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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                  <-----------GT1
                                                       --------->ATHB12 <---------ANAC58
                                                      --------->AHL20(2)<---------ANAC55(2)
                                                      <---------AHL20(2)<---------O2
                                                <---------ANAC58        <---------bZIP60(2)
                                                <---------ANAC58        <---------TGA1a
                                            <-------GAMYB               --------->TGA1a
      <---------ARR11(3)                    ======================================MYC_MYB
 <---------ATHB12                       ------------>AtMYB77            <---------ANAC46
----ANAC58                              ==========================================MYC_MYB         <-
----ANAC58                     --------->TOE2(3)<---------ANAC46        <---------ANAC58       -----
->ICU4--------->ARR11(3)    <-----------GT1 <---------At4g35610       <------ZmHOX2a(1) <---------AtMYB61
 
tgaaatcaagaacttgaattgaaatagttttttacctgaatattgacagttgctggattaattgcattgtagaggacgtgtctatatacctttggtctgt  8300
                                                                                              ------
                                                                                     --------->DAG2
                                                                                    ---------->DOF2
                                                                                 --------------->AGL15
                                                                                 <---------------AGL15
                                                                                 ===================
                                                     <---------------AGL15      ----------------->AGL3
                                                     --------------->AGL15      --------------->AGL15
                                                     =============================================MADS_MADS
                                                     ============================================MADS_MADS
                                                    ============================================MADS_MADS
                                                    <-----------------AGL3      ----------------->AG
                                                    ============================================MADS_MADS
                                                    =============================================MADS_MADS
                                                    <-----------------AGL1      ----------------->AGL2
                                                    ----------------->AGL2     =====================
                                                    <-----------------AGL2     --------->ANAC58
                                                    ----------------->AGL3     <-----------------AG
                                                    ==============================================MADS_MADS
    <---------AHL20(2)                              <-----------------AG       <-----------------AGL1
   --------->AHL20(2)                               ----------------->AGL1     --------->ANAC46    -
<------ZmHOX2a(1)                     --------->AHL20(2)        --------->ANAC58----------------->AGL1
----------->GT1     --------->At4g35610---------->DOF2          --------->ANAC58<---------------AGL15
--------TOE1(3)    --------->GLK1(2)  <---------AHL20(2)      ---------->DOF2  --------->ANAC58 ----
------>HVH21--------->YAB1---------->DOF2           ----------------->AG----------->GT1   ----------
 
gaaggattaaatcgatgaaaataatctgccaaagaaaacaattaaagaaccaaaaaccaaaattggaaagaaatagggaaacacccaaaaagggaaagaa  8400
                                                  --------->AtLEC2            <---------YAB1
                                                <---------ANAC58           <---------YAB1
---->DOF2                            ----------->RAV1(2)            <-----------GT1
===========================================================================MADS_MADS
===========================================================================MADS_MADS        <-------
---------->GT1        --------->ZAT6 <---------At4g35610   =========================================
------->GT1     <---------ANAC58     --------->At4g35610   --------------->AGL15      ----------->GT1
>DOF2           <---------ANAC58------->TEIL    <---------ANAC58 --------->YAB1 ---------->DOF2
 
agtgattaaaacagaccatgcgttcacactcgatgtactcatctgctacttccttgcaatttccctaaatataacaatatgatcaaagatggaaactttg  8500
                                             <-------TEIL
                                           <---------ARR11(3)
                                           --------->ARR14(2)
             --------->ARR14(2)     ---------->DOF2
             --------->GLK1(2)     <---------WRKY12
             <---------ARR11(3)    <---------WRKY45
             <---------ARR14(2)    <---------WRKY38(1)
            <---------GLK1(2)    <-----------HVH21         <---------ARR11(3)
    <---------AHL20(2)  ----------------->AGL1             --------->GLK1(2)
   <---------AHL20(2)   --------->TOE2(3)  <---------ARR14(2)    --------->ANAC58
   --------->AHL20(2)   --------->TOE1(3)  --------->ARR11(3)    --------->ANAC58          ---------
   --------->AHL20(1)   ----------------->AG<------ZmHOX2a(2)    <---------ANAC55(2)      --------->ANAC46
---DOF2     <---------ARR14(1) --------->MYB59   <---------ICU4  --------->ANAC55(2)     <---------LBD16
==========================================MADS_MADS        --------->ARR11(3)     ------->TEIL
 
aagaaatttaatagagaatcttataaaccctaattgggtcaaagaagatccattaatacaaaaatcttacgcatttcatgagacgaatgttacccggaga  8600
                                                          <------NtERF2
                                                         ------>NtERF2
                                                        --------->RAP2.3(2)
                                                        --------->DREB2C(2)
                                                        --------->RRTF1(2)
                                                        --------->RRTF1(3)
                                                        --------->ANAC46
                                                        --------->DEAR3(1)
                                                        --------->RAP2.3(3)
                                                        --------->ATERF1(2)
                                                        --------->RAP2.6(2)
                                                        <---------ATERF1(2)
                                                <---------ZAT18
                                                --------->ZAT18
                                                --------->ZAT14
                                                <---------ZAT14
                                         --------->At4g35610
                        ---------->DOF2  <---------At4g35610
                    --------->TOE1(3)   ------->TEIL   --------->RAP2.3(1)
                    --------->TOE2(3)--------->ANAC46  --------->ERF1
               <---------DAG2        --------->ANAC58 <---------ATERF1(1)
>LBD16         <----------DOF2       --------->ANAC58--------->ANAC46
 
gtattgaatgaacaatgactttaccctaaaaccacatcccacgcatctgtgttcactcgccgccattgctctctctctctctctctctctctctctctca  8700
                              --------->ALFIN1
                   --------->YAB1
          --------->ANAC46   <---------ARR14(2)
          <---------ANAC55(2)<-----------HVH21   --------------->AGL15
         <---------LBD16     --------->ARR14(2)  --------->TOE2(3)                            ------
       --------->ARR14(2)  --------->LBD16       --------->TOE1(3)                          --------
       <---------ARR14(2)<---------LBD16        --------->ZAT6                              --------
   >>>>>>>>>TBF1--------->WOX13(1)  *TSS      <-----------GT1    --------->ATHB12           <-------
 
agagaagaagaatacggagcaattagagtccgggtctgggctactgttttaaccctaaatgggcttattcatgggccaagtttttgaagtcttaacttta  8800
      --------->PCF2                                            <-------MYC3
    --------->MYB59                  ------->TEIL               ------->MYC3                      --
  <---------MYB52(1)             --------------->AtSPL8        --------->ANAC46                   --
  <<<<<<<<<MYB98                <-----------TBP           --------->ARR14(2)                      <-
--->AHL20(2)            <---------LBD16                --------->YAB1      <---------YAB1         --
->TOE1(3)   <---------DAG2--------->LBD16       --------->AHL20(2)      <---------AHL20(2)        <-
->TOE2(3)   <----------DOF2<------NtERF2        <---------AHL20(2)      --------->AHL20(2)        <-
---DOF2  <---------ALFIN1<---------LBD16       --------->AHL20(2) ----------->GT1            <------ZmHOX2a(2)
 
aatttgttaggcccacttttgctctaagccggggtatttgtaccccaaaatttaaaaatcatatacacgttgtaatttataaatagttcaatttggatca  8900
                                     <-------TEIL
                                  <---------DEAR3(2)
                                  <------MYB83
                                  <------MYB46(1)
          ----------->HVH21      <---------TOE2(2)                       --------->CCA1(2)
------->GLK1(2)                  <---------TOE1(2)                      <---------ARR11(3)
------->ARR11(3)              <---------ANAC58                   --------->At4g35610         <------
--------ARR14(3)              <---------ANAC58                 <-----------RAV1(2)           -------
------->ARR14(3)              <---------ANAC46       <---------YAB1     --------->ARR11(3)  <-------
--------ARR11(3)        <---------AHL20(2)        --------->AHL20(1)---------->DOF2         <-------
----------ARR10       --------->AHL20(2)<---------YAB1        <------NtERF2 <-------TEIL    --------
 
aaatcttgtccatatgacatagcattttaaaatgcgtaggttcatgaatgaaacatattataggcctcagataaagatatacatattaagtctaaattat  9000
                                                                      <---------------AGL15
                                                                      --------------->AGL15
                                                            <---------ZAT6
                                                            ----------->GT1
                                                     <---------At5g28300
                                                    <-----------GT1  <-----------------AGL3
                                                   <---------YAB1    <-----------------AGL2
                                                <---------YAB1 <-----------GT1
                                                <---------AHL20(2)   ----------------->AGL3
---AHL20(2)                                    <---------AHL20(1) <----------DOF2                <--
-->AHL20(2)                            <---------ZAT18    <---------ANAC58                   <------
--AHL20(2)      <---------ALFIN1       --------->ZAT18    <---------ANAC58            <---------ANAC58
--AHL20(1)  <---------At5g28300     <---------MYB46(3) <-----------RAV1(1)            <---------ANAC46
->AHL20(2) <-----------GT1---------->DOF2   --------->YAB1<---------ANAC46            <---------ANAC58
 
ttagtcttcagaatttaccacacttactgaaaagtctagtggttcactaatattattactgtcgtgttactttctatatatagttcatgacttgtgagtt  9100
                                <-----------GT1
                                --------->YAB1
                             <---------ICU4
                             <---------AHL20(2)
                            <---------AHL20(2)
                            --------->AHL20(2)
                         <---------AHL20(2)
                         --------->AHL20(2)                          <---------AHL20(2)
                        <---------AHL20(2)                          <---------AHL20(2)
                        --------->AHL20(2)                 <---------AHL20(2)
                        <---------AHL20(1)             --------->AHL20(2)               <---------ARR11(3)
                     --------->AHL20(1)                <---------AHL20(2)               --------->ARR11(3)
                     <---------AHL20(1)               <---------AHL20(1)             <---------AHL20(2)
                     --------->AHL20(2)               --------->AHL20(2)             --------->AHL20(2)
<---------WOX13(1)   <---------AHL20(2)               <---------AHL20(2)       ----------->GT1
<---------ANAC46    <---------AHL20(2)        --------->ZAT14       --------->AHL20(2)<---------AHL20(2)
-------YAB1         --------->AHL20(2)        <---------ZAT14   <---------YAB1--------->DAG2
-GAMYB          --------->AHL20(2)<---------YAB1      --------->AHL20(1)    ---------->DOF2    <----
 
gtgatggataagtttataagaaaataaattatttattacaattcaacagtgaagaaatttatttagtttgattaaataagaaaggtaaataaatcttcgt  9200
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AGI:  At1g01020.1   
Description:  ARV1. similar to ARV2 [Arabidopsis thaliana] (TAIR:AT4G01510.1); similar to Os03g0784300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051472.1); similar to hypothetical protein [Oryza sativa] (GB:AAK72888.1); similar to hypothetical protein OsI_013313 [Oryza sativa (indica cultivar-group)] (GB:EAY92080.1); contains InterPro domain Arv1-like protein (InterPro:IPR007290)
Range:  from: 6790    to: 8737    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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