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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                       <---------AHL20(2)
                      <---------YAB1
                   <---------YAB1
                 <---------ICU4
                 --------->AHL20(2)
                 <---------AHL20(2)
                 --------->ATHB51 <---------YAB1
                <---------YAB1   <---------AHL20(2)              --------->ANAC46
                --------->ICU4 --------------->AGL15          <---------ETT(2)
              --------->YAB1   <---------------AGL15          <---------ZAT14
              <--------HAHB4 <---------AHL20(2)               --------->ETT(2)
              <---------ICU4<---------YAB1                    <---------WRKY38(1)
             --------->ICU4<---------AHL20(2)                 --------->ZAT14
             --------->AHL20(2)<---------YAB1              <------MYB83
     ----------->GT1 <---------AHL20(2)                    <------MYB46(1)               <---------HSFB2a(2)
-TOE2(3)   --------->YAB1<---------YAB1  ---------->DOF2   <---------DEAR3(2)   ---------->DOF2
 
tttgaaaatagttagaataattatttttatttttatttttatgggaaagaagttgcacgagtcggtccacagaatgacagaacaaaagcattttagaagt  22700
               --------->ZAT14
             <---------YAB1
           --------->YAB1
          <---------ATHB12
         ------>MYB83
         ------>MYB46(1)
        --------->WOX13(1)
      <---------MYB55(2)
      <---------ATHB12                        <-------TEIL
      --------->MYB46(3)                   <---------MYB46(3)
     ------>MYB46(1)                   --------->ATHB12
     ------>MYB83                  ------->TEIL
     -------->P<---------ZAT14     --------->ARR14(2)                             <---------ANAC58
     --------->ANAC58              <---------ARR11(1)                          --------->DAG2
     --------->ANAC58              <-----------ARR10                      --------->At5g28300
   <---------MYB111(1)             <---------ARR14(2)           <---------AtLEC2  <---------ANAC46
   --------->AtMYB61              <---------ARR14(1)        <---------------AGL15 <---------ANAC58
  --------->MYB46(3)              <---------CCA1(2)       <---------AHL20(2)  ---------->DOF2
  --------->DEAR3(2)           --------------->AtSPL8  --------->YAB1    ----------->GT1      ------
 
ttagaaccaaccaatcactatagttttccacttgtccgtatctcattggttcatcgaatattaacttacatggaaacagtaaaaagcgtggaataagtcg  22800
                                                            --------->YAB1
                                                            --------->AHL20(2)
                                                 <---------ICU4
                                     --------->AHL20(2)   --------->AHL20(2)
                                     <---------AHL20(2)--------->AHL20(2)
     --------->GLK1(1)<---------ARR11(3)   --------->ANAC55(2)       --------->ARR11(3)
----->GT1             --------->ARR11(3)   <---------ANAC55(2)       <---------ARR11(3)        <----
 
taaaactgaaatctaaaaatgaaaagatttcgatttcgatataaatacttaatctttataaaataatatcgaaatcttttcatttttagttttcagtttt  22900
                <---------AHL20(2)
               <---------AHL20(2)                                    --------->LBD16
           <---------AHL20(2)                               --------->ARR11(3)
     <---------ANAC58           --------->AHL20(2)          <---------ARR11(3)                    --
     <---------ANAC58           <---------AHL20(2)         --------->GLK1(1)                     <--
     --------->ANAC55(2)   <---------MYB52(1)           <---------YAB1                       -------
<---------DAG2 --------->AHL20(2)          --------->HSFB2a(2)     <---------LBD16        ----------
<----------DOF2--------->AHL20(1)<---------AHL20(2)  --------->TOE2(2)        --------->TOE1(3)  ---
-------GT1 --------->AHL20(2)   <---------AHL20(1) <---------TOE2(3)<---------HSFB2a(2)  -----------
 
acacttttacttgataaatttaatacatctgttaattttttttcttctaaaattaacatatgatatctattcgggagataaccctaagaaaactgataaa  23000
                                   <---------At5g28300
                                   <-----------GT1                <------------CBF
                              --------->AHL20(2)                <---------YAB1
                              <---------AHL20(2)             --------------->AGL15
                             --------->AHL20(2)             --------->YAB1
                             <---------AHL20(2)            <---------YAB1
         <---------DAG2   <---------AHL20(2)              <---------ARR11(3)
------->AHL20(2)          --------->AHL20(2)              --------->ARR11(3)
-------AHL20(2)           <---------AHL20(1)             --------->YAB1
-->AHL20(2)  <-----------GT1 <---------AHL20(1)         --------->ICU4                       <------
->GT1    <----------DOF2  --------->AHL20(1)          --------->WOX13(1)                  <---------ICU4
------>AHL20(2) ---------->DOF2   <-----------GT1   ------------>CBF----------->GT1  ----------->GT1
>GT1  <-----------GT1    --------->AHL20(2)  <----------DOF2--------->TOE2(3)  ---------->DOF2
 
ataaataagttactttttacaaagtcgaataaattatttacccttctgctttaatggcaattatcttaatattgcaaaaaaaaaaagagagaaatattac  23100
           --------->ANAC58
           --------->ANAC58
       --------->ANAC58
       --------->ANAC58                      *TSS             <---------ZAT14
 --------->MYB52(1)                       ------------------------>ANAC81  ------>ZmHOX2a(2)       -
-----GT1   --------->ANAC46              <------ZmHOX2a(1)    --------->ZAT14           <---------GLK1(2)
 
tacaaaacagaagcaagcaagtggaaaacagaccagaagagagaggaagacgaagagagaaacagaacagagtagggatcgatagaccgtggaatctcag  23200
                                                   --------->TOE2(3)
                                                  --------->YAB1
                                                 --------->ICU4
                                          ---------->DOF2      <---------ZAT18
                                   --------->AHL20(2)         <---------AtMYB61
                                   <---------AHL20(2)    --------->YAB1        <---------ANAC58
        <----------DOF2           --------->AHL20(2)<---------YAB1             <---------ANAC58
-------->YAB1 ---------->DOF2  ------>ZmHOX2a(1) <---------ATHB12            <---------YAB1  -------
 
aatcacaaacactttgcaaaagggttttcaattcctatttatttacaaagaaatcatcaatagtagtggtctctagggttttgcttgctcttcttcgtga  23300
                                          <---------TOE1(2)
                                          --------->SPL1(2)
                                          --------->SPL7
                                         <---------SPL1(1)
                                        <---------SPL7
                                       <---------ANAC58
                                       <---------ANAC46
                                       <---------ANAC58
                                      --------------->AtSPL3
                                      <---------------AtSPL8
            --------->ANAC58      --------->ALFIN1
            --------->ANAC46      -------------->OsCBT
        --------->AtLEC2        <---------ANAC58                <-----------HVH21
    <-----------GT1             <---------ANAC58        --------->TOE2(3)                         <-
<---------DAG2                  <---------ANAC46        --------->TOE1(3)                    <------
<----------DOF2  --------->MYB46(3)   <---------------AtSPL3--------->GLK1(2)                <------
---->HVH21  --------->ANAC58    <---------ANAC55(1)    --------->ZAT6                  <---------ALFIN1
 
cccctttttacctgcaaacaacaacttcaaaattggcgtgtttcgtacggtctatctaaccctaatctgtcacaaaacactcttcttctctcaccccttt  23400
                                                             <---------ANAC58
                                                             <---------ANAC46
                                                         <---------ANAC58
                                                     <<<<<<<<<MYB2
                                                   <------MYB83
                                                   <------MYB46(1)                  <---------TOE1(2)
                                               <---------ARR14(2)       <-----------GT1
--------LBD16        <----------DOF2           --------->ARR14(2)     <-----------GT1       --------
----DOF2        <---------ANAC58           --------->LBD16   <---------ANAC58 <----------DOF2      <
---DAG2         <---------ANAC58         <---------LBD16 <---------ANAC58   ------>ZmHOX2a(1)      -
 
ttctgggtttattcaattctcgtgcttttggttctgttttcttctctggggatttggttttcttgagtgagtttttctcctctttcttatgttcttgatt  23500
               <---------YAB1                                                   ====================
    <---------AHL20(2)                                                          ====================
   --------->AHL20(2)                                                           <------ZmHOX2a(1)
  <---------YAB1--------->YAB1                   ---------->DOF2            <---------ANAC58
<---------ICU4 <---------TOE2(3)        --------->ANAC58                    <---------ANAC58
->ATHB12    --------->ICU4<------ZmHOX2a(1)----------->RAV1(1)              <---------ANAC46   -----
---------YAB1<---------ICU4             --------->ANAC58  <---------YAB1<---------ANAC58     -------
-------->ICU4--------->YAB1    ------->TEIL--------->RAP2.6(2)          <---------ANAC58     <------
 
tgattattatatagaattatggtaatggaggatgagcctagagaagccacaataaagccttcttattggctagatgcttgcgaggacatctcttgtgatc  23600
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AGI:  At1g01040.1   
Description:  DCL1 (DICER-LIKE1); ATP-dependent helicase/ ribonuclease III. Identical to Endoribonuclease Dicer homolog (CAF) [Arabidopsis Thaliana] (GB:Q9SP32;GB:Q9FDY6;GB:Q9MAN0); similar to DCL3 (DICER-LIKE 3), RNA binding / ribonuclease III [Arabidopsis thaliana] (TAIR:AT3G43920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24342.1); similar to hypothetical protein OsJ_008882 [Oryza sativa (japonica cultivar-group)] (GB:EAZ25399.1); similar to Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease III, bacterial [Medicago truncatula] (GB:ABD32724.1); contains InterPro domain Argonaute and Dicer protein, PAZ (InterPro:IPR
Range:  from: 23146    to: 31227    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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