2)
<---------
DEAR3(1)
--------->
ATERF1(1)
<---------
LBD16
<---------
ABI4(1)
<---------
DEAR3(1)
<----------
DOF2
------>
ZmHOX2a(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
ARR14(2)
------>
ZmHOX2a(1)
<---------
ATHB12
--------->
MYB46(3)
<---------
ARR14(1)
<-----------
ARR10
------
At4g35610
--------->
MYB52(1)
--------->
RAP2.3(1)
<---------
ARR11(3)
----->
At4g35610
<---------
TOE2(3)
--------->
ARR14(2)
<---------
YAB1
--------->
ARR11(3)
gcttccactcat
tttctttttccgattaagaaaatcaacggctctagatcggcggcgaatctatcaatgtgattcttctccctcaatatctctccttctt
67600
-
-
-
-
-
-
------
------
-------
<---------
PCF2
--------->
TCP15(1)
*
TSS
--------->
DAG2
<---------
TCP15(2)
<---------
O2
<---------
MYB46(3)
<---------
TGA1a
<-----------
RAV1(1)
=================
bZIP_DOF
<---------
ARR14(2)
-
<---------
TOE1(3)
--------->
ZAT18
<---------
TGA1a
---------
<---------
TOE2(3)
--------->
ALFIN1
--------->
ANAC58
<---------
ANAC46
<----------
DOF2
---------->
DOF2
----------->
HVH21
<------------
CBF
<
=====================
bZIP_DOF
<------
NtERF2
--------->
TGA1a
--------->
PCF2
<---------
ANAC46
--------->
TGA1a
------>
NtERF2
--------->
ANAC58
<---------
ANAC55(2)
------>
NtERF2
----------->
TGA1
<---------
AHL20(2)
----------->
HVH21
--------->
TCP20
--------->
At4g35610
<-----------------------
TaNAC69(2)
--------->
ANAC46
--------->
LBD16
--------->
ANAC55(2)
<---------
MYB46(3)
----------->
HVH21
--------->
AHL20(2)
<-----------
HVH21
<---------
TCP23
ctagtggctgcctggttttaaggct
gacgagagaaagtggacgagcgagagatttaataggcgcgactgggagtcacgcgcgtattgtgggtcccgtatg
67700
--------->
LBD16
<---------
ANAC55(2)
----------->
GT1
<---------
ANAC58
-------->
ANAC55(1)
<---------
ANAC58
-------->
ANAC58
<---------
ICU4
--------->
ANAC55(2)
-------->
ANAC58
<---------
YAB1
<---------
ANAC46
-------->
ANAC55(2)
<-----------
HVH21
-------->
O2
--------->
YAB1
<-----------
TGA1
-------->
ANAC46
--------->
ICU4
--------->
ANAC46
--->
ANAC58
<---------
ICU4
--------->
bZIP60(2)
--->
ANAC58
<---------
ATHB12
--------->
LBD16
--------->
TOE2(3)
-->
SPL7
--------->
ICU4
<---------
ANAC58
<-------
TEIL
-------->
bZIP60(2)
<---------
ANAC58
------->
TEIL
----
>
LBD16
--------->
YAB1
<---------
ANAC46
<---------
ANAC58
<---
---------
ANAC55(2)
<---------
LBD16
<---------
ANAC58
<-------
TEIL
--------->
YAB1
ccacgtaatgtcaaaaatcattattttgctctgttccgcgtcagtcccgtgttatttgtacttgtgtacgttcgtaacgttcattcttcattcatataaa
67800
<---------------
AGL15
--------------->
AGL15
----------------->
AGL3
-
<---------
ANAC58
----
<---------
ICU4
----------------->
AGL2
--------->
YAB1
<----
--------->
ATHB51
<-----------------
AGL3
<---------
ARR14(2)
-----
--------->
TOE2(3)
----------->
GT1
--------->
ARR14(2)
<---------
ANAC46
----->
AHL20(2)
<---------
ANAC58
------>
ZmHOX2a(1)
<---------
YAB1
<---------
AHL20(2)
------
AHL20(2)
<---------
ANAC46
<---------
GLK1(2)
<---------
AHL20(2)
<---------
AHL20(2)
aaaattccataattttgttcttgtgtggtaactatatacagaaactcctgtttaagtatatggattttatgaaaattttggggttttaaatttatgtgga
67900
<---------
ARR14(2)
<---------
ANAC46
<-------
TEIL
---------->
GT1
<----------
DOF2
<----------
DOF2
----->
CCA1(2)
<---------
ICU4
<---------
ARR11(3)
-----
ARR14(2)
--------->
TOE2(3)
--------->
ARR11(3)
---
---->
ARR14(2)
----------->
GT1
------>
ZmHOX2a(1)
<---------
CCA1(2)
---
tatggttttatttgtaagggatgtgatttgatgtccttaatctttatgtgtatatgagtatatctttcagtgattcattccattctactgatgttcaaag
68000
-
<---------
AHL20(2)
-
--------->
YAB1
<----------
DOF2
-
<---------
YAB1
<---------
DAG2
<
<-------
GAMYB
<-----------
GT1
<-----
------>
WRKY12
--------->
YAB1
<----------
------>
WRKY38(1)
<----------
DOF2
<---------
GLK1(2)
<----------
DOF2
------
ttgactgttatcatattatttgatatagttgtattcttttcatgtagaaatattctctaaatataacttttttttttgtctttagttagaagttggaaac
68100
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AGI:
At1g01140.1
Description:
CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); kinase. similar to CIPK23 (CBL-INTERACTING PROTEIN KINASE 23), kinase [Arabidopsis thaliana] (TAIR:AT1G30270.2); similar to CIPK23 (CBL-INTERACTING PROTEIN KINASE 23), kinase [Arabidopsis thaliana] (TAIR:AT1G30270.1); similar to CBL-interacting protein kinase 12 [Populus trichocarpa] (GB:ABJ91219.1); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threon
Range:
from: 64166
to: 67625
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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