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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                   --------->ARR14(2)
                                                                   ---------->TaMYB80  <-----------HVH21
                            <---------LBD16            <---------PCF2        ----------->GT1
                           <---------LBD16            <------NtERF2<---------ARR14(2)  <-----------TGA1
                        --------->ARR11(3)           <---------MYB46(3)      <------MYB46(1)
                        <---------ARR11(3)          <---------ANAC46         <------MYB83
        <---------ZAT2 <---------CCA1(2)            --------->ALFIN1        --------->MYB59
--->GAMYB             ------->TEIL    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    --------->MYB46(2)
 
cctcttcagagagctcgtcccgatgtatatctcgggactaatgagagaactcttggtggggacagaagggaatatgggtttggtaaacttcgtcacaaca  28100
                                                                                     <-----------HVH21
                                                                                   --------->TOE2(2)
                                                                                  <---------ANAC55(1)
                     ------>MYB46(1)                                              <---------ANAC58
                     ------>MYB83                                                 <---------ANAC46
                   <---------MYB55(2)               ------>ZmHOX2a(1)             <---------ANAC58
                   --------->MYB46(3)              xxxxxxxxxxxxxxxx>smallRNA(i) <-----------GT1
                  --------->ANAC46        <---------MYB46(3)                 <---------MYB46(3)
                  --------->ANAC58        <-----------RAV1(1)           <---------HSFB2a(2)     <---
                  --------->ANAC58      --------->At4g35610             --------->HSFB2a(2)    <----
           --------->GLK1(1)            <---------At4g35610          --------->GLK1(2)         <----
           <---------GLK1(1)          <------ZmHOX2a(1)            <---------At4g35610     ---------
 
ttgtatttgggcagaaatctcacccaacttatggtattagaggagctgttgcatccttcgatgttgtgagagcttctggattgttacctgtgagagatgc  28200
                                                                         <---------YAB1
                                                                       <------ZmHOX2a(2)
                                                                      <-----------ARR10
                                                                      <---------ARR14(3)
                                                                      --------->ARR14(3)
                                                                      --------->ARR11(3)
                                                                  <---------At4g35610
                                                           --------->ATHB12
                                                    <---------ANAC58  <---------ARR11(3)           <
                                                    <---------ANAC58  <---------ARR14(2)           -
                                                    <---------ANAC46  --------->ARR14(2)         <--
                                                   <---------MYB46(3) <---------AGP1            ----
                                         <---------ICU4    <---------MYB46(3)  ----------->GT1 -----
-------DOF2                   ----------->GT1  ----------->HVH21<---------HSFB2a(2)            -----
-----ANAC58                ---------->DOF2    <---------ANAC46  --------->HSFB2a(2)            -----
-----ANAC58              --------->YAB1 <---------YAB1 <-------TEIL ----------->ARR10        <------
>CCA1(2)          <------ZmHOX2a(1)    <---------TOE2(3)<---------AtLEC2------>ZmHOX2a(2)    -------
 
ttttgagaaggaagtagaagaggatttatcaaaaggaaaattgatgatggctgatgggtgcatggttgcagaagatcttattgggaaaatagtgacagcc  28300
       ---------->DOF2
     --------->LBD16
     <---------HSFB2a(2)
     --------->HSFB2a(2)
    <---------LBD16
    <---------HSFB2a(2)
    --------->HSFB2a(2)
    <---------ANAC46
   <---------LBD16
--------->KAN4(2)
----------TaMYB80                                                             <---------ARR14(2)
-------->HSFB2a(1)                                                            --------->ARR11(3)
-------ALFIN1                                             <----------DOF2     <---------ARR11(3)
----->LBD16                                            --------->ARR11(3)    --------->GLK1(1)
---->RAP2.3(2)            <-------TEIL                 <---------ARR11(3)    <---------GLK1(1)
---->DEAR3(1)         <---------TOE2(2)        <---------ZAT18               <---------RVE1(1)
---->RAP2.6(2)     <---------ANAC46            --------->ZAT18               <---------CCA1(2)
---At4g35610      <---------TOE2(3)            --------->ZAT14      ---------->DOF2       --------->STY1(1)
-->At4g35610  <----------DOF2                  <---------ZAT14     <------ZmHOX2a(1) --------->PCF5
 
gcacattccgggaagcggttttacgtagattcaatttgttatgacatgagtgcagaaacatctttccctaggaaagagggatatcttggtcccctagagt  28400
                --------->YAB1
             <---------------AGL15
             --------------->AGL15
          ------>NtERF2
         --------->WRKY38(1)
         --------->WRKY45
       <---------At4g35610
       --------->At4g35610
     <-------TEIL
     --------->SPL7                               <---------AHL20(2)
     ------->TEIL                                 --------->AHL20(2)
   <---------SPL7   --------->ANAC46           --------->AHL20(2)
  --------->ANAC58  --------->ANAC58          <---------ATHB51
  --------->ANAC55(1)                         <---------ATHB12
  --------->ANAC46  --------->ANAC58 <---------ARR11(3)                                            *TSS
  --------->ANAC55(2)    --------->DAG2       --------->AHL20(2)     ------>ZmHOX2a(1)            ==
  --------->ANAC58  --------->AtLEC2 --------->ARR11(3)       ------------>CBF   <-------TEIL     ==
  <---------ANAC55(2)   ---------->DOF2       <---------AHL20(2)     <----------DOF2              <-
 
acaacacgtacgctgactattacaagcaaaagtaagaaaacatcttcaaataattttttgatttcttcaatcctttttctaagtttcattagatactaat  28500
                                           <---------ANAC46
                                        <---------AtMYB61
                                    =======================================bZIP_DOF
                                    --------->At4g35610
                                    ----------->RAV1(2)
                                    <---------At4g35610
                                    <---------O2
                                    --------->O2
                                    <---------TGA1a
                                    --------->TGA1a
                               --------->TGA1a<---------ANAC46
                               ============================================bZIP_DOF
                               --------->ANAC46
                               --------->ANAC58
                               --------->ANAC58                 ---------->DOF2
                     <---------AtLEC2   --------->ALFIN1     --------->ANAC58
       --------->ARR11(3)   <------NtERF2<---------ANAC46    --------->ANAC58
=========================================bZIP_DOF   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
==============================================bZIP_DOF   <------ZmHOX2a(1)         <---------YAB1
---------DOF2  <------ZmHOX2a(1)<-----------HVH21 <XXXXXXXXXXXXXXXXXXXXMIR838    --------->YAB1
 
acttttctaatatcacgaggacttacatggcctcaagtcacctgtggtgttgtgcaagaaggagaagcaaagtctgtctatgtattatgagatagctact  28600
                                                                                                 <--
                                                        <---------TOE2(3)                        ---
                                  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            <---
                                  XXXXXXXXXXXXXXXXXXXX>MIR838    <---------TOE2(3)              ----
               <---------------AtSPL8               ----------->RAV1(2)                   ----------
             <-----------RAV1(1)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <---------TOE2(3)
         --------->CCA1(2)       xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                     --------->YAB1
       <------ZmHOX2a(1)      <----------DOF2     <---------ALFIN1                   --------->HSFB2a(2)
 
tctatggctaggatatatgttgtacaagaccggcttttcttctacttcttgcacaacctgaggttattgaggctatacaagtcttcttctataatgttat  28700
                                                           <---------ANAC55(2)
                                                           --------->ANAC55(2)
                                                           <---------ANAC58
  <---------ANAC55(2)                              --------->ALFIN1     <---------HSFB2a(1)
  <------MYB46(1)                                 <-------PIF5          --------->HSFC1(2)
  <------MYB83                     --------->TOE2(3)       <---------ANAC46
 --------->MYB59                ------->GAMYB    <---------ANAC58       <---------HSFC1(2)
 --------->MYB111(1)           <---------MYB55(2)<---------ANAC46       --------->HSFB2a(1)        -
-------AHL20(2)                <---------MYB111(2)------->PIF5         ------->TEIL               <-
------>ATHB12             --------->ANAC58       <---------bZIP60(2)  <---------ARR11(3)         <--
------AHL20(2)            --------->ANAC46     <------ZmHOX2a(1)    --------->ANAC58 <---------TOE1(2)
----->AHL20(2)            --------->ANAC58 ---------->DOF2 <---------ANAC58  <----------DOF2    <---
->GT1        --------->ATHB12  --------->MYB46(3)<---------ANAC58   --------->ANAC58------>ZmHOX2a(1)
 
ttattaggtatggagttgatttgaactgtaagcaacaacctttgattaaaggacgtggtgtttcgtattgcaagaaccttctttctcctcggtttgaaca  28800
                                <---------AHL20(2)
                               <---------AHL20(1)
                               --------->AHL20(2)
            --------->GLK1(2)  --------->AHL20(1)                                        --------->ARR14(2)
----------->GT1                <---------AHL20(2)     <---------TOE2(3)                  <---------ARR14(2)
-------->MYB59           <-----------GT1        --------->AHL20(2)                  ----------->GT1
----------RAV1(2)     <----------DOF2    --------->MYB52(1)  <----------DOF2     ---------->DOF2
-------MYB52(1)       <---------DAG2--------->YAB1   <-----------GT1   <---------ANAC58  --------->GLK1(2)
--------HVH21      <-----------GT1<---------TOE2(3)  --------->MYB52(1)<---------ANAC58  ------->TEIL
 
gtcaggttataagaaattcttttcactttaacaatttaatgatataaccgataaattaacgcttctttgttttttcttgcaattcaaaggtgaatctgag  28900
                              <---------ALFIN1
                   <---------ANAC55(2)
                   --------->ANAC55(2)                           <-------TEIL
                   <---------ANAC46                         <---------ANAC58             <---------ARR14(2)
                   <---------ANAC55(1)                      <---------ANAC46             --------->ARR14(2)
                   <---------ANAC58                         <---------ANAC58 <---------ZAT2
                   <---------ANAC58                      <----------DOF2   --------->LBD16
                 <-----------GT1----------->RAV1(2)<---------ARR14(2)     <---------TOE2(1)      ---
   ------>ZmHOX2a(1)   <---------CCA1(2)           --------->ARR14(2)     <---------TOE1(1)      <--
 
acagtccttgataagacatattacgtgtttcttccacctgaactatgcgttgtgcatccgctttcgggttcacttatccgaggtgctcagaggttaccct  29000
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AGI:  At1g01040.1   
Description:  DCL1 (DICER-LIKE1); ATP-dependent helicase/ ribonuclease III. Identical to Endoribonuclease Dicer homolog (CAF) [Arabidopsis Thaliana] (GB:Q9SP32;GB:Q9FDY6;GB:Q9MAN0); similar to DCL3 (DICER-LIKE 3), RNA binding / ribonuclease III [Arabidopsis thaliana] (TAIR:AT3G43920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24342.1); similar to hypothetical protein OsJ_008882 [Oryza sativa (japonica cultivar-group)] (GB:EAZ25399.1); similar to Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] (GB:ABD32724.1); contains InterPro domain Argonaute and Dicer protein, PAZ (InterPro:IPR
Range:  from: 23146    to: 31227    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At1g01046.1   
Description:  MIR838a; miRNA
Range:  from: 28500    to: 28706    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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