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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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               ----------->RAV1(1)
            ----------->RAV1(1)             --------->ANAC58
         --------->HSFB2a(2)                --------->ANAC58
     <---------DAG2                       ---------->DOF2                     ---------->DOF2
     <----------DOF2------------------------>ANAC81---------->DOF2     <------ZmHOX2a(1)
--------ZAT18 --------->REM1(1)        --------->ANAC58              <---------TOE1(3)           <--
------->ZAT18 --------->MYB46(3)       --------->ANAC58              <---------TOE2(3)  --------->ATHB12
 
gtctactactttctgcaacaacaaaacaaaaaaactaaaaccaagaaaagccccaaaagattaccacaaattaaggaaacttaaagcccattgatttcaa  63400
                                                                                   --------------->AGL15
                                                                                   <---------------AGL15
                                                                                   <----------DOF2
                                                                                  <-----------------AGL3
                                                                                  <-----------------AGL2
                                                                             --------->AHL20(2)
                                                                             --------->ATHB51
                                                        <---------HSFB2a(1)  <---------ICU4
                                                        --------->HSFB2a(1)  <---------AHL20(2)
                     <---------WOX13(1)                 <---------HSFC1(2)   -------->ATHB1
            ----------->HVH21                        --------->LBD16 --------->At4g35610
        --------->ZAT14                            <---------------------WRI1<--------HAHB4    -----
        <---------ZAT14<-----------GT1    ------->TEIL  --------->HSFC1(2)  <---------ATHB51  ------
        <---------GLK1(1)     ---------->ID1       <---------LBD16  --------->ARR11(3)        <-----
        --------->GLK1(1) --------->TOE2(3)    <-----------HVH21    <---------ARR11(3) ---------->DOF2
     ------->GAMYB<---------YAB1  <---------ANAC58 --------->At4g35610      <---------ATHB12 <------
-------ARR11(3) <----------DOF2   <---------ANAC58 <---------At4g35610      --------->ICU4----------
 
catctcaacagagctctgactttgattaaccttgttgtcttgttgaaccttgtcaccggagtttccaaggagagcttcaattatttctttaaaaggaata  63500
                                                                                                  <-
                                                                                                  <-
                                                                                                  --
                                                                                                  --
                                                                                                 <--
                                                                                                 ---
                                                                               --------->ANAC46<----
                                                                               ----------->HVH21 <--
                                                                            --------->TOE1(2) ------
                                                                           --------->YAB1     <-----
                                                                    ------>MYB46(1)          <------
                                                                    --------->ANAC46       ---------
                                                                    --------->ANAC58   <-------TEIL<
                                                                    --------->ANAC58   =============
                                                                    ------>MYB83 <---------LBD16----
    <----------DOF2                                               --------->DEAR3(1)   ------>ZmHOX2a(2)
---->KAN4(2)             <---------ANAC58           <----------DOF2--------->ABI4(1)  ==============
--->KAN4(1)           <----------DOF2        <---------ANAC58     --------->AtMYB61   <------ZmHOX2a(2)
----KAN4(1)     <----------DOF2              <---------ANAC46     <---------ALFIN1   --------->ARR14(2)
---KAN4(2)<----------DOF2<---------ANAC58    <---------ANAC58    --------->MYB46(3)  <---------ARR14(2)
->GT1  <------------------------ANAC81<----------DOF2           ------>NtERF2 --------->SPL7<-------
 
atctcttctttctctttctctttctctttcttgttcttgttctttcttccgtctactttccatttgccaccaccccattcatacgacggatccatccacg  63600
       <---------ALFIN1
    ------->GAMYB
   <---------ALFIN1
 ----------->RAV1(1)
--------RAP2.3(1)
--------ATERF1(1)
------->RAP2.6(2)
---->NtERF2
-------ATERF1(2)
------>ATERF1(2)
-----ATERF1(1)             --------->LBD16                                    <---------MYB52(1)
-------DEAR3(1)          <---------LBD16                                <----------DOF2
--->ANAC46          --------->O2                                        ============================
----DEAR3(1)      <---------ALFIN1                                   ------>ZmHOX2a(2)
---LBD16        ------>NtERF2                                   <-------TEIL <-------GAMYB
>MYB46(3)      --------->DEAR3(1)            <---------ANAC58  --------->ARR14(1)                 --
------NtERF2--------->ANAC46       <------NtERF2              --------->ARR14(2)            --------
==================HOX2a_HOX2a     ------>NtERF2               --------->ARR11(1)            <-------
----->RAP2.6(3)--------->ANAC46  --------->DEAR3(1)           <---------GLK1(2)             <-------
==================HOX2a_HOX2a   --------->DEAR3(2)          ----------->ARR10=======================
--ALFIN1   ------>ZmHOX2a(1) --------->SPL7  <---------ANAC58 <---------ARR14(2)        ------>ZmHOX2a(2)
 
gcggcaacaccctcctcgcagccacttctccggatgccgacgctgtttccttgtctgaaaccctagattcgatctctttcggttgattcgatctcgcgta  63700
           <---------ANAC46
           <---------bZIP60(2)                                                <---------REM1(2)
          <-----------------------TaNAC69(2)                                  --------->ZAT14
  --------->GLK1(2)                                     <---------ARR14(2)    <---------ZAT14
 <---------GLK1(2)                                 ----------->GT1      --------->ARR11(3)
 --------->ARR14(2)                              <------ZmHOX2a(1)      --------->GLK1(2)
 <---------ARR14(2)                         <---------ANAC46            <---------ARR11(3)
=====================bZIP_DOF               <---------HSFB2a(2)   --------->ANAC58           <xxxxxx
------->YAB1 --------->ALFIN1               --------->HSFB2a(2)--------->MYB46(3)        --------->GLK1(2)
->ANAC55(2)<---------O2                    <---------LBD16     <---------ATHB12          --------->ARR14(2)
--ANAC46 <---------ZAT14          --------->GLK1(2)--------->At4g35610 <---------GLK1(2) ------->TEIL
--ANAC55(2)<---------TGA1a       <---------GLK1(2)--------->ALFIN1--------->ANAC58       <---------ARR14(2)
=====================MYC_MYB   <---------YAB1--------->LBD16 --------->WOX13(1)<---------ALFIN1-----
 
atcagattctggtgaagtgggaacagaaaccattacgattctttcttccggaggaggtgaatcccaatcacccaaaatctctacactctctgaatctgaa  63800
                                                    <---------ANAC58                         <------
                                                    --------->ANAC55(2)                     --------
                                                    <---------ANAC58                 --------->ANAC58
 <-----------GT1                                <----------DOF2                      --------->ANAC58
xxxxxxxxxxsmallRNA(si3)                <---------DAG2         --------->ATHB12       --------->ANAC46
-->TEIL --------->TOE2(3)              <----------DOF2   <---------MYB46(3)       ------->GAMYB   --
 
cgtttctccattcttaaaaactttggaatgcgaaatttgcgactttatgggctttacgggctgtttgatttgaaagattagacaactcacacaacttatt  63900
               --------->At4g35610
          <------MYB83
          <------MYB46(1)
     <---------TOE1(3)
     <---------TOE2(3)
    --------->MYB52(1)         ------>ZmHOX2a(1)    <---------YAB1
    <---------DOF5.7(2)    <---------ALFIN1         ------------>CBF
    <-----------GT1       -------->P            <-----------HVH21                             <-----
  <---------MYB52(2)    --------->MYB46(3)      <-----------TGA1 <---------ZAT14              <-----
--------->WOX13(1)      --------->AtMYB61      --------->ANAC46--------------->AtSPL3         <-----
------CBF<---------AtMYB61------>MYB83    --------->AtMYB61    --------------->AtSPL8        <------
->ATHB12<---------MYB52(1)------>MYB46(1)--------->MYB46(3) ----------->HVH21     <---------DAG2
---------->CBF <---------At4g35610     <-----------GT1    --------->ALFIN1        <----------DOF2
 
gggcaattaacgttggtctgctcaacaccaactcctcactagaaaccactccgtcatcaatgtgtgactgtacatcaaaataaaactttttttttttggt  64000
                                              -------->ATHB1
         ------>ZmHOX2a(2)                    --------->YAB1
        <------ZmHOX2a(2)                    <---------YAB1
       <---------ARR14(2)                    <---------ATHB12
       <---------AGP1                 <--------ATHB1
       --------->AGP1--------->YAB1   --------->YAB1
       <---------ARR11(3)             <---------ICU4
      <---------CCA1(2)               -------->HAHB4
----ANAC58          <---------TOE2(3)<---------ATHB51
--GAMYB--------->ARR11(3)            --------->ICU4                     <-----------RAV1(1)
----ANAC58      <---------At4g35610--------->YAB1            <------------CBF         <-----------GT1
---MYB46(3)    ------->TEIL     <----------DOF2<------------CBF----------->GT1   <------------CBF  -
 
tgcaaacgtagatctatgtagctaagataacctctctttaataattctatcattgtgttttccaaattgttatatatgttgtgtcattgtaacgcgttgc  64100
                                            <---------ZAT2
                                            <---------At4g35610
   <----------ID1               --------->ANAC46
--------->DAG2               --------->ZAT14--------->At4g35610     <---------WOX13(1)  <---------WOX13(1)
--------->DOF2           <-----------GT1    --------->ZAT2      <---------MYB59    <----------DOF2
 
cataaagcgacaacatcgttgcaactttcaactatactcaaatagccagcttgcagagtattttttgcctaattgaattgtttgaactttgatttatagg  64200
                                                         --------->TOE2(3)
                                                       -------->P
                                                       ------->TEIL
                                                     ------>ZmHOX2a(2)
                                                   <---------ARR11(3)
                                                   --------->ARR11(3)          >>>>>>>ZML2        --
                          <-----------RAV1(1)  --------->YAB1      <---------ALFIN1       <---------
              <------ZmHOX2a(1)            --------->TOE2(2)      <---------ZAT18       <----------DOF2
            <---------TOE2(3)            -------->P----------------------->TaNAC69(2) ---------->ID1
 
tttcaaaccgagtttgaggatgatcacatatgtggctattgactaacctatggtgatctacctctatagaccacttctagttctagtttggctcttttgt  64300
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AGI:  At1g01130.1   
Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47170.1); contains domain CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE-RELATED (PTHR22982); contains domain CBL-INTERACTING PROTEIN KINASE-RELATED (PTHR22982:SF45)
Range:  from: 61963    to: 63811    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g01140.1   
Description:  CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); kinase. similar to CIPK23 (CBL-INTERACTING PROTEIN KINASE 23), kinase [Arabidopsis thaliana] (TAIR:AT1G30270.2); similar to CIPK23 (CBL-INTERACTING PROTEIN KINASE 23), kinase [Arabidopsis thaliana] (TAIR:AT1G30270.1); similar to CBL-interacting protein kinase 12 [Populus trichocarpa] (GB:ABJ91219.1); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threon
Range:  from: 64166    to: 67625    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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