Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           --------->TOE2(3)                         <---------------AGL15                         --------->TOE1(3)                         --------------->AGL15                        ----------------->AG                        ----------------->AGL2                                         --------->PCF2                        <-----------------AGL2                                   <---------ATHB12 ------->ARR11(3)       <-----------------AG                                    --------->GLK1(2) ------>YAB1       --------->YAB1           --------->GLK1(2)             --------->DAG2 -----WOX13(1)    <---------YAB1    <------NtERF2               --------->AHL20(2)--------->YAB1 -->ATHB12      --------->YAB1<---------WOX13(1)      <---------ATHB12   ---------->DOF2 --ATHB12 ------->TEIL  <-----------------AGL1 --------->WOX13(1)<---------AHL20(2)    --------->ANAC46   tgatattgactgaatctaacatcataaccctaattggcagagagagaatcaatcgaatcaagagtattaaatggaaaaagcgaatcaagaccccacaagg  32800                                                                                                  <--                                                                                                  <--                                        <---------ATHB51         ------->TEIL                     ---                                  --------->ANAC58            --------->ANAC55(2)           ---------             <---------At4g35610  --------->ANAC58           <---------TOE2(3)              <--------          ---------->DOF2      --------->KAN4(2)          --------->DOF5.7(2)              ------>MYB83        ------>ZmHOX2a(1)     --------->YAB1        --------->ARR11(3)                     ------>MYB46(1)        ============================HOX2a_HOX2a     <---------AHL20(1)                   <---------MYB59        ========================HOX2a_HOX2a        <---------CCA1(2)         ---------->DOF2---------       --------->TOE1(3)     <------ZmHOX2a(2)  <-------TEIL <---------TOE1(3)          -------------       --------->TOE2(3) <------ZmHOX2a(2) <---------TOE2(3)<---------DOF5.7(2)         -------------   gaaaacaatccttaaagcagacttgagatcgatcatacccaaattatggattcatatattgttaacgtatcgattactgaaaagatgtataccaaatctg  32900  <----------DOF2  <---------DAG2 -------ZAT14                          --------->ANAC58 -------ZAT18                          --------->ANAC46 ------>ZAT14                     --------->CCA1(2) >GLK1(2)                      <---------TOE2(3)                         --------->ANAC58   ------>ZmHOX2a(2) -ARR14(2)                  <---------WOX13(1)       <---------HSFB2a(2) --------->ANAC58 <---------ARR11(3) >ARR14(2)                --------->ATHB12----------->RAV1(1)           --------->DAG2    --------->ARR11(3) ---->AGL1               <---------YAB1--------->ANAC58                ---------->DOF2--------->YAB1 ---->AG              <---------MYB46(3) <----------ID1      --------->AHL20(2)    <----------DOF2   ttcactttttctctatagactcgatggatgattgagatttgaagcaacaaaatacccagaagattaaacatggaaaagcatcaaactttgatgatcttag  33000                                                 <---------MYB52(1)                                           --------->MYB46(3)           --------->YAB1                                          ---------->DOF2              --------->ICU4                                      --------->ANAC58                --------->ANAC58         ----------->GT1         ------>ZmHOX2a(2) <---------MYB46(3) --------->ANAC58       ---------->DOF2 ------->TEIL   --------->ANAC58       <----------DOF2                  -------   aacgatgacaaaagaaaaaaaaacgtacctttggatcgaaacgaaacagccgattgttgttttctttatcgcaaggatgatgaagaaactttgggagaga  33100                                                                --------->ANAC55(1)                                                                --------->ANAC46                    <---------STY1(2)                           --------->ANAC55(2)                    --------->STY1(2)                          <---------LBD16                   --------->ANAC58                         --------->CCA1(2)                     <--              <------MYB83                                 <---------ARR11(3)                     ---              <------MYB46(1)----------->GT1         *TSS  --------->ARR11(3)       <---------YAB1<--             <---------AtMYB61                      <---------ALFIN1<------ZmHOX2a(2)--------->YAB1            <---------MYB52(1)         ------->TEIL --------->AtMYB61               <---------TOE2(3)    ---------->DOF2--------->ANAC58 ----------->GT1 --------->DEAR3(1)           <---------AHL20(2)-- ---->GT1  <-------GAMYB  --------->ATHB12         --------->MYB46(3)     <----------DOF2 --------->ZAT6   aacaagtgaagcccgttggtctagcaagtgattgtaaaatgtatatatgagtcaccaccgagatatacggatcaaacttttatattatcgtaacactcac  33200             --------->AHL20(2)            <---------ATHB12            --------->ICU4            <---------ATHB51        ------------>CBF        <---------ATHB12                                    --------->ANAC55(2)       --------->ANAC58                                     <---------ANAC55(2)       --------->ANAC46  --------->CCA1(2)                  --------->ANAC58       --------->ANAC58 <---------ARR11(3)                  --------->ANAC46     --------->ZAT6     --------->ARR11(3)                <-----------GT1                   ------>ZmHOX2a(1) -------ZAT14<---------AHL20(2)                       <---------YAB1                <-----------HVH21 ------>ZAT14<--------HAHB4                   <----------DOF2    --------->YAB1   <---------ANAC58 -------ZAT18-------->ATHB1<-----------GT1    <---------DAG2--------->ANAC58      <---------RAP2.6(2) ------->ZAT6--------->ATHB51    <----------DOF2      <---------AHL20(2)          <---------ANAC58   tacactaccactcaattatttacaaagatttacatctttttaaaaatactttattttttattacgaaacatagtttgtgtttttgcggtcactcctataa  33300                                           <------MYB83                                           <------MYB46(1)                                          <---------MYB46(3)                                          <---------AtMYB61                                          --------->MYB59                                          --------->MYB46(2)                                  <------                                          --------->MYB111(2)                           <---------ARR11(3)                                          --------->MYB111(1)                           <-----------ARR10                                      <------MYB83                                      --------->ARR14(2)                                      <------MYB46(1)                                   <---------ARR14(2)                                 --------->AHL20(2)                                     --------->ARR11(3)                                 --------->AHL20(1)                                    <---------CCA1(2)          <---------ANAC58       <---------AHL20(2)                                ----------->GT1          <---------ANAC58      <---------ATHB12      --------->CCA1(2)        <---------AHL20(2)       <---------ARR14(2)       <---------ATHB51     <---------ARR14(2)        --------->AHL20(2)       --------->ARR14(2)       --------->AHL20(2)   --------->ARR11(3)        --------->AHL20(1)      <------ZmHOX2a(1)         <---------AHL20(2)   --------->ARR14(2)       --------->AHL20(2)   --   tctatgtaggatacttgcattacatttttcacaaataatttggtttggtagcaaggatatggctcattcagtgagaacaaaaaaattgtatatctactca  33400            ------>MYB83            ------>MYB46(1)               --------->STY1(2)                            <---------YAB1 ---ATHB12<---------------AGL15----------->GT1                               <---------ANAC55(2) ------->YAB1          ----------->GT1    <---------STY1(2)   <----------DOF2--------->ANAC55(2)   ttcatcagtaaaccaaattaagagattgaaatattgtataaactagctacacaatataagccttctttaggcctctattacttaagcttgtaatagggaa  33500                                                                                ------->GAMYB                                                                               <---------MYB52(2)                                                                               --------->MYB46(3)                                                                            <---------WRKY38(1)                                   <----------DOF2                     <---------MYB52(1)                                <---------ARR11(3)                    <-------GAMYB                                --------->ARR11(3)                   <---------ANAC58                      <---------ANAC46                               <---------ANAC58                      <---------ZAT6  ---------->DOF2   <----------DOF2--------->ALFIN1       <---------REM1(1)  ----------->GT1              <---------DAG2<---------ANAC46               <   aatgttgtaatgtaggcccaagtagtgtgagtaaaatctttaaggcccagcctagcacctttgggcatttggcgttgggcaacgagcgccttcaagtttg  33600                 <---------ICU4                <---------YAB1                                                         <-----------GT1                --------->ICU4                                                     --------->YAB1              --------->YAB1                                                      <---------YAB1              -------->ATHB1                                                    <--------HAHB4              <---------ICU4                                                    <---------ICU4              <--------HAHB4                              <----------DOF2       --------->YAB1      -             --------->ICU4                            <-----------GT1         <---------YAB1     <--            --------->GLK1(2)   ---------->DOF2     <---------REM1(1)        --------->YAB1       ---  --------->MYB52(1)          --------->AtMYB61     ----------->GT1       <----------DOF2       <---- ---------MYB52(2) <---------YAB1   <---------------------WRI1 <-----------GT1<-----------GT1 -------   aaacaaacagagagaatcattatgaagaaacaccaaaagacaaaactttctaagttgtaacttttgtacagttcatcttttatcattataaactatttat  33700  Previous    Next  AGI:  At1g01050.1    Description:  ATPPA1 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 1); inorganic diphosphatase/ pyrophosphatase. similar to ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3), inorganic diphosphatase/ pyrophosphatase [Arabidopsis thaliana] (TAIR:AT2G46860.1); similar to unknown [Populus trichocarpa] (GB:ABK94595.1); contains InterPro domain Inorganic pyrophosphatase; (InterPro:IPR008162) Range:  from: 31170    to: 33153    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g01060.1    Description:  LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor. similar to CCA1 (CIRCADIAN CLOCK ASSOCIATED 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46830.1); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447) Range:  from: 33666    to: 37840    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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