Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     --------->ARR14(2)            --------->ATHB12           <---------YAB1          <----------DOF2                                             <---------YAB1         <-----------------AGL3                                     --------->YAB1         --------->YAB1<---------At4g35610                   --------->HSFB2a(2)         ==============================================================MADS_MADS -------->ANAC58   <---------ARR14(2)                  <---------------AGL15                        - -------->ANAC46 <---------ANAC58           <<<<<<<<<TBF1    <---------HSFB2a(2)           --------->ATHB12 -------->ANAC58 <---------ANAC58 <-----------GT1      --------------->AGL15          <---------ARR11(3) --DOF2<---------ARR11(3)      <----------DOF2   <----------DOF2   ----------->GT1    --------->ARR11(3)   agacgacactatctttattgggttctgcttctcctttaactacttcttcttctttttcttcatcgagaactgataattctgaagaagagaccttgatttg  46600            ---------->DOF2       --------->At4g35610       <---------At4g35610 <---------MYB46(3)    ---------->DOF2  ---------->DOF2                    --------->GLK1(2) -------->ALFIN1<----------ID1       <---------YAB1                       <---------GLK1(2)    >>>>>>   aagtggttgagctacaaagggacgagaaagagaagagtgatgaaaagaattggaagaagagaattgaagtttcagagattctaagtaagagtaagaagaa  46700                                                                                  <------NtERF2                                                                                 ------>NtERF2                                                                                 <---------RAP2.6(3)                                                                                 <------NtERF2                                                                                --------->ANAC58                                                                                --------->DEAR3(1)                                                                                --------->ANAC58                                                                                --------->RAP2.3(2)                                                                               --------->ATERF1(1)                                                                               --------->RAP2.3(1)                                                                              <---------ATERF1(1)                                                                              --------->ATERF1(1)                                                                   <---------ANAC58   --------->ATHB51                                                         --------->MYB52(1)  <---------ATERF1(1)                                                        --------->CCA1(2)  <------ZmHOX2a(1)                                                       --------->ARR11(3)  --------->ATERF1(1)                                                 >>>>>>>>>TBF1     <---------ANAC58  --------->ICU4       <---------TOE1(3)                   --------->HSFB2a(2) <---------GLK1(1)--------->RAP2.6(2)       <---------TOE2(3)                   <---------HSFB2a(2) --------->GLK1(1)--------->RAP2.3(3) - >>>TBF1                --------->GLK1(1)<------ZmHOX2a(2)--------->DAG2<-----------RAV1(2)   <------ZmHOX2a(1)   gaagagattagggttttgtatttgggaattgcattgtgagacgatcgagaagaagaagataagggaattgcgaagcaggaggccgccattatcgaaggac  46800                       --------->ATHB12                       --------->YAB1                       ----------->GT1         <---------AHL20(2)         --------->ATHB12         --------->ATHB51                                                        <-----------GT1         --------->AHL20(2)                                          <-----------HVH21        <---------AHL20(1)                                <----------ID1  <-----------HVH21        --------->AHL20(2)                           --------->AHL20(2) <---------MYB46(3)       <---        <---------AHL20(2)--------->AHL20(2)         <---------AHL20(2) <---------DEAR3(2)       ----    --------->AHL20(2)<---------YAB1           ----------->GT1  <---------ARR14(2)   ----------->GT1  ----------->GT1     --------->ICU4      --------->AHL20(2)    --------->ARR14(2)   --------->ANAC46 --------->DOF2     --------->YAB1---------->DOF2   --------->AHL20(2) --------->ETT(1)         -----   cagaaagtaaattatttgagaagaatgattaaaaaaaaaagaaatgaaatagaaattaatagaacaaatcgggtcgggtcatttaacccgttacaatcct  46900                 <---------At4g35610                 --------->At4g35610               <-----------RAV1(2)              --------->TGA2(2)             <-----------TGA1             <-----------HVH21            <---------O2            --------->O2            --------->bZIP60(2)            --------->ANAC58            --------->ANAC46            --------->ANAC58            --------->TGA1a            --------->bZIP60(1)           <---------TOE1(2)            <---------bZIP60(1)          <-----------RAV1(2)       --------->ANAC46             <---------ANAC58                                               <-    --------->ARR14(2)              --------->ANAC46                                            -----    <---------ARR14(2)              <---------ANAC58                  --------->DAG2           ------ ------ZAT2 --------->REM1(1)     <---------ANAC46                   ---------->DOF2 --------->WOX13(1) ----->ZAT2 ==============================bZIP_DOF                  ---------->DOF2<---------YAB1  -- ->ZmHOX2a(1)--------->TOE2(3) <----------DOF2         <---------AtLEC2     ---------->DOF2--------->AHL20(2)   gctcggtattcgctacgtcagatgagacactctctttcgcgtagcaggttttgtttttcatgaaataaacaaaaggcccaaagttataaatcaaaaaata  47000                                                       <---------AHL20(2)                                                     <----------DOF2                                                ------>MYB83                                                ------>MYB46(1) --------AHL20(2)                             <---------MYB59        --------->TOE1(2)         ------ ---->AHL20(2)                                <---------MYB46(2)  ---------->DOF2              ------ --->AHL20(2)   <---------YAB1           <----------DOF2      ---------->DOF2                  <----- ------->AHL20(2)  *TSS                  <---------DAG2--------->AHL20(2)<------ZmHOX2a(1)     <-----   aaaaattattcaaacattttcatttcttcaagtctcttattccctttaccaaacactttaattacaaagaaagtaggagccatgaaattagaaccagtgc  47100                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                                                                                   <XXXXXXXXXXXXXXXXX                                                                            <---------MYB46(3)                            --------->YAB1                                 --------->ALFIN1 --->ZAT14             ------>ZmHOX2a(1)                                 <------MYB46(1)--------->GLK1(2) ------>CBF           --------->TOE2(3)      --------->REM1(1)           <------MYB83  <---------GLK1(2) ----ZAT14        --------->YAB1        --------->ZAT6          <----------CDC5  <---------ZAT6 ----ZAT18       <---------ATHB12 <---------ICU4   --------->REM1(1)    <---------AtMYB61       <----   aatcttgtctaatggcccattcatcctcaatcttcattctgaccactacatctacaactccttggctctgagggaaggtggtagtgatagaatctgctat  47200                                                            <---------ZAT14                                                            --------->ZAT14                                                           ----------->RAV1(1)                                                     --------->ANAC58                                                     --------->ANAC46                              --                                                     --------->ANAC58                              --                                                 --------->AtLEC2                                  <-        <-----------HVH21                     <---------MYB52(1)       <----------DOF2             <-   <---------GLK1(1)                         <-------GAMYB--------->ANAC46 <---------ARR11(3)      -- XXMIR3434                                  ------>ZmHOX2a(2)  <<<<<<<<<TAC1 ------>ZmHOX2a(2)     <- -----YAB1                              <---------ATHB12--------->AtMYB61  --------->ARR11(3)     <--   gtttgaactccctcagaggtttgaagctatattttgacccaaatgatcgttatgcaaaccacaacactgtcttctttgatcttactatgaagaagtctgc  47300           ---------->DOF2     <---------TOE2(3)          --------->CCA1(2)     <---------TOE1(3)       --------->ANAC58 ------->ARR11(3)            --------->ANAC58                                            <---------AtLEC2 ------->ARR14(2)        --------->ANAC46               ---------->DOF2        <---------At4g35610 --------ARR11(3)        --------->ANAC58             <------ZmHOX2a(1)        --------->At4g35610 --------ARR14(2)        --------->ANAC58       ---------->DOF2           --------->ALFIN1 ------->GLK1(2)     --------->YAB1       <---------REM1(1)           <---------ZAT14    <---------ANAC58 --------ARR11(1)   <---------YAB1--------->AtLEC2   <----------ID1   --------->ZAT14    <---------ANAC58 -------CCA1(2)     <---------AHL20(2)   ------------------------>ANAC81<---------ANAC46 <---------ANAC46   aaatcttgaggtttaaagctatattataagcaagctatgcagagatgaagcaaagaggaaaagagttttctgtgctgtggaagctgtattggcatgtatt  47400                                                                                               <-----                                                                                               ------                                                                                             <-------                                                                                            ---------                                                                                            <--------                                                                                        <---------ICU4                                                                                        --------->YAB1                                                                                       --------->AHL20(2)                                                                                       --------->ICU4              <---------ANAC58        ------>ZmHOX2a(1)                                <---------AHL20(2)              <---------ANAC58        <-----------RAV1(1)                             <---------AHL20(1)              <---------ANAC46      ----------->RAV1(2)                               --------->AHL20(2)      --------->ANAC46     <---------SPL7                                  --------->LBD16 --------->YAB1 <---------YAB1      <---------WOX13(1)                              --------->MYB46(3)<---------ATHB51   gttcttatacgagattgtgtgtaattggtggtactggctcctgttgcagagcccatcttgtttagagtgtaatcacccgaggttgcaaaataattatctt  47500  Previous    Next  AGI:  At1g01080.1    Description:  33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative. similar to CP33 (PIGMENT DEFECTIVE 322), RNA binding [Arabidopsis thaliana] (TAIR:AT3G52380.1); similar to 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative [Arabidopsis thaliana] (TAIR:AT5G50250.1); similar to 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative [Arabidopsis thaliana] (TAIR:AT1G60000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24325.1); contains InterPro domain RNA recognition moti Range:  from: 45296    to: 47019    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g01090.1    Description:  PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transferring). similar to AT-E1 ALPHA (pyruvate dehydrogenase complex E1 alpha subunit), pyruvate dehydrogenase (acetyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G59900.1); similar to unknown [Populus trichocarpa] (GB:ABK95003.1); contains InterPro domain Dehydrogenase, E1 component; (InterPro:IPR001017) Range:  from: 47485    to: 49286    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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